# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_4 - 532 UPF0020 PF01170.13 180 1.7e-05 17.1 0.0 1 1 4.1e-07 3.5e-05 16.1 0.0 31 120 219 306 202 314 0.78 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 1_12 - 146 Usp PF00582.21 140 7.6e-25 80.4 0.0 1 1 1e-26 8.7e-25 80.2 0.0 2 140 7 145 6 145 0.97 # 9414 # 9851 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.361 2_3 - 1026 AAA_22 PF13401.1 131 0.00084 12.2 6.1 1 2 6.1e-06 0.00052 12.9 0.7 68 125 362 447 280 452 0.55 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 2_3 - 1026 AAA_22 PF13401.1 131 0.00084 12.2 6.1 2 2 0.094 8.1 -0.7 0.0 53 94 632 681 598 708 0.76 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_15 - 198 AAA_21 PF13304.1 303 0.066 5.8 18.2 1 1 0.00098 0.084 5.4 18.2 63 219 21 179 6 196 0.75 # 12181 # 12774 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.271 12_2 - 211 AAA_13 PF13166.1 712 0.021 5.9 28.3 1 1 0.00036 0.031 5.3 28.2 284 438 32 194 17 203 0.76 # 1241 # 1873 # 1 # ID=12_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;gc_cont=0.306 2_4 - 532 Methyltransf_25 PF13649.1 101 0.00082 12.5 0.0 1 2 0.00027 0.023 7.8 0.0 2 74 221 306 220 341 0.76 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 2_4 - 532 Methyltransf_25 PF13649.1 101 0.00082 12.5 0.0 2 2 0.041 3.6 0.8 0.0 42 76 436 486 389 528 0.50 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 4_3 - 67 CSD PF00313.17 66 2.3e-22 71.3 0.2 1 1 2.9e-24 2.5e-22 71.2 0.2 2 65 3 65 2 66 0.97 # 2574 # 2774 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.313 2_4 - 532 N6_Mtase PF02384.11 311 3.1e-121 396.9 0.0 1 1 5.1e-123 4.4e-121 396.3 0.0 2 310 168 476 167 477 0.98 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 2_4 - 532 Methyltransf_26 PF13659.1 117 6.9e-14 44.6 0.0 1 1 1.9e-15 1.6e-13 43.4 0.0 2 116 218 353 217 354 0.78 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 4_3 - 67 OB_RNB PF08206.6 58 0.00059 12.1 1.2 1 1 1.1e-05 0.00095 11.4 1.2 7 42 12 51 7 65 0.68 # 2574 # 2774 # -1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.313 2_4 - 532 MTS PF05175.9 170 0.00013 14.1 0.0 1 1 2.9e-06 0.00025 13.1 0.0 52 140 239 352 211 363 0.71 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 2_4 - 532 Eco57I PF07669.6 106 4.7e-07 22.9 0.1 1 1 3.5e-08 3e-06 20.3 0.0 2 104 292 403 291 405 0.87 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 2_3 - 1026 ResIII PF04851.10 184 9.5e-45 145.3 2.9 1 2 1.1e-46 9.5e-45 145.3 2.9 2 183 262 448 261 449 0.95 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 2_3 - 1026 ResIII PF04851.10 184 9.5e-45 145.3 2.9 2 2 0.077 6.6 -0.8 5.7 68 156 750 851 734 875 0.75 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 2_4 - 532 Methyltransf_31 PF13847.1 152 0.00046 12.5 0.0 1 1 2.2e-05 0.0019 10.5 0.0 6 83 219 302 214 330 0.86 # 4922 # 6517 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.398 3_9 - 994 DUF3584 PF12128.3 1201 0.079 2.8 62.7 1 2 9.3e-08 8e-06 16.1 24.0 298 531 245 485 231 487 0.72 # 5393 # 8374 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 994 DUF3584 PF12128.3 1201 0.079 2.8 62.7 2 2 0.0001 0.0086 6.0 12.7 300 402 445 551 431 557 0.65 # 5393 # 8374 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.381 2_3 - 1026 DEAD PF00270.24 169 4e-12 38.6 0.6 1 1 4.7e-14 4e-12 38.6 0.6 3 162 267 447 265 454 0.70 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 1_5 - 208 AAA_11 PF13086.1 236 0.00019 13.7 1.5 1 1 2.8e-06 0.00024 13.4 1.5 88 176 28 117 6 127 0.70 # 3456 # 4079 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 2_3 - 1026 SNF2_N PF00176.18 299 4.4e-10 31.4 0.4 1 1 5.1e-12 4.4e-10 31.4 0.4 2 174 268 449 204 458 0.78 # 1845 # 4922 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.380 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dc698d09-b323-4895-8908-fd80e5ca9f74 # Target file: checkm_output/bins/pGCA_002148215.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002148215.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dc698d09-b323-4895-8908-fd80e5ca9f74 checkm_output/bins/pGCA_002148215.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:48 2020 # [ok]