# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 8_5 - 387 UPF0020 PF01170.13 180 7.2e-06 19.7 0.0 1 1 5.5e-08 1.2e-05 19.0 0.0 30 118 233 319 224 328 0.86 # 2624 # 3784 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.445 6_8 - 613 CoA_binding_2 PF13380.1 116 0.0018 12.5 0.8 1 1 3.6e-05 0.0082 10.4 0.8 13 106 339 463 330 467 0.70 # 6497 # 8335 # 1 # ID=6_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.545 3_9 - 206 Seryl_tRNA_N PF02403.17 108 0.0058 10.7 7.2 1 1 1.3e-05 0.0029 11.7 4.9 37 90 29 82 24 99 0.81 # 6727 # 7344 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.414 1_39 - 437 Terminase_6 PF03237.10 384 1.3e-36 120.2 4.8 1 1 1.3e-38 1.5e-36 120.0 4.8 2 382 30 401 29 403 0.93 # 18171 # 19481 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.423 6_1 - 316 Terminase_6 PF03237.10 384 0.0015 11.3 0.0 1 1 1.8e-05 0.002 10.9 0.0 79 166 24 114 3 144 0.78 # 23 # 970 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.552 1_23 - 257 IstB_IS21 PF01695.12 178 4.5e-15 49.6 0.2 1 1 5e-17 1.1e-14 48.2 0.2 45 137 97 201 63 236 0.70 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_22 - 267 MipZ PF09140.6 261 1.4e-12 41.3 0.0 1 2 3.5e-10 1.6e-08 28.0 0.0 2 72 4 73 3 96 0.83 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 3_22 - 267 MipZ PF09140.6 261 1.4e-12 41.3 0.0 2 2 4.3e-05 0.002 11.3 0.0 74 123 104 153 84 159 0.81 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 9_3 - 300 MipZ PF09140.6 261 2.7e-09 30.5 1.3 1 1 1e-08 4.6e-07 23.2 1.3 1 114 3 139 3 152 0.57 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_69 - 260 MipZ PF09140.6 261 6.5e-08 26.0 0.0 1 2 5.5e-06 0.00025 14.2 0.0 7 42 7 42 1 63 0.85 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_69 - 260 MipZ PF09140.6 261 6.5e-08 26.0 0.0 2 2 0.00019 0.0088 9.2 0.0 79 120 102 141 88 149 0.76 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_19 - 50 MipZ PF09140.6 261 5.4e-07 23.0 0.0 1 1 1.3e-08 5.9e-07 22.8 0.0 2 40 4 42 3 47 0.93 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_18 - 221 MipZ PF09140.6 261 5.3e-05 16.4 0.0 1 1 1.7e-06 7.8e-05 15.9 0.0 61 125 41 104 26 112 0.76 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_69 - 260 YhjQ PF06564.7 244 1.8e-09 31.4 0.0 1 1 1.2e-10 4.4e-09 30.1 0.0 9 154 8 156 2 166 0.82 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 3_22 - 267 YhjQ PF06564.7 244 3.9e-09 30.2 0.0 1 1 1.7e-10 6.3e-09 29.6 0.0 7 151 8 162 3 180 0.79 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 9_3 - 300 YhjQ PF06564.7 244 5.2e-07 23.3 0.0 1 1 1.6e-08 6.3e-07 23.0 0.0 3 148 4 154 1 207 0.77 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_15 - 244 YhjQ PF06564.7 244 8e-06 19.4 0.0 1 1 2.8e-07 1.1e-05 19.0 0.0 56 153 40 139 1 163 0.64 # 13095 # 13826 # -1 # ID=4_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 2_18 - 221 YhjQ PF06564.7 244 7.1e-05 16.3 0.0 1 1 2.6e-06 0.0001 15.8 0.0 62 151 21 111 5 130 0.83 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 2_19 - 50 YhjQ PF06564.7 244 0.00055 13.4 0.0 1 1 1.4e-05 0.00055 13.4 0.0 6 41 7 42 1 47 0.88 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 5_4 - 459 3HCDH_N PF02737.13 180 8.3e-07 22.9 0.5 1 2 7.2e-08 8.2e-06 19.6 0.2 1 51 154 205 154 247 0.66 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 3HCDH_N PF02737.13 180 8.3e-07 22.9 0.5 2 2 0.039 4.5 0.9 0.0 122 147 301 326 295 335 0.66 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 3HCDH_N PF02737.13 180 0.0013 12.5 0.0 1 1 1.7e-05 0.0019 11.9 0.0 1 52 149 201 149 238 0.76 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 GIDA PF01134.17 392 4.1e-06 19.9 0.1 1 2 0.025 2.9 0.6 0.0 1 40 5 45 5 64 0.79 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 GIDA PF01134.17 392 4.1e-06 19.9 0.1 2 2 3.9e-07 4.4e-05 16.5 0.1 2 29 155 185 154 214 0.84 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 GIDA PF01134.17 392 0.00011 15.1 0.2 1 2 0.0043 0.49 3.2 0.0 92 150 59 115 17 127 0.79 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 GIDA PF01134.17 392 0.00011 15.1 0.2 2 2 6.5e-05 0.0074 9.2 0.0 2 30 150 178 149 203 0.84 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_19 - 144 SSB PF00436.20 104 1.4e-38 125.1 0.5 1 1 8.3e-41 1.9e-38 124.6 0.5 1 104 2 103 2 103 0.98 # 9479 # 9910 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 5_4 - 459 Pyr_redox_2 PF07992.9 201 3.5e-34 112.5 0.0 1 1 7.2e-36 8.2e-34 111.3 0.0 1 197 5 286 5 290 0.94 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 Pyr_redox_2 PF07992.9 201 9.3e-30 98.0 0.1 1 1 1.5e-30 1.7e-28 93.9 0.1 1 200 11 285 11 286 0.91 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 3_12 - 672 DUF87 PF01935.12 229 1.6e-07 25.4 2.4 1 2 0.051 12 -0.3 0.3 133 181 119 160 77 195 0.46 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 DUF87 PF01935.12 229 1.6e-07 25.4 2.4 2 2 7.2e-10 1.6e-07 25.4 2.4 16 223 262 480 257 485 0.66 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 AAA_22 PF13401.1 131 2.8e-05 18.4 0.2 1 2 1.2e-05 0.0027 11.9 0.1 8 101 273 363 267 387 0.69 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 AAA_22 PF13401.1 131 2.8e-05 18.4 0.2 2 2 0.0063 1.4 3.1 0.0 71 108 484 520 453 549 0.69 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 1_69 - 260 ATP_bind_1 PF03029.12 238 0.00016 15.3 0.4 1 1 3.5e-06 0.0008 13.0 0.4 6 112 11 141 9 223 0.75 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 3_8 - 157 tRNA_anti-like PF12869.2 144 4.5e-05 17.0 0.0 1 1 3.2e-07 7.3e-05 16.4 0.0 6 60 70 139 67 142 0.87 # 5901 # 6371 # -1 # ID=3_8;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.414 1_27 - 214 DNA_methylase PF00145.12 335 1.2e-06 21.9 0.0 1 1 7.1e-09 1.6e-06 21.5 0.0 36 116 45 126 25 138 0.79 # 13789 # 14430 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_69 - 260 SRP54 PF00448.17 196 0.00065 13.2 0.1 1 2 0.0012 0.27 4.7 0.0 11 49 11 48 6 69 0.80 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_69 - 260 SRP54 PF00448.17 196 0.00065 13.2 0.1 2 2 0.00035 0.08 6.4 0.1 65 155 102 192 85 202 0.78 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 5_3 - 402 NAD_binding_7 PF13241.1 103 2e-10 35.0 0.1 1 2 3.3e-05 0.0037 11.6 0.0 7 71 9 92 5 113 0.68 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 NAD_binding_7 PF13241.1 103 2e-10 35.0 0.1 2 2 3.7e-08 4.2e-06 21.1 0.0 7 41 147 186 144 240 0.75 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 NAD_binding_7 PF13241.1 103 0.00044 14.6 0.0 1 1 1.2e-05 0.0013 13.0 0.0 5 39 150 184 147 252 0.79 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 3_12 - 672 AAA_17 PF13207.1 121 0.067 8.1 7.7 1 1 0.0018 0.42 5.5 5.5 3 16 273 286 273 602 0.94 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 10_1 - 500 AAA_21 PF13304.1 303 0.0022 12.0 0.1 1 1 1.5e-05 0.0034 11.4 0.1 2 31 370 401 369 435 0.79 # 511 # 2010 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 3_22 - 267 ArsA_ATPase PF02374.10 305 7.2e-13 42.2 0.0 1 1 2.3e-14 1e-12 41.7 0.0 3 137 4 139 2 181 0.85 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_69 - 260 ArsA_ATPase PF02374.10 305 1e-12 41.7 0.1 1 1 8.6e-14 3.9e-12 39.8 0.1 4 137 4 130 1 134 0.76 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_19 - 50 ArsA_ATPase PF02374.10 305 2.8e-10 33.7 0.1 1 1 6.9e-12 3.1e-10 33.6 0.1 4 39 5 41 2 44 0.88 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 9_3 - 300 ArsA_ATPase PF02374.10 305 7.7e-06 19.2 4.8 1 2 5.1e-06 0.00023 14.3 1.5 9 136 11 133 3 136 0.63 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 9_3 - 300 ArsA_ATPase PF02374.10 305 7.7e-06 19.2 4.8 2 2 0.0081 0.37 3.8 0.1 235 281 136 184 134 193 0.82 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_18 - 221 ArsA_ATPase PF02374.10 305 0.001 12.2 0.0 1 1 4.5e-05 0.002 11.2 0.0 116 137 65 88 14 93 0.83 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_23 - 257 PhoH PF02562.11 205 0.00021 14.6 0.1 1 2 2.1e-05 0.0047 10.2 0.0 14 47 93 127 81 144 0.73 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 PhoH PF02562.11 205 0.00021 14.6 0.1 2 2 0.0056 1.3 2.3 0.0 55 114 159 221 147 233 0.72 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 Ras PF00071.17 162 0.0014 12.1 0.1 1 2 0.099 22 -1.6 0.0 114 135 20 44 11 56 0.54 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 Ras PF00071.17 162 0.0014 12.1 0.1 2 2 2.1e-05 0.0049 10.3 0.0 2 19 102 119 101 153 0.89 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_3 - 402 Shikimate_DH PF01488.15 135 0.0007 13.8 0.1 1 2 0.0089 2 2.6 0.0 9 41 6 39 2 45 0.79 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Shikimate_DH PF01488.15 135 0.0007 13.8 0.1 2 2 0.00018 0.042 8.0 0.0 12 38 147 173 137 177 0.79 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 NAD_binding_8 PF13450.1 68 1.7e-05 18.9 0.1 1 2 0.0086 2 2.7 0.0 1 31 8 40 8 45 0.85 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 NAD_binding_8 PF13450.1 68 1.7e-05 18.9 0.1 2 2 4.1e-06 0.00093 13.3 0.0 1 38 157 194 157 217 0.86 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 F420_oxidored PF03807.12 96 0.0038 11.8 1.3 1 2 0.029 6.7 1.3 0.4 3 35 13 43 11 100 0.85 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 F420_oxidored PF03807.12 96 0.0038 11.8 1.3 2 2 0.00018 0.04 8.5 0.0 1 30 149 175 149 192 0.88 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 3_22 - 267 VirC1 PF07015.6 231 9.2e-07 22.2 0.2 1 1 2.6e-08 2e-06 21.1 0.2 3 39 4 40 2 55 0.90 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_69 - 260 VirC1 PF07015.6 231 0.00016 14.9 0.1 1 2 0.00018 0.014 8.5 0.0 8 40 7 39 1 56 0.83 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 1_69 - 260 VirC1 PF07015.6 231 0.00016 14.9 0.1 2 2 0.0034 0.26 4.3 0.0 63 131 100 167 88 187 0.68 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_19 - 50 VirC1 PF07015.6 231 0.00017 14.7 0.0 1 1 2.5e-06 0.00019 14.6 0.0 2 39 3 40 2 46 0.85 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 3_22 - 267 Fer4_NifH PF00142.13 273 9e-07 22.4 0.9 1 1 2.9e-08 1.7e-06 21.5 0.0 8 52 11 55 3 84 0.85 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_69 - 260 Fer4_NifH PF00142.13 273 1.5e-05 18.4 0.1 1 1 1e-06 5.7e-05 16.4 0.0 8 50 9 51 4 63 0.85 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 9_3 - 300 Fer4_NifH PF00142.13 273 3.2e-05 17.2 0.1 1 1 5.7e-07 3.2e-05 17.2 0.1 8 49 11 52 4 77 0.85 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 2_19 - 50 Fer4_NifH PF00142.13 273 0.00023 14.5 0.0 1 1 4.2e-06 0.00024 14.4 0.0 8 40 11 43 3 47 0.92 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 1_23 - 257 Arch_ATPase PF01637.13 234 0.00022 15.0 0.0 1 1 4.1e-06 0.00047 13.9 0.0 13 82 93 155 90 215 0.77 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 672 Arch_ATPase PF01637.13 234 0.0024 11.6 7.0 1 1 8e-06 0.00091 13.0 2.5 20 135 269 391 262 500 0.79 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 1_23 - 257 AAA_16 PF13191.1 185 0.00015 15.8 0.0 1 1 2.7e-06 0.00031 14.8 0.0 26 52 101 129 87 164 0.82 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 672 AAA_16 PF13191.1 185 0.0009 13.3 0.2 1 2 0.001 0.12 6.4 0.0 25 40 270 285 258 304 0.75 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 AAA_16 PF13191.1 185 0.0009 13.3 0.2 2 2 0.0086 0.98 3.4 0.0 115 162 466 510 405 524 0.85 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 10_1 - 500 AAA_23 PF13476.1 202 0.0022 12.4 0.0 1 1 1.7e-05 0.0038 11.6 0.0 15 39 360 387 348 389 0.81 # 511 # 2010 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 9_5 - 260 AAA_13 PF13166.1 712 0.01 8.3 15.9 1 1 7.5e-05 0.017 7.6 15.9 323 471 75 213 49 229 0.54 # 4496 # 5275 # 1 # ID=9_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 3_22 - 267 CbiA PF01656.18 195 9.6e-31 100.7 0.0 1 1 3.2e-32 1.2e-30 100.4 0.0 1 193 5 232 5 234 0.79 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_69 - 260 CbiA PF01656.18 195 2.8e-29 95.9 0.2 1 1 9.3e-31 3.5e-29 95.6 0.2 5 183 7 210 3 221 0.75 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 9_3 - 300 CbiA PF01656.18 195 1.9e-25 83.5 0.4 1 1 6.1e-27 2.3e-25 83.2 0.4 1 193 5 228 5 230 0.74 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_15 - 244 CbiA PF01656.18 195 1.3e-21 71.0 0.3 1 1 4.3e-23 1.6e-21 70.6 0.3 23 189 3 203 1 209 0.76 # 13095 # 13826 # -1 # ID=4_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 2_18 - 221 CbiA PF01656.18 195 7.5e-17 55.4 0.1 1 1 2.4e-18 9.3e-17 55.1 0.1 78 191 62 179 10 183 0.76 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 2_19 - 50 CbiA PF01656.18 195 1.3e-12 41.5 0.1 1 1 3.9e-14 1.5e-12 41.4 0.1 1 38 5 42 5 45 0.95 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 3_12 - 672 AAA_14 PF13173.1 128 0.00017 15.6 6.5 1 3 6.5e-06 0.00074 13.5 0.3 3 81 270 370 268 381 0.66 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 AAA_14 PF13173.1 128 0.00017 15.6 6.5 2 3 0.074 8.4 0.4 0.0 93 123 442 471 406 476 0.79 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 AAA_14 PF13173.1 128 0.00017 15.6 6.5 3 3 0.012 1.4 3.0 0.0 34 91 464 528 457 563 0.53 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 1_23 - 257 AAA_14 PF13173.1 128 0.00038 14.5 0.0 1 1 5.8e-06 0.00066 13.7 0.0 2 74 99 177 98 238 0.65 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_3 - 402 HI0933_like PF03486.9 409 7.3e-08 25.3 0.1 1 3 3.5e-05 0.004 9.7 0.0 122 165 76 116 70 127 0.84 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 HI0933_like PF03486.9 409 7.3e-08 25.3 0.1 2 3 0.00053 0.06 5.8 0.0 2 36 149 183 148 190 0.89 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 HI0933_like PF03486.9 409 7.3e-08 25.3 0.1 3 3 0.00037 0.042 6.3 0.0 114 163 194 242 185 249 0.87 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 HI0933_like PF03486.9 409 1.5e-06 20.9 0.7 1 3 0.004 0.46 2.9 0.0 117 163 67 115 14 119 0.78 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 HI0933_like PF03486.9 409 1.5e-06 20.9 0.7 2 3 1.5e-05 0.0017 10.9 0.1 2 35 154 187 153 192 0.91 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 HI0933_like PF03486.9 409 1.5e-06 20.9 0.7 3 3 0.002 0.23 3.9 0.0 110 164 195 247 193 251 0.87 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 10_1 - 500 AAA_29 PF13555.1 62 0.0003 14.4 0.0 1 1 3.7e-06 0.00085 13.0 0.0 17 40 362 384 356 391 0.83 # 511 # 2010 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 4_3 - 306 FAD_binding_2 PF00890.19 417 0.00062 12.7 0.0 1 1 6.9e-06 0.00079 12.4 0.0 258 354 103 212 77 248 0.79 # 1437 # 2354 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.411 5_4 - 459 FAD_binding_2 PF00890.19 417 0.0012 11.7 0.1 1 4 0.031 3.5 0.4 0.0 152 204 70 119 65 149 0.77 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 FAD_binding_2 PF00890.19 417 0.0012 11.7 0.1 2 4 0.0014 0.16 4.8 0.1 3 29 156 182 154 187 0.91 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 FAD_binding_2 PF00890.19 417 0.0012 11.7 0.1 3 4 0.026 2.9 0.6 0.0 376 402 266 286 254 295 0.90 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 FAD_binding_2 PF00890.19 417 0.0012 11.7 0.1 4 4 0.086 9.7 -1.1 0.0 218 247 400 427 388 436 0.78 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 1_23 - 257 AAA PF00004.24 132 6.8e-07 23.6 0.1 1 1 4.6e-09 1.1e-06 23.0 0.1 1 116 102 225 102 238 0.68 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 Bac_DnaA PF00308.13 219 0.0004 14.1 0.1 1 1 2.9e-06 0.00066 13.4 0.1 23 106 88 173 64 180 0.79 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 672 TK PF00265.13 176 0.00096 12.8 3.0 1 3 0.084 19 -1.2 0.2 32 77 93 139 86 174 0.76 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 TK PF00265.13 176 0.00096 12.8 3.0 2 3 9.7e-06 0.0022 11.6 0.0 4 41 272 309 269 364 0.79 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 TK PF00265.13 176 0.00096 12.8 3.0 3 3 0.041 9.4 -0.2 0.1 57 89 479 511 465 523 0.61 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 1_23 - 257 Sigma54_activat PF00158.21 168 7.4e-05 16.3 0.1 1 1 7.1e-07 0.00016 15.2 0.1 10 55 87 134 80 143 0.82 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_3 - 402 Pyr_redox_3 PF13738.1 203 4.6e-14 47.0 0.1 1 2 1.1e-13 1.2e-11 39.1 0.0 95 200 76 180 59 183 0.84 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Pyr_redox_3 PF13738.1 203 4.6e-14 47.0 0.1 2 2 0.0032 0.37 4.9 0.0 84 142 191 247 184 295 0.79 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 Pyr_redox_3 PF13738.1 203 9.6e-13 42.7 0.1 1 3 0.011 1.2 3.1 0.0 167 195 3 33 1 38 0.78 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 Pyr_redox_3 PF13738.1 203 9.6e-13 42.7 0.1 2 3 3.2e-12 3.6e-10 34.3 0.0 94 197 71 182 61 188 0.85 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 Pyr_redox_3 PF13738.1 203 9.6e-13 42.7 0.1 3 3 0.04 4.5 1.3 0.0 86 158 198 270 189 288 0.73 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 8_6 - 1056 Ribosomal_L10 PF00466.15 100 0.00017 15.5 5.2 1 3 0.0002 0.045 7.8 0.4 34 82 344 398 337 415 0.81 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 8_6 - 1056 Ribosomal_L10 PF00466.15 100 0.00017 15.5 5.2 2 3 0.00022 0.049 7.7 0.0 50 67 478 495 456 523 0.79 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 8_6 - 1056 Ribosomal_L10 PF00466.15 100 0.00017 15.5 5.2 3 3 0.088 20 -0.7 0.1 48 80 760 789 753 801 0.82 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 8_5 - 387 N6_Mtase PF02384.11 311 9.4e-71 232.4 0.0 1 1 1.5e-72 1.7e-70 231.6 0.0 2 193 181 377 180 383 0.94 # 2624 # 3784 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.445 8_4 - 130 N6_Mtase PF02384.11 311 5.7e-25 82.0 1.8 1 1 6.6e-27 7.5e-25 81.6 1.8 228 308 1 78 1 81 0.96 # 2163 # 2552 # -1 # ID=8_4;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.405 1_23 - 257 DUF258 PF03193.11 161 0.00034 13.9 0.2 1 1 6.9e-06 0.00052 13.3 0.2 28 85 90 158 73 228 0.67 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 10_1 - 500 DUF258 PF03193.11 161 0.0017 11.7 0.0 1 1 3.9e-05 0.003 10.8 0.0 26 57 357 389 336 409 0.73 # 511 # 2010 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 3_12 - 672 DUF258 PF03193.11 161 0.0019 11.5 0.0 1 1 6.4e-05 0.0048 10.1 0.0 34 51 268 285 249 301 0.78 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_7 - 517 TraG-D_C PF12696.2 128 2.7e-42 137.7 0.0 1 1 2.4e-44 2.7e-42 137.7 0.0 2 128 282 405 281 405 0.91 # 4349 # 5899 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 672 TraG-D_C PF12696.2 128 9e-05 16.4 0.3 1 1 5.4e-06 0.00061 13.7 0.3 15 100 517 632 501 661 0.62 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_22 - 267 AAA_31 PF13614.1 157 1.2e-12 42.0 0.1 1 1 7.3e-14 2.8e-12 40.9 0.1 2 151 4 161 3 166 0.85 # 18158 # 18958 # 1 # ID=3_22;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_69 - 260 AAA_31 PF13614.1 157 3.7e-11 37.3 0.3 1 1 1.2e-11 4.4e-10 33.8 0.3 9 150 9 151 6 158 0.77 # 43446 # 44225 # -1 # ID=1_69;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 9_3 - 300 AAA_31 PF13614.1 157 1e-10 35.8 1.3 1 1 7.7e-11 2.9e-09 31.1 1.3 2 150 4 155 3 159 0.78 # 743 # 1642 # -1 # ID=9_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 4_15 - 244 AAA_31 PF13614.1 157 2.2e-08 28.3 0.7 1 1 2.1e-09 8e-08 26.4 0.7 24 154 2 139 1 142 0.72 # 13095 # 13826 # -1 # ID=4_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 2_19 - 50 AAA_31 PF13614.1 157 5.4e-06 20.5 0.0 1 1 1.5e-07 5.6e-06 20.4 0.0 3 40 5 42 3 47 0.89 # 18113 # 18262 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.367 2_18 - 221 AAA_31 PF13614.1 157 1.7e-05 18.9 0.1 1 1 7.3e-07 2.8e-05 18.2 0.1 105 149 65 108 18 113 0.84 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 8_5 - 387 Methyltransf_26 PF13659.1 117 9.6e-12 39.1 0.0 1 1 1e-13 2.3e-11 37.9 0.0 3 116 234 368 232 369 0.78 # 2624 # 3784 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.445 5_3 - 402 NAD_Gly3P_dh_N PF01210.18 157 5.2e-05 17.1 0.0 1 1 4.3e-07 9.7e-05 16.2 0.0 2 33 150 181 149 208 0.84 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 2-Hacid_dh_C PF02826.14 178 0.0013 12.0 0.0 1 1 1.5e-05 0.0034 10.6 0.0 17 70 133 186 128 204 0.86 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 ApbA PF02558.11 151 0.0012 12.3 0.0 1 1 2e-05 0.0045 10.5 0.0 1 31 150 180 150 234 0.91 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 3_12 - 672 FtsK_SpoIIIE PF01580.13 205 8.2e-05 16.2 0.0 1 1 9.4e-07 0.00021 14.8 0.0 40 80 271 307 250 320 0.78 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 8_5 - 387 MTS PF05175.9 170 0.00032 14.2 0.0 1 1 2.8e-06 0.00063 13.2 0.0 34 138 234 365 212 372 0.67 # 2624 # 3784 # -1 # ID=8_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.445 5_4 - 459 CoA_binding PF02629.14 96 0.0014 13.2 1.4 1 1 6.1e-05 0.014 10.0 0.0 2 26 2 26 1 38 0.81 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 Lycopene_cycl PF05834.7 374 0.00013 15.0 0.0 1 4 0.058 13 -1.5 0.0 3 38 13 48 12 61 0.80 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Lycopene_cycl PF05834.7 374 0.00013 15.0 0.0 2 4 0.099 23 -2.2 0.0 106 143 83 118 75 129 0.82 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Lycopene_cycl PF05834.7 374 0.00013 15.0 0.0 3 4 7.9e-05 0.018 7.9 0.0 2 30 150 176 149 186 0.79 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Lycopene_cycl PF05834.7 374 0.00013 15.0 0.0 4 4 0.0024 0.54 3.1 0.0 94 149 196 254 188 270 0.74 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 10_1 - 500 ABC_tran PF00005.22 137 1.5e-18 61.5 0.0 1 1 1.2e-20 2.8e-18 60.6 0.0 1 92 357 455 357 485 0.83 # 511 # 2010 # -1 # ID=10_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 5_4 - 459 K_oxygenase PF13434.1 341 1.5e-06 21.4 0.0 1 2 0.066 7.6 -0.7 0.0 189 221 2 34 1 43 0.86 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 K_oxygenase PF13434.1 341 1.5e-06 21.4 0.0 2 2 5.9e-08 6.7e-06 19.2 0.0 107 223 71 186 66 214 0.81 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 K_oxygenase PF13434.1 341 2.1e-06 20.9 0.1 1 3 0.083 9.5 -1.0 0.0 188 224 7 43 2 72 0.80 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 K_oxygenase PF13434.1 341 2.1e-06 20.9 0.1 2 3 2.8e-07 3.2e-05 17.0 0.0 112 222 80 177 53 185 0.74 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 K_oxygenase PF13434.1 341 2.1e-06 20.9 0.1 3 3 0.034 3.9 0.3 0.0 130 161 220 247 191 259 0.72 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_4 - 459 UDPG_MGDP_dh_N PF03721.9 185 3.7e-05 17.2 0.4 1 1 8.8e-07 0.0001 15.8 0.1 2 31 154 183 153 240 0.88 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 UDPG_MGDP_dh_N PF03721.9 185 0.00037 14.0 0.0 1 1 6e-06 0.00068 13.1 0.0 2 29 149 176 148 181 0.93 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 3_12 - 672 AAA_10 PF12846.2 304 4.7e-54 177.9 0.7 1 1 4.2e-56 4.7e-54 177.9 0.7 1 294 269 578 269 587 0.86 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_7 - 517 AAA_10 PF12846.2 304 7e-15 49.2 0.2 1 1 8.5e-17 9.6e-15 48.8 0.2 1 302 23 362 23 364 0.73 # 4349 # 5899 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 2_15 - 308 DNA_photolyase PF00875.13 165 2.2e-06 21.6 0.6 1 1 1.7e-08 3.8e-06 20.8 0.1 28 115 174 261 163 287 0.76 # 15294 # 16217 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.440 5_4 - 459 DAO PF01266.19 358 9.2e-12 38.5 0.1 1 3 5.4e-05 0.0062 9.5 0.0 158 206 70 121 66 137 0.82 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 DAO PF01266.19 358 9.2e-12 38.5 0.1 2 3 3.7e-06 0.00042 13.3 0.1 2 30 155 183 154 190 0.92 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 DAO PF01266.19 358 9.2e-12 38.5 0.1 3 3 9.6e-06 0.0011 11.9 0.0 149 203 196 249 192 308 0.87 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 DAO PF01266.19 358 2.3e-11 37.2 3.9 1 3 2.9e-05 0.0033 10.4 0.0 161 212 77 126 60 144 0.81 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 DAO PF01266.19 358 2.3e-11 37.2 3.9 2 3 1.6e-05 0.0018 11.2 0.0 2 28 150 176 149 186 0.88 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 DAO PF01266.19 358 2.3e-11 37.2 3.9 3 3 1.2e-06 0.00014 14.9 0.0 154 202 196 244 188 283 0.91 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 8_6 - 1056 ResIII PF04851.10 184 1.9e-33 109.9 0.8 1 2 8.2e-36 1.9e-33 109.9 0.8 4 183 261 431 258 432 0.92 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 8_6 - 1056 ResIII PF04851.10 184 1.9e-33 109.9 0.8 2 2 0.093 21 -1.1 0.4 97 167 934 1012 875 1023 0.51 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 5_3 - 402 NAD_binding_9 PF13454.1 156 4.5e-07 23.8 2.4 1 4 0.036 8.1 0.3 0.0 1 33 13 42 13 59 0.78 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 NAD_binding_9 PF13454.1 156 4.5e-07 23.8 2.4 2 4 0.00015 0.035 8.0 0.0 117 155 80 115 62 116 0.77 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 NAD_binding_9 PF13454.1 156 4.5e-07 23.8 2.4 3 4 0.00089 0.2 5.5 0.0 1 38 151 184 151 195 0.76 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 NAD_binding_9 PF13454.1 156 4.5e-07 23.8 2.4 4 4 0.0002 0.047 7.5 0.0 101 154 189 242 177 244 0.76 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 8_6 - 1056 DEAD PF00270.24 169 4.7e-11 36.5 0.6 1 2 5.6e-12 1.3e-09 31.9 0.1 3 141 264 415 262 436 0.70 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 8_6 - 1056 DEAD PF00270.24 169 4.7e-11 36.5 0.6 2 2 0.0089 2 1.9 0.1 45 92 504 619 457 639 0.68 # 3798 # 6965 # -1 # ID=8_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.447 1_23 - 257 DUF815 PF05673.8 250 8.9e-07 22.1 0.1 1 1 6.9e-09 1.6e-06 21.3 0.1 53 120 99 177 83 199 0.91 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 16_4 - 105 DUF1315 PF07023.7 94 0.0015 12.5 0.0 1 1 1e-05 0.0024 11.9 0.0 33 71 61 97 57 103 0.88 # 2245 # 2559 # 1 # ID=16_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.419 5_4 - 459 Pyr_redox PF00070.22 80 5.7e-21 68.8 4.1 1 2 0.0027 0.31 5.6 0.2 49 78 68 95 58 100 0.85 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_4 - 459 Pyr_redox PF00070.22 80 5.7e-21 68.8 4.1 2 2 3e-21 3.4e-19 63.2 0.6 2 78 155 232 154 235 0.95 # 3168 # 4544 # 1 # ID=5_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=11-12bp;gc_cont=0.405 5_3 - 402 Pyr_redox PF00070.22 80 6e-16 52.7 7.3 1 2 0.0048 0.55 4.8 0.0 51 77 72 98 52 102 0.69 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 Pyr_redox PF00070.22 80 6e-16 52.7 7.3 2 2 1.1e-16 1.2e-14 48.5 0.0 1 74 149 223 149 229 0.93 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 3_7 - 517 TrwB_AAD_bind PF10412.4 386 2e-35 116.1 0.4 1 1 2.5e-36 2.8e-34 112.4 0.0 13 381 21 419 15 423 0.74 # 4349 # 5899 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 3_12 - 672 TrwB_AAD_bind PF10412.4 386 1.2e-06 21.4 0.1 1 2 3.1e-05 0.0036 10.0 0.0 12 56 266 310 256 317 0.75 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 3_12 - 672 TrwB_AAD_bind PF10412.4 386 1.2e-06 21.4 0.1 2 2 6.4e-05 0.0073 9.0 0.0 237 312 492 574 478 663 0.84 # 9924 # 11939 # -1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.420 4_15 - 244 ParA PF10609.4 81 0.00041 14.3 2.1 1 1 6e-06 0.00069 13.6 0.1 2 51 105 152 104 157 0.78 # 13095 # 13826 # -1 # ID=4_15;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.363 2_18 - 221 ParA PF10609.4 81 0.00048 14.1 0.0 1 1 8.5e-06 0.00097 13.1 0.0 2 52 79 127 78 143 0.79 # 17454 # 18116 # -1 # ID=2_18;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_39 - 437 Terminase_3 PF04466.8 387 1.7e-11 37.9 3.6 1 1 4.4e-13 1e-10 35.3 3.6 101 386 129 401 114 402 0.71 # 18171 # 19481 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.423 3_7 - 517 T4SS-DNA_transf PF02534.9 469 7.8e-132 434.1 6.5 1 1 4.7e-134 1.1e-131 433.7 6.5 45 450 24 453 5 496 0.93 # 4349 # 5899 # -1 # ID=3_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 AAA_32 PF13654.1 509 4.6e-05 16.2 0.0 1 1 4.4e-07 9.9e-05 15.1 0.0 13 54 82 123 71 129 0.85 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 Pox_A32 PF04665.7 241 3.4e-05 17.3 0.4 1 1 3.8e-07 8.7e-05 15.9 0.0 7 55 93 146 86 151 0.77 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 RNA_helicase PF00910.17 107 0.00011 16.5 0.3 1 1 1.3e-06 0.0003 15.0 0.2 1 72 102 189 102 220 0.74 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 UPF0079 PF02367.12 123 0.00033 14.4 0.4 1 2 0.026 6 0.6 0.1 61 84 15 38 6 45 0.76 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 UPF0079 PF02367.12 123 0.00033 14.4 0.4 2 2 1.3e-05 0.003 11.3 0.0 8 40 91 127 81 150 0.75 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 5_3 - 402 TrkA_N PF02254.13 116 7.2e-05 16.9 0.7 1 2 0.012 1.4 3.1 0.1 1 31 12 44 12 52 0.84 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 TrkA_N PF02254.13 116 7.2e-05 16.9 0.7 2 2 3.2e-05 0.0036 11.4 0.0 1 27 150 176 150 182 0.89 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 2_12 - 234 TrkA_N PF02254.13 116 0.00024 15.2 0.1 1 1 4.1e-06 0.00047 14.3 0.1 23 112 4 99 1 103 0.81 # 11132 # 11833 # 1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.346 5_3 - 402 AlaDh_PNT_C PF01262.16 168 0.0036 10.9 3.0 1 3 0.0092 2.1 1.9 0.0 21 37 10 26 4 44 0.83 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 AlaDh_PNT_C PF01262.16 168 0.0036 10.9 3.0 2 3 0.00026 0.06 7.0 0.2 21 51 148 175 144 218 0.68 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 5_3 - 402 AlaDh_PNT_C PF01262.16 168 0.0036 10.9 3.0 3 3 0.032 7.2 0.2 0.1 5 30 218 243 214 244 0.88 # 1847 # 3052 # 1 # ID=5_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_19 - 144 tRNA_anti-codon PF01336.20 75 8.8e-08 26.0 0.2 1 1 1.5e-09 1.7e-07 25.1 0.1 27 71 47 94 37 103 0.79 # 9479 # 9910 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.426 9_7 - 214 tRNA_anti-codon PF01336.20 75 0.00024 15.0 0.1 1 1 5.7e-06 0.00065 13.7 0.0 18 72 144 201 122 204 0.82 # 5498 # 6139 # 1 # ID=9_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.470 1_23 - 257 AAA_24 PF13479.1 213 0.00017 15.3 0.0 1 1 2.8e-06 0.00063 13.4 0.0 2 23 98 119 97 124 0.87 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 AAA_25 PF13481.1 194 0.00065 13.2 0.2 1 2 1.6e-05 0.0037 10.7 0.0 36 60 102 127 73 137 0.77 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 AAA_25 PF13481.1 194 0.00065 13.2 0.2 2 2 0.037 8.5 -0.2 0.0 107 150 134 172 130 182 0.76 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_23 - 257 AAA_5 PF07728.9 139 0.0012 12.6 0.4 1 1 1.8e-05 0.0041 10.9 0.4 1 75 101 174 101 236 0.61 # 12203 # 12973 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.431 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/24f5382b-02a6-457c-a33b-048bc5633fe4 # Target file: checkm_output/bins/pGCA_002117225.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002117225.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/24f5382b-02a6-457c-a33b-048bc5633fe4 checkm_output/bins/pGCA_002117225.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:31 2020 # [ok]