# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_165 - 744 Mg_chelatase PF01078.16 207 0.0022 11.7 0.0 1 1 1.6e-05 0.0053 10.5 0.0 25 70 480 526 472 552 0.70 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_71 - 478 Methyltransf_32 PF13679.1 141 1.2e-05 19.7 0.0 1 1 6.5e-08 2.2e-05 18.8 0.0 13 84 60 133 54 167 0.78 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_71 - 478 Methyltransf_12 PF08242.7 99 7.3e-05 17.8 0.0 1 1 6.7e-07 0.00023 16.3 0.0 2 64 78 146 77 167 0.91 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_165 - 744 cobW PF02492.14 178 5.9e-05 17.2 0.1 1 1 4.1e-07 0.00014 16.0 0.1 3 23 480 500 478 514 0.84 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_68 - 475 Seryl_tRNA_N PF02403.17 108 0.032 8.9 27.0 1 2 0.00055 0.18 6.4 6.0 13 104 75 170 65 173 0.75 # 79369 # 80793 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_68 - 475 Seryl_tRNA_N PF02403.17 108 0.032 8.9 27.0 2 2 0.0003 0.1 7.3 13.2 32 92 188 252 170 260 0.78 # 79369 # 80793 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_165 - 744 ABC_ATPase PF09818.4 448 4.1e-05 16.9 0.8 1 2 0.07 23 -2.1 0.1 33 187 175 331 138 345 0.54 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 ABC_ATPase PF09818.4 448 4.1e-05 16.9 0.8 2 2 2.4e-07 7.9e-05 15.9 0.0 221 265 452 498 448 503 0.84 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_9 - 431 MipZ PF09140.6 261 0.00031 14.5 0.2 1 2 9e-06 0.003 11.2 0.0 2 92 119 210 118 220 0.72 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_9 - 431 MipZ PF09140.6 261 0.00031 14.5 0.2 2 2 0.013 4.3 0.9 0.1 85 136 272 324 239 328 0.64 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_71 - 478 Methyltransf_18 PF12847.2 112 0.00038 15.7 0.0 1 2 9.5e-06 0.0032 12.7 0.0 3 37 74 114 72 187 0.86 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_71 - 478 Methyltransf_18 PF12847.2 112 0.00038 15.7 0.0 2 2 0.074 25 0.2 0.0 46 80 264 298 202 323 0.74 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_19 - 857 UvrD_C_2 PF13538.1 104 8.5e-07 23.7 0.0 1 1 1.6e-08 5.2e-06 21.2 0.0 49 103 661 737 615 738 0.79 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_208 - 598 DUF87 PF01935.12 229 0.0001 16.8 0.0 1 1 2.3e-06 0.00019 15.9 0.0 20 45 127 152 114 168 0.83 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 DUF87 PF01935.12 229 0.0001 16.8 0.0 1 1 2.3e-06 0.00019 15.9 0.0 20 45 127 152 114 168 0.83 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_175 - 471 DUF87 PF01935.12 229 0.0012 13.3 0.2 1 1 5.4e-05 0.0045 11.4 0.1 27 48 247 268 245 278 0.85 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_53 - 491 DUF87 PF01935.12 229 0.07 7.5 14.2 1 1 6.1e-05 0.0051 11.2 8.4 86 193 285 391 259 416 0.68 # 60333 # 61805 # 1 # ID=1_53;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 1_165 - 744 AAA_22 PF13401.1 131 4.4e-06 21.5 0.0 1 1 1.1e-07 1.2e-05 20.1 0.0 4 29 477 502 472 586 0.64 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_22 PF13401.1 131 1e-05 20.3 0.2 1 1 5.7e-07 6.4e-05 17.7 0.1 4 37 243 283 237 441 0.88 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_328 - 370 AAA_22 PF13401.1 131 0.00017 16.3 0.0 1 1 2.9e-06 0.00032 15.5 0.0 37 125 70 183 30 191 0.66 # 286948 # 288057 # -1 # ID=1_328;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_252 - 420 DNA_methylase PF00145.12 335 7.1e-24 79.1 0.0 1 2 9e-05 0.01 9.5 0.0 2 51 8 59 7 68 0.85 # 236245 # 237504 # 1 # ID=1_252;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_252 - 420 DNA_methylase PF00145.12 335 7.1e-24 79.1 0.0 2 2 4.7e-22 5.2e-20 66.4 0.0 48 210 86 257 74 404 0.66 # 236245 # 237504 # 1 # ID=1_252;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.409 1_82 - 468 DNA_methylase PF00145.12 335 5.9e-22 72.8 0.0 1 1 7.5e-23 8.3e-21 69.0 0.0 4 333 135 449 132 451 0.77 # 90463 # 91866 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.417 1_131 - 479 DNA_methylase PF00145.12 335 1.9e-13 44.8 0.0 1 2 2e-13 2.3e-11 38.0 0.0 46 179 207 348 195 375 0.76 # 129908 # 131344 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_131 - 479 DNA_methylase PF00145.12 335 1.9e-13 44.8 0.0 2 2 0.0027 0.3 4.7 0.0 295 331 420 457 350 461 0.76 # 129908 # 131344 # 1 # ID=1_131;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.384 1_165 - 744 AAA_17 PF13207.1 121 1e-05 21.0 0.1 1 1 4.6e-07 7.7e-05 18.1 0.0 2 64 480 545 479 592 0.69 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_17 PF13207.1 121 8.6e-05 18.0 0.5 1 1 1.5e-06 0.00025 16.5 0.1 2 23 246 267 245 336 0.79 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 AAA_21 PF13304.1 303 0.0014 13.3 3.9 1 2 0.071 24 -0.7 3.3 75 195 122 245 80 358 0.74 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 AAA_21 PF13304.1 303 0.0014 13.3 3.9 2 2 1.2e-05 0.0041 11.7 0.0 2 20 480 498 479 525 0.82 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 Miro PF08477.8 119 0.00092 14.3 0.1 1 1 2.6e-05 0.0043 12.2 0.0 2 26 480 509 479 551 0.69 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 Miro PF08477.8 119 0.002 13.2 0.0 1 1 2.4e-05 0.004 12.3 0.0 2 38 246 282 245 346 0.71 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 MobB PF03205.9 140 0.00024 15.4 0.1 1 1 3.9e-06 0.00065 14.0 0.1 3 24 480 501 478 510 0.90 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 MobB PF03205.9 140 0.00048 14.5 0.0 1 1 7.7e-06 0.0013 13.1 0.0 3 25 246 268 244 276 0.88 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_9 - 431 ArsA_ATPase PF02374.10 305 2.2e-07 24.8 0.2 1 2 6.7e-09 2.2e-06 21.5 0.0 7 60 124 180 118 218 0.78 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_9 - 431 ArsA_ATPase PF02374.10 305 2.2e-07 24.8 0.2 2 2 0.016 5.4 0.5 0.0 124 137 284 297 238 314 0.75 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_175 - 471 PhoH PF02562.11 205 0.00025 14.9 0.0 1 1 1.3e-06 0.00043 14.1 0.0 4 55 223 279 220 289 0.82 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 T2SE PF00437.15 272 1.3e-41 136.8 2.7 1 1 8.6e-44 1.4e-41 136.7 1.2 91 267 442 612 416 616 0.85 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 T2SE PF00437.15 272 5.4e-27 88.9 0.1 1 1 6.5e-29 1.1e-26 87.9 0.1 115 262 230 386 195 396 0.78 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 Zeta_toxin PF06414.7 201 0.00024 14.8 0.2 1 1 2e-06 0.00068 13.4 0.0 18 41 479 502 474 536 0.87 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 SMC_N PF02463.14 220 0.0029 11.4 1.9 1 1 1.4e-05 0.0046 10.8 0.0 20 45 473 498 464 510 0.88 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_160 - 152 dsrm PF00035.20 67 0.0027 12.9 0.2 1 1 1.6e-05 0.0052 12.0 0.2 1 25 106 130 106 135 0.90 # 151223 # 151678 # -1 # ID=1_160;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.353 1_328 - 370 Arch_ATPase PF01637.13 234 3.1e-09 31.4 0.1 1 1 5.5e-11 6.2e-09 30.5 0.1 27 200 34 218 28 240 0.72 # 286948 # 288057 # -1 # ID=1_328;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_165 - 744 Arch_ATPase PF01637.13 234 7.4e-05 17.1 1.8 1 1 2.4e-06 0.00027 15.3 0.0 19 45 476 502 466 637 0.60 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_39 - 583 Arch_ATPase PF01637.13 234 0.0026 12.1 0.0 1 1 5.7e-05 0.0064 10.8 0.0 23 131 85 190 78 205 0.69 # 42727 # 44475 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_165 - 744 AAA_16 PF13191.1 185 8.8e-07 23.7 0.0 1 1 2.3e-08 2.6e-06 22.2 0.0 15 81 468 544 465 597 0.74 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_16 PF13191.1 185 4e-06 21.5 0.0 1 1 8.1e-08 9e-06 20.4 0.0 22 53 241 273 229 292 0.86 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_39 - 583 AAA_16 PF13191.1 185 1.7e-05 19.4 0.0 1 2 0.00025 0.028 9.0 0.0 27 60 85 121 63 146 0.78 # 42727 # 44475 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_39 - 583 AAA_16 PF13191.1 185 1.7e-05 19.4 0.0 2 2 0.00061 0.068 7.7 0.0 66 119 354 440 338 479 0.71 # 42727 # 44475 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_165 - 744 AAA_23 PF13476.1 202 2e-06 22.9 0.0 1 1 1.2e-08 2e-06 22.9 0.0 18 39 476 497 465 500 0.92 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_23 PF13476.1 202 8.6e-06 20.8 0.3 1 1 1.7e-07 2.8e-05 19.1 0.0 18 39 242 263 226 265 0.83 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 AAA_18 PF13238.1 129 2.3e-05 19.4 1.7 1 1 4.6e-07 7.8e-05 17.6 0.0 1 23 480 517 480 554 0.64 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_18 PF13238.1 129 7e-05 17.8 0.1 1 1 2.2e-06 0.00037 15.4 0.0 1 32 246 274 246 300 0.72 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_68 - 475 AAA_13 PF13166.1 712 0.025 7.6 29.1 1 1 8.7e-05 0.029 7.3 28.2 289 469 69 251 59 260 0.74 # 79369 # 80793 # 1 # ID=1_68;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.396 1_9 - 431 CbiA PF01656.18 195 3.8e-16 53.6 0.0 1 1 1.9e-18 6.3e-16 52.9 0.0 1 191 120 386 120 390 0.70 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_175 - 471 KaiC PF06745.8 227 0.0015 12.3 0.0 1 1 8.9e-06 0.003 11.3 0.0 10 64 234 288 230 294 0.82 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 AAA_14 PF13173.1 128 1.4e-05 19.7 0.1 1 1 2.5e-07 8.5e-05 17.1 0.0 3 85 478 568 476 593 0.57 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 AAA_29 PF13555.1 62 1.4e-06 22.4 0.0 1 1 2.3e-08 3.9e-06 21.0 0.0 21 50 476 504 468 509 0.82 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_29 PF13555.1 62 1.3e-05 19.3 0.0 1 1 1.6e-07 2.8e-05 18.2 0.0 24 45 244 265 231 270 0.85 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 AAA PF00004.24 132 2.4e-05 19.2 0.0 1 1 4.1e-07 6.8e-05 17.7 0.0 1 116 480 617 480 629 0.56 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA PF00004.24 132 0.0011 13.8 0.0 1 1 1.9e-05 0.0031 12.3 0.0 1 26 246 271 246 331 0.73 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_19 - 857 UvrD_C PF13361.1 351 2.5e-50 166.4 1.6 1 1 4.1e-52 1.4e-49 164.0 1.6 2 350 338 741 337 742 0.83 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_3 - 209 RNA_pol_Rpb1_5 PF04998.12 277 0.0049 10.7 5.7 1 1 2e-05 0.0065 10.3 5.7 101 228 22 155 18 195 0.83 # 2999 # 3625 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_8 - 1143 PAPS_reduct PF01507.14 174 9.4e-08 26.7 0.0 1 1 8.7e-10 2.9e-07 25.0 0.0 6 149 58 248 54 259 0.79 # 7980 # 11408 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_175 - 471 MMR_HSR1 PF01926.18 116 0.0025 12.4 0.0 1 1 1.4e-05 0.0048 11.5 0.0 2 22 246 266 245 378 0.81 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_71 - 478 N6_Mtase PF02384.11 311 2.7e-10 34.4 0.0 1 1 2.3e-12 3.9e-10 33.9 0.0 20 239 42 270 33 299 0.83 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_132 - 211 N6_Mtase PF02384.11 311 0.00038 14.2 0.0 1 1 3.3e-06 0.00054 13.7 0.0 14 68 77 132 75 146 0.76 # 131641 # 132273 # 1 # ID=1_132;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.403 1_208 - 598 TraG-D_C PF12696.2 128 3.9e-08 27.8 0.0 1 1 4.2e-10 7.1e-08 27.0 0.0 4 127 438 558 435 559 0.78 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 TraG-D_C PF12696.2 128 3.9e-08 27.8 0.0 1 1 4.2e-10 7.1e-08 27.0 0.0 4 127 438 558 435 559 0.78 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_9 - 431 AAA_31 PF13614.1 157 0.00076 14.0 0.1 1 2 6.9e-05 0.023 9.2 0.0 1 50 118 170 118 207 0.83 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_9 - 431 AAA_31 PF13614.1 157 0.00076 14.0 0.1 2 2 0.011 3.6 2.1 0.1 111 150 280 318 269 325 0.79 # 11565 # 12857 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_165 - 744 NTPase_1 PF03266.10 168 6.8e-05 17.2 2.4 1 2 1e-06 0.00034 14.9 0.1 2 22 480 500 479 506 0.91 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 NTPase_1 PF03266.10 168 6.8e-05 17.2 2.4 2 2 0.023 7.5 0.8 0.0 93 136 542 581 521 594 0.55 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 AAA_33 PF13671.1 143 0.00016 16.2 0.0 1 1 1.5e-06 0.00049 14.6 0.0 1 41 479 523 479 551 0.67 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_71 - 478 Methyltransf_26 PF13659.1 117 1.7e-08 29.1 0.0 1 1 1.2e-10 4.1e-08 27.9 0.0 3 116 75 216 74 217 0.70 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_19 - 857 AAA_30 PF13604.1 196 0.00018 15.7 0.0 1 1 5.1e-06 0.00057 14.1 0.0 2 67 20 84 19 130 0.65 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_165 - 744 AAA_30 PF13604.1 196 0.00046 14.4 0.1 1 1 1.8e-05 0.002 12.3 0.0 9 38 468 497 466 510 0.88 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_30 PF13604.1 196 0.0019 12.4 0.0 1 1 4.3e-05 0.0047 11.1 0.0 14 45 239 270 225 280 0.83 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 FtsK_SpoIIIE PF01580.13 205 0.00023 15.3 0.0 1 1 1.4e-06 0.00046 14.3 0.0 39 63 476 502 447 507 0.84 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_71 - 478 MTS PF05175.9 170 5.7e-07 23.7 0.0 1 1 6.8e-08 2.3e-05 18.4 0.0 22 142 59 217 55 240 0.64 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_30 - 364 tRNA-synt_2c PF01411.14 552 0.00087 12.2 0.0 1 1 3.4e-06 0.0011 11.8 0.0 474 514 183 223 130 260 0.77 # 34397 # 35488 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.399 1_184 - 2222 Helicase_C_4 PF13871.1 278 1.7e-18 61.6 1.2 1 1 9.7e-21 3.2e-18 60.7 0.0 1 271 1148 1400 1148 1407 0.86 # 174517 # 181182 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.400 1_328 - 370 AAA_35 PF14516.1 331 0.00015 15.1 0.2 1 1 1.4e-06 0.00047 13.4 0.1 34 157 30 167 23 175 0.68 # 286948 # 288057 # -1 # ID=1_328;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.406 1_165 - 744 Dynamin_N PF00350.18 168 0.0012 13.3 2.5 1 1 5.3e-06 0.0018 12.7 0.0 1 57 480 535 480 575 0.81 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 ABC_tran PF00005.22 137 4.3e-05 18.4 0.0 1 1 6e-07 0.0001 17.3 0.0 11 37 243 269 236 310 0.86 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 ABC_tran PF00005.22 137 4.3e-05 18.4 0.0 1 1 2.6e-07 4.3e-05 18.4 0.0 13 68 479 546 473 637 0.66 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_71 - 478 Eco57I PF07669.6 106 4.8e-13 44.0 0.0 1 1 3.2e-15 1.1e-12 42.9 0.0 4 105 162 267 159 268 0.91 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_19 - 857 AAA_19 PF13245.1 76 5.6e-10 33.5 0.6 1 1 3.1e-11 3.4e-09 31.0 0.2 11 74 33 101 25 102 0.79 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_165 - 744 AAA_19 PF13245.1 76 2.3e-06 21.9 0.0 1 1 4.6e-08 5.1e-06 20.8 0.0 4 33 470 499 467 517 0.85 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_19 PF13245.1 76 0.00028 15.2 0.0 1 1 5.5e-06 0.00061 14.2 0.0 9 39 242 269 235 281 0.77 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_59 - 1068 AAA_10 PF12846.2 304 2.1e-25 84.3 0.5 1 1 3.5e-27 3.9e-25 83.5 0.2 5 303 495 914 491 915 0.81 # 65113 # 68316 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.402 1_165 - 744 AAA_10 PF12846.2 304 0.00072 13.6 0.1 1 1 1.7e-05 0.0019 12.2 0.1 3 26 479 502 477 505 0.89 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_10 PF12846.2 304 0.0014 12.7 0.0 1 1 4.3e-05 0.0048 10.9 0.0 2 24 244 266 243 270 0.87 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_184 - 2222 AAA_34 PF13872.1 303 2.1e-08 27.9 0.1 1 2 4.6e-09 1.5e-06 21.7 0.0 61 117 627 682 587 709 0.78 # 174517 # 181182 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.400 1_184 - 2222 AAA_34 PF13872.1 303 2.1e-08 27.9 0.1 2 2 0.0016 0.55 3.5 0.0 156 231 805 877 766 907 0.76 # 174517 # 181182 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.400 1_19 - 857 ThiF PF00899.16 136 0.0021 12.5 0.6 1 3 0.066 22 -0.5 0.1 82 104 516 538 470 564 0.65 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_19 - 857 ThiF PF00899.16 136 0.0021 12.5 0.6 2 3 0.025 8.2 0.9 0.0 59 99 538 581 537 594 0.75 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_19 - 857 ThiF PF00899.16 136 0.0021 12.5 0.6 3 3 0.00014 0.046 8.2 0.1 83 133 634 684 613 687 0.77 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_184 - 2222 ResIII PF04851.10 184 1.6e-06 22.7 0.3 1 1 6.3e-08 7.1e-06 20.6 0.0 20 181 614 865 601 868 0.78 # 174517 # 181182 # 1 # ID=1_184;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.400 1_208 - 598 ResIII PF04851.10 184 3.2e-06 21.7 0.1 1 2 8.8e-06 0.00098 13.6 0.0 19 47 124 151 112 187 0.77 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_208 - 598 ResIII PF04851.10 184 3.2e-06 21.7 0.1 2 2 0.0023 0.26 5.7 0.0 73 164 481 583 471 593 0.71 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 ResIII PF04851.10 184 3.2e-06 21.7 0.1 1 2 8.8e-06 0.00098 13.6 0.0 19 47 124 151 112 187 0.77 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 ResIII PF04851.10 184 3.2e-06 21.7 0.1 2 2 0.0023 0.26 5.7 0.0 73 164 481 583 471 593 0.71 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_71 - 478 Methyltransf_31 PF13847.1 152 0.00025 15.3 0.0 1 1 1.7e-06 0.00056 14.1 0.0 5 45 74 119 70 164 0.86 # 81894 # 83327 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.418 1_175 - 471 DUF2075 PF09848.4 352 0.0017 11.9 0.0 1 1 9.2e-06 0.0031 11.1 0.0 3 73 245 314 243 333 0.76 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_269 - 297 Methyltransf_27 PF13708.1 194 4.6e-29 95.9 0.0 1 1 6.3e-31 2.1e-28 93.8 0.0 2 189 96 288 95 291 0.82 # 247710 # 248600 # 1 # ID=1_269;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.415 1_208 - 598 TrwB_AAD_bind PF10412.4 386 4.5e-05 16.8 0.3 1 2 0.001 0.17 5.0 0.0 13 34 128 149 123 170 0.87 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_208 - 598 TrwB_AAD_bind PF10412.4 386 4.5e-05 16.8 0.3 2 2 3.6e-05 0.006 9.8 0.1 245 377 436 569 403 574 0.80 # 199935 # 201728 # -1 # ID=1_208;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 TrwB_AAD_bind PF10412.4 386 4.5e-05 16.8 0.3 1 2 0.001 0.17 5.0 0.0 13 34 128 149 123 170 0.87 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_234 - 598 TrwB_AAD_bind PF10412.4 386 4.5e-05 16.8 0.3 2 2 3.6e-05 0.006 9.8 0.1 245 377 436 569 403 574 0.80 # 221353 # 223146 # -1 # ID=1_234;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.410 1_39 - 583 AAA_11 PF13086.1 236 0.002 12.3 0.0 1 1 1.2e-05 0.0039 11.4 0.0 22 67 87 125 74 263 0.90 # 42727 # 44475 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.411 1_287 - 277 TIGR00755 TIGR00755 256 4e-05 17.3 0.0 1 1 1.7e-07 5.7e-05 16.8 0.0 30 82 92 145 67 165 0.79 # 258612 # 259442 # 1 # ID=1_287;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 1_115 - 319 MethyltransfD12 PF02086.10 260 0.00067 13.7 1.2 1 2 5.8e-06 0.0019 12.2 0.2 51 115 40 105 24 168 0.79 # 116276 # 117232 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_115 - 319 MethyltransfD12 PF02086.10 260 0.00067 13.7 1.2 2 2 0.028 9.3 0.2 0.1 128 158 211 243 187 292 0.73 # 116276 # 117232 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_175 - 471 RNA_helicase PF00910.17 107 0.00019 16.2 0.0 1 1 1.8e-06 0.00061 14.6 0.0 1 28 246 273 246 289 0.84 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 UPF0079 PF02367.12 123 0.002 12.4 0.0 1 1 2e-05 0.0066 10.7 0.0 11 39 474 501 467 523 0.79 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_19 - 857 UvrD-helicase PF00580.16 315 2.6e-54 179.2 0.5 1 1 1.6e-56 2.6e-54 179.2 0.5 1 311 20 328 20 331 0.84 # 24878 # 27448 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.408 1_17 - 413 UvrD-helicase PF00580.16 315 0.00027 14.9 1.8 1 1 2.6e-06 0.00043 14.2 1.8 128 254 159 287 99 312 0.79 # 22741 # 23979 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.400 1_175 - 471 NACHT PF05729.7 166 4.3e-05 17.8 0.0 1 1 5.7e-07 9.5e-05 16.7 0.0 2 28 245 271 244 281 0.88 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 NACHT PF05729.7 166 0.00015 16.1 0.1 1 1 1.7e-06 0.00028 15.2 0.1 3 23 480 500 478 507 0.90 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_175 - 471 AAA_25 PF13481.1 194 1.5e-07 25.6 0.0 1 1 2.3e-09 3.9e-07 24.3 0.0 19 59 229 269 213 378 0.84 # 165200 # 166612 # -1 # ID=1_175;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_165 - 744 AAA_25 PF13481.1 194 0.00013 16.0 0.0 1 1 1.7e-06 0.00029 14.9 0.0 13 61 457 505 449 521 0.78 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_165 - 744 AAA_28 PF13521.1 163 0.0023 12.5 0.0 1 1 2e-05 0.0066 11.0 0.0 2 20 480 498 479 540 0.86 # 154449 # 156680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.386 1_39 - 583 AAA_5 PF07728.9 139 1.8e-06 22.3 0.0 1 1 3.4e-08 1.1e-05 19.7 0.0 4 103 87 215 84 242 0.76 # 42727 # 44475 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.411 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8fdc4639-2b20-4348-94b9-4f4db45468b9 # Target file: checkm_output/bins/pGCA_002149105.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002149105.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8fdc4639-2b20-4348-94b9-4f4db45468b9 checkm_output/bins/pGCA_002149105.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:52 2020 # [ok]