# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 246 Methyltransf_32 PF13679.1 141 0.00083 12.2 0.0 1 1 1.1e-05 0.0013 11.5 0.0 21 77 32 83 21 130 0.79 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 246 Methyltransf_12 PF08242.7 99 1e-06 22.3 0.2 1 2 6.8e-08 7.9e-06 19.5 0.1 1 38 41 77 41 132 0.83 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 246 Methyltransf_12 PF08242.7 99 1e-06 22.3 0.2 2 2 0.067 7.9 0.2 0.0 26 58 181 205 163 225 0.57 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_44 - 341 Saccharop_dh PF03435.13 386 0.00048 12.3 0.1 1 1 5.4e-06 0.00063 11.9 0.1 1 50 24 72 24 102 0.79 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_55 - 246 Pox_MCEL PF03291.11 332 0.00029 12.8 0.0 1 1 3.8e-06 0.00044 12.3 0.0 60 109 33 82 22 132 0.80 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_51 - 302 MipZ PF09140.6 261 2.1e-12 39.7 0.4 1 2 3.2e-08 3.8e-06 19.3 0.0 2 49 15 63 14 74 0.88 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_51 - 302 MipZ PF09140.6 261 2.1e-12 39.7 0.4 2 2 7.3e-08 8.6e-06 18.1 0.1 61 127 116 185 107 191 0.68 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_44 - 341 3HCDH_N PF02737.13 180 0.00061 12.6 0.0 1 1 1e-05 0.0012 11.6 0.0 1 68 23 88 23 104 0.79 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_55 - 246 Methyltransf_18 PF12847.2 112 2.5e-08 27.7 0.0 1 2 2.6e-09 3.1e-07 24.1 0.0 2 99 37 124 36 144 0.69 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 246 Methyltransf_18 PF12847.2 112 2.5e-08 27.7 0.0 2 2 0.035 4.2 1.2 0.0 30 60 180 213 166 230 0.76 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 1946 UvrD_C_2 PF13538.1 104 3e-06 20.5 1.0 1 1 1.4e-07 1.7e-05 18.1 0.0 17 101 1381 1492 1355 1495 0.65 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_44 - 341 Gp_dh_N PF00044.19 151 0.00082 12.5 0.1 1 1 1.1e-05 0.0013 11.8 0.1 2 102 23 125 22 143 0.81 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_34 - 850 DUF87 PF01935.12 229 4e-09 29.7 0.1 1 2 0.015 1.7 1.5 0.1 90 155 195 307 167 362 0.67 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_34 - 850 DUF87 PF01935.12 229 4e-09 29.7 0.1 2 2 6e-10 7e-08 25.6 0.0 26 216 482 657 479 670 0.62 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_22 - 1946 AAA_22 PF13401.1 131 8.8e-11 35.2 0.9 1 2 3.7e-08 2.2e-06 21.0 0.1 44 121 483 563 431 568 0.76 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 AAA_22 PF13401.1 131 8.8e-11 35.2 0.9 2 2 6.4e-05 0.0038 10.5 0.1 3 113 1028 1130 1025 1143 0.70 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 1280 AAA_22 PF13401.1 131 0.00042 13.6 0.0 1 1 0.00011 0.0062 9.8 0.0 7 43 238 272 233 294 0.68 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_55 - 246 Methyltransf_11 PF08241.7 95 4.3e-11 36.4 0.1 1 1 8.5e-13 9.9e-11 35.2 0.1 1 94 41 133 41 134 0.94 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_67 - 383 AAA_4 PF04326.9 122 1.6e-18 60.2 0.0 1 1 2.7e-20 3.2e-18 59.2 0.0 1 119 25 148 25 151 0.80 # 71137 # 72285 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.305 1_51 - 302 ArsA_ATPase PF02374.10 305 5.4e-08 25.3 0.0 1 2 5.8e-07 6.8e-05 15.1 0.0 6 46 19 60 14 70 0.86 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_51 - 302 ArsA_ATPase PF02374.10 305 5.4e-08 25.3 0.0 2 2 7.2e-05 0.0084 8.2 0.0 117 138 143 168 113 252 0.72 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_22 - 1946 PhoH PF02562.11 205 6.2e-10 31.7 4.9 1 3 8.6e-05 0.01 8.2 0.0 121 157 532 568 530 611 0.86 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 PhoH PF02562.11 205 6.2e-10 31.7 4.9 2 3 4.6e-07 5.4e-05 15.6 1.0 3 61 1011 1075 1009 1094 0.66 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 PhoH PF02562.11 205 6.2e-10 31.7 4.9 3 3 0.00024 0.028 6.7 0.0 120 161 1105 1147 1099 1177 0.83 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_55 - 246 CMAS PF02353.15 273 0.0001 14.6 2.5 1 1 8.8e-06 0.001 11.3 2.5 61 247 35 212 20 220 0.73 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_44 - 341 Shikimate_DH PF01488.15 135 0.00015 15.1 0.0 1 1 2.7e-06 0.00032 13.9 0.0 10 56 19 65 13 116 0.82 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 2_2 - 122 Cytidylate_kin2 PF13189.1 179 0.00011 15.3 0.0 1 1 1e-06 0.00012 15.1 0.0 73 130 39 96 18 110 0.84 # 1497 # 1862 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_51 - 302 Fer4_NifH PF00142.13 273 0.00024 13.4 0.1 1 2 1.7e-05 0.002 10.4 0.0 8 41 22 56 15 67 0.89 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_51 - 302 Fer4_NifH PF00142.13 273 0.00024 13.4 0.1 2 2 0.027 3.1 -0.1 0.0 214 230 253 269 191 298 0.47 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_5 - 1280 Arch_ATPase PF01637.13 234 0.00019 14.3 0.0 1 1 6e-06 0.00071 12.4 0.0 6 68 222 286 221 375 0.85 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_5 - 1280 AAA_16 PF13191.1 185 1.2e-05 18.4 0.1 1 1 1.6e-06 6.3e-05 16.1 0.0 9 58 224 270 221 366 0.83 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_23 - 618 AAA_16 PF13191.1 185 0.0001 15.4 0.0 1 1 7.6e-06 0.0003 13.9 0.0 20 63 178 230 170 343 0.80 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_22 - 1946 AAA_16 PF13191.1 185 0.0029 10.7 5.7 1 1 0.00012 0.0045 10.1 0.0 25 51 1030 1056 1012 1131 0.77 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 1280 AAA_18 PF13238.1 129 0.0024 11.3 2.8 1 1 0.00017 0.019 8.4 0.1 3 112 240 357 240 360 0.58 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_44 - 341 adh_short PF00106.20 167 3.2e-05 17.0 0.0 1 1 4.8e-07 5.6e-05 16.2 0.0 2 60 23 71 22 142 0.79 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_51 - 302 CbiA PF01656.18 195 4.4e-33 107.4 0.0 1 1 4.9e-35 5.8e-33 107.0 0.0 1 190 16 257 16 262 0.77 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_44 - 341 Polysacc_synt_2 PF02719.10 294 0.00057 11.9 0.1 1 2 0.00011 0.013 7.5 0.0 1 78 24 102 24 108 0.70 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_44 - 341 Polysacc_synt_2 PF02719.10 294 0.00057 11.9 0.1 2 2 0.0043 0.5 2.3 0.0 3 47 186 234 185 250 0.69 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_55 - 246 Methyltransf_25 PF13649.1 101 7.4e-10 32.3 0.2 1 1 1.4e-11 1.6e-09 31.2 0.2 2 92 41 121 40 130 0.78 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 1946 AAA_14 PF13173.1 128 1.3e-06 21.5 0.1 1 2 0.011 0.66 3.0 0.0 55 99 526 568 505 586 0.71 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 AAA_14 PF13173.1 128 1.3e-06 21.5 0.1 2 2 3e-06 0.00018 14.6 0.0 3 92 1030 1135 1028 1156 0.65 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 1280 AAA_14 PF13173.1 128 8.6e-05 15.6 0.0 1 1 1e-05 0.00061 12.8 0.0 6 69 239 303 234 320 0.78 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_44 - 341 KR PF08659.5 181 0.00027 13.8 0.0 1 1 7e-06 0.00082 12.2 0.0 2 36 23 62 22 103 0.67 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_43 - 354 KH_3 PF13014.1 43 0.001 11.9 0.0 1 1 1.6e-05 0.0019 11.0 0.0 9 28 199 218 198 228 0.90 # 47326 # 48387 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_45 - 84 ThiS PF02597.15 77 1.2e-08 28.5 0.0 1 1 1.1e-10 1.3e-08 28.3 0.0 8 77 7 83 4 83 0.89 # 49411 # 49662 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 1_5 - 1280 DUF258 PF03193.11 161 0.00025 13.4 0.0 1 1 4.4e-06 0.00051 12.4 0.0 17 58 215 258 205 273 0.83 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_23 - 618 TraG-D_C PF12696.2 128 5.5e-24 77.6 0.0 1 1 1.2e-25 1.4e-23 76.3 0.0 1 127 414 536 414 537 0.87 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_51 - 302 AAA_31 PF13614.1 157 1e-08 28.4 0.0 1 2 1.3e-07 1.6e-05 18.0 0.0 9 50 22 64 20 88 0.93 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_51 - 302 AAA_31 PF13614.1 157 1e-08 28.4 0.0 2 2 0.00016 0.018 8.1 0.0 116 155 153 193 129 195 0.78 # 55550 # 56455 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.336 1_55 - 246 Methyltransf_26 PF13659.1 117 1.2e-06 21.7 0.0 1 1 1.8e-08 2.1e-06 20.9 0.0 3 75 39 104 37 219 0.80 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_44 - 341 2-Hacid_dh_C PF02826.14 178 7e-06 18.4 0.1 1 1 1e-07 1.2e-05 17.7 0.1 32 70 17 56 3 77 0.83 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_55 - 246 FmrO PF07091.6 251 0.00015 14.0 0.0 1 1 2.9e-06 0.00034 12.8 0.0 106 149 37 79 31 117 0.82 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 1946 AAA_30 PF13604.1 196 4.8e-55 179.3 2.3 1 2 6.3e-11 7.3e-09 28.6 0.0 42 127 462 564 428 587 0.86 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 AAA_30 PF13604.1 196 4.8e-55 179.3 2.3 2 2 1.7e-47 2e-45 147.9 1.8 2 188 1013 1200 1012 1206 0.96 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_44 - 341 ApbA PF02558.11 151 0.00022 13.8 0.0 1 1 2.9e-06 0.00034 13.2 0.0 1 37 24 62 24 118 0.74 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_34 - 850 FtsK_SpoIIIE PF01580.13 205 4.4e-06 19.4 0.0 1 1 1.7e-07 9.7e-06 18.3 0.0 37 80 478 517 453 526 0.84 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_23 - 618 FtsK_SpoIIIE PF01580.13 205 0.00019 14.1 0.0 1 1 7.9e-06 0.00046 12.8 0.0 36 59 180 203 152 215 0.83 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_55 - 246 MTS PF05175.9 170 6.6e-06 18.7 0.0 1 1 1.9e-07 1.1e-05 18.0 0.0 21 77 26 81 10 103 0.81 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_45 - 84 MTS PF05175.9 170 0.00083 11.9 0.0 1 1 1.7e-05 0.001 11.6 0.0 21 53 27 59 19 70 0.88 # 49411 # 49662 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.298 3_2 - 1207 DNA_mis_repair PF01119.14 119 0.00067 12.3 0.4 1 1 1.5e-05 0.0018 10.9 0.4 57 112 82 136 77 143 0.83 # 247 # 3867 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_36 - 489 Cons_hypoth95 PF03602.10 183 0.00065 12.2 2.7 1 1 1.1e-05 0.0012 11.3 2.7 75 164 112 195 79 202 0.81 # 42086 # 43552 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.440 1_44 - 341 UDPG_MGDP_dh_N PF03721.9 185 0.00013 14.5 0.1 1 1 1.8e-06 0.00021 13.8 0.1 2 50 23 71 22 98 0.81 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_22 - 1946 AAA_19 PF13245.1 76 3.8e-08 26.2 0.1 1 1 8.8e-10 1e-07 24.8 0.1 6 76 1026 1093 1022 1093 0.76 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_34 - 850 AAA_10 PF12846.2 304 9.1e-54 176.0 0.1 1 1 2.7e-55 1.6e-53 175.2 0.1 1 290 479 754 479 758 0.92 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_23 - 618 AAA_10 PF12846.2 304 4.1e-16 52.3 0.0 1 1 1.2e-17 7.3e-16 51.5 0.0 3 299 184 492 183 496 0.84 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 341 ThiF PF00899.16 136 6.9e-44 142.1 1.4 1 1 9.4e-46 1.1e-43 141.5 1.0 2 126 21 145 20 153 0.97 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_55 - 246 Methyltransf_31 PF13847.1 152 9.3e-13 41.2 0.0 1 1 9.3e-15 1.1e-12 40.9 0.0 2 112 35 138 34 219 0.84 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_22 - 1946 Viral_helicase1 PF01443.13 234 3.6e-06 19.7 1.4 1 2 0.084 4.9 -0.3 0.0 60 85 528 553 508 609 0.82 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 Viral_helicase1 PF01443.13 234 3.6e-06 19.7 1.4 2 2 5.6e-07 3.3e-05 16.6 0.1 1 105 1032 1149 1032 1174 0.71 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 1280 Viral_helicase1 PF01443.13 234 0.00015 14.5 0.0 1 1 5e-06 0.00029 13.5 0.0 5 78 242 312 240 323 0.80 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_22 - 1946 DUF2075 PF09848.4 352 5e-06 18.8 6.7 1 2 6.9e-05 0.0081 8.2 0.7 77 132 524 571 397 588 0.71 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_22 - 1946 DUF2075 PF09848.4 352 5e-06 18.8 6.7 2 2 4.2e-06 0.00049 12.2 0.7 2 118 1030 1133 1029 1247 0.57 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_23 - 618 DUF815 PF05673.8 250 0.00017 13.7 0.0 1 1 2.4e-06 0.00028 13.0 0.0 33 85 162 214 129 220 0.69 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_23 - 618 TrwB_AAD_bind PF10412.4 386 2.2e-149 490.4 0.0 1 1 4.6e-151 2.7e-149 490.0 0.0 2 385 169 555 168 556 0.99 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_34 - 850 TrwB_AAD_bind PF10412.4 386 9.5e-05 14.2 0.0 1 1 2.8e-06 0.00016 13.4 0.0 16 56 480 520 477 544 0.90 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_23 - 618 T4SS-DNA_transf PF02534.9 469 5e-20 64.5 0.0 1 1 3.4e-21 3.9e-19 61.6 0.0 190 440 299 551 233 574 0.78 # 26775 # 28628 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_55 - 246 TIGR00755 TIGR00755 256 0.00011 14.4 0.0 1 1 2e-06 0.00023 13.3 0.0 24 86 31 91 23 108 0.79 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 246 Methyltransf_23 PF13489.1 161 3.3e-09 29.8 0.0 1 2 7.4e-11 8.7e-09 28.4 0.0 15 120 31 141 18 193 0.71 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_55 - 246 Methyltransf_23 PF13489.1 161 3.3e-09 29.8 0.0 2 2 0.073 8.5 -0.8 0.0 44 67 174 209 159 221 0.59 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 1_44 - 341 TrkA_N PF02254.13 116 6.9e-05 16.0 0.0 1 1 1.6e-06 0.00018 14.6 0.0 1 39 24 63 24 89 0.81 # 48384 # 49406 # -1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.333 1_22 - 1946 NACHT PF05729.7 166 0.00053 12.8 0.1 1 1 6.2e-05 0.0036 10.1 0.0 3 66 1032 1101 1030 1120 0.76 # 20923 # 26760 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.394 1_5 - 1280 NACHT PF05729.7 166 0.00078 12.2 0.0 1 1 7e-05 0.0041 9.9 0.0 5 61 240 293 237 317 0.80 # 4088 # 7927 # 1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.366 1_34 - 850 AAA_25 PF13481.1 194 0.0012 11.4 0.0 1 1 5.1e-05 0.006 9.1 0.0 34 83 480 519 469 559 0.69 # 39288 # 41837 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.410 1_55 - 246 Methyltransf_15 PF09445.5 164 0.00031 13.5 0.1 1 1 4.1e-06 0.00047 12.8 0.1 3 57 39 88 37 124 0.82 # 59750 # 60487 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.370 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5c2cd26e-cf89-4e0e-aac3-8bf89184516a # Target file: checkm_output/bins/pGCA_002113845.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002113845.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5c2cd26e-cf89-4e0e-aac3-8bf89184516a checkm_output/bins/pGCA_002113845.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:29 2020 # [ok]