# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_42 - 219 Methyltransf_32 PF13679.1 141 0.00034 13.0 0.0 1 1 5.8e-06 0.0005 12.5 0.0 28 73 41 80 27 99 0.90 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 Methyltransf_12 PF08242.7 99 2.4e-15 49.6 0.0 1 1 4.2e-17 3.6e-15 49.0 0.0 1 99 43 133 43 133 0.93 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 RrnaAD PF00398.15 262 6.4e-05 14.7 0.0 1 1 9.7e-07 8.3e-05 14.4 0.0 31 87 39 95 21 123 0.83 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_25 - 257 MipZ PF09140.6 261 6.9e-10 31.1 0.1 1 2 2e-09 1.7e-07 23.2 0.0 3 40 121 158 119 175 0.92 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_25 - 257 MipZ PF09140.6 261 6.9e-10 31.1 0.1 2 2 0.00036 0.031 6.0 0.0 82 108 227 253 206 256 0.83 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_25 - 257 YhjQ PF06564.7 244 2.1e-06 19.9 0.0 1 1 4.4e-08 3.7e-06 19.1 0.0 10 125 127 251 120 256 0.66 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_42 - 219 Methyltransf_18 PF12847.2 112 3.2e-14 46.2 0.0 1 1 5.5e-16 4.8e-14 45.7 0.0 4 109 41 135 39 138 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 MetW PF07021.7 193 0.00021 13.4 0.0 1 1 3.4e-06 0.00029 12.9 0.0 15 52 40 76 26 92 0.81 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 AAA_22 PF13401.1 131 3.2e-05 16.8 0.0 1 1 6.4e-07 5.5e-05 16.0 0.0 5 29 13 37 9 109 0.61 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_42 - 219 Methyltransf_PK PF05891.7 218 7.3e-06 18.1 0.0 1 1 1.4e-07 1.2e-05 17.3 0.0 54 159 37 135 25 142 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 Methyltransf_11 PF08241.7 95 5e-14 45.3 0.0 1 1 9.2e-16 7.9e-14 44.7 0.0 1 95 43 135 43 135 0.92 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 AAA_17 PF13207.1 121 0.0002 14.9 0.2 1 1 7.2e-06 0.00062 13.3 0.2 2 17 15 30 14 31 0.92 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_25 - 257 MobB PF03205.9 140 0.00065 12.1 0.0 1 2 8.8e-05 0.0076 8.7 0.0 10 44 129 161 119 165 0.80 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_25 - 257 MobB PF03205.9 140 0.00065 12.1 0.0 2 2 0.021 1.8 0.9 0.0 77 99 227 251 202 255 0.84 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_42 - 219 ADH_zinc_N PF00107.21 130 0.0001 14.6 0.1 1 1 2.9e-06 0.00025 13.3 0.1 3 92 46 140 45 166 0.74 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_23 - 476 AAA_4 PF04326.9 122 9.2e-08 25.0 0.0 1 1 1.9e-09 1.6e-07 24.2 0.0 3 121 34 188 32 189 0.80 # 20462 # 21889 # -1 # ID=1_23;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.660 1_25 - 257 ArsA_ATPase PF02374.10 305 2.1e-11 36.0 0.1 1 1 4.6e-12 3.9e-10 31.9 0.1 2 49 120 167 119 255 0.66 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_36 - 319 PhoH PF02562.11 205 0.00027 12.9 0.0 1 1 4.6e-06 0.00039 12.4 0.0 17 86 10 82 3 108 0.70 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_25 - 257 AdoHcyase_NAD PF00670.16 162 0.00098 11.7 0.1 1 1 1.7e-05 0.0014 11.1 0.1 32 76 128 176 118 194 0.75 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_25 - 257 AAA_26 PF13500.1 199 0.00049 12.4 0.1 1 1 1.5e-05 0.0013 11.1 0.1 5 32 123 150 120 154 0.82 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_25 - 257 Methyltransf_24 PF13578.1 106 6.1e-05 16.6 0.0 1 1 8e-06 0.00035 14.1 0.0 11 80 136 254 129 256 0.60 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_42 - 219 Methyltransf_24 PF13578.1 106 0.00015 15.3 0.2 1 1 1.3e-05 0.00054 13.5 0.2 3 103 45 135 2 135 0.80 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_25 - 257 Fer4_NifH PF00142.13 273 7.8e-07 21.2 0.0 1 1 1.3e-08 1.1e-06 20.7 0.0 3 43 122 162 120 183 0.88 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_36 - 319 AAA_16 PF13191.1 185 2.7e-05 16.9 0.0 1 1 5.6e-07 4.8e-05 16.1 0.0 24 165 12 179 7 194 0.57 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_25 - 257 CbiA PF01656.18 195 2.8e-24 78.3 0.0 1 1 4.8e-26 4.1e-24 77.7 0.0 1 104 121 253 121 255 0.82 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_42 - 219 Methyltransf_25 PF13649.1 101 9.8e-13 41.1 0.0 1 1 1.8e-14 1.6e-12 40.4 0.0 1 101 42 131 42 131 0.87 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 KaiC PF06745.8 227 0.00039 12.3 0.0 1 1 6.2e-06 0.00054 11.8 0.0 15 94 8 88 1 108 0.75 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 AAA_29 PF13555.1 62 0.00021 13.5 0.0 1 1 6.5e-06 0.00056 12.2 0.0 23 39 12 28 4 30 0.82 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 AAA PF00004.24 132 0.00081 12.3 0.8 1 2 0.0006 0.052 6.5 0.1 1 16 15 30 15 36 0.91 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 AAA PF00004.24 132 0.00081 12.3 0.8 2 2 0.0024 0.21 4.5 0.0 60 124 36 97 30 105 0.78 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_42 - 219 Ubie_methyltran PF01209.13 233 2.7e-06 19.3 0.0 1 1 4.3e-08 3.7e-06 18.9 0.0 44 159 35 143 21 150 0.82 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 PCMT PF01135.14 210 1.8e-08 26.8 0.0 1 1 2.9e-10 2.5e-08 26.4 0.0 75 171 40 135 22 147 0.81 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 DUF938 PF06080.7 204 5.1e-05 15.5 0.0 1 1 2.8e-06 0.00024 13.4 0.0 19 145 32 141 22 151 0.76 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 DUF258 PF03193.11 161 0.0004 12.3 0.0 1 1 7.6e-06 0.00065 11.6 0.0 34 67 11 44 6 65 0.81 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_25 - 257 AAA_31 PF13614.1 157 5.6e-10 32.1 0.0 1 1 2e-11 1.7e-09 30.5 0.0 8 128 126 254 120 256 0.84 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 1_36 - 319 AAA_33 PF13671.1 143 1.4e-20 66.3 0.1 1 1 2.4e-22 2.1e-20 65.8 0.1 1 136 14 137 14 146 0.87 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 KTI12 PF08433.5 270 1.9e-06 19.9 0.0 1 1 4.7e-08 4e-06 18.8 0.0 3 127 14 131 9 165 0.88 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_42 - 219 Methyltransf_26 PF13659.1 117 2e-11 36.6 3.2 1 2 0.019 1.6 1.5 0.0 33 64 6 37 4 42 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 Methyltransf_26 PF13659.1 117 2e-11 36.6 3.2 2 2 1e-12 8.7e-11 34.6 1.3 5 114 43 136 40 137 0.87 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 MTS PF05175.9 170 8.6e-10 30.9 0.0 1 1 2.1e-11 1.8e-09 29.9 0.0 23 140 31 137 28 153 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 6PF2K PF01591.13 223 6e-05 14.9 0.1 1 2 0.093 8 -1.9 0.0 14 30 13 29 8 31 0.84 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 6PF2K PF01591.13 223 6e-05 14.9 0.1 2 2 1.9e-06 0.00017 13.4 0.0 100 129 78 107 67 120 0.87 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 ABC_tran PF00005.22 137 0.0001 15.3 0.0 1 1 3.6e-06 0.00031 13.7 0.0 9 29 10 30 8 34 0.88 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 AAA_19 PF13245.1 76 0.00029 13.3 0.7 1 1 1e-05 0.00089 11.7 0.0 9 26 11 28 6 31 0.86 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_42 - 219 Methyltransf_2 PF00891.13 242 2.3e-07 22.9 0.1 1 1 3.9e-09 3.3e-07 22.4 0.1 101 213 38 150 33 169 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_54 - 772 AAA_10 PF12846.2 304 2.3e-08 26.4 1.5 1 2 0.00058 0.05 5.6 0.5 7 39 378 410 375 414 0.83 # 41662 # 43977 # -1 # ID=1_54;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.709 1_54 - 772 AAA_10 PF12846.2 304 2.3e-08 26.4 1.5 2 2 3.7e-08 3.2e-06 19.4 0.0 201 275 434 524 425 549 0.70 # 41662 # 43977 # -1 # ID=1_54;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.709 1_42 - 219 NodS PF05401.6 201 4.7e-05 15.5 0.0 1 1 7.4e-07 6.4e-05 15.1 0.0 36 143 31 134 5 142 0.85 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 Methyltransf_31 PF13847.1 152 7.9e-16 50.7 0.0 1 1 1.1e-17 9.9e-16 50.4 0.0 6 110 41 137 37 181 0.89 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 PrmA PF06325.8 295 2.9e-06 19.2 0.0 1 1 4.6e-08 3.9e-06 18.8 0.0 155 264 32 142 28 154 0.79 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_84 - 207 T4SS-DNA_transf PF02534.9 469 0.0011 10.2 0.0 1 1 1.5e-05 0.0013 10.0 0.0 72 103 21 53 17 101 0.80 # 71558 # 72178 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.641 1_42 - 219 TIGR00755 TIGR00755 256 6.5e-06 17.9 0.0 1 1 1e-07 8.7e-06 17.5 0.0 29 86 38 95 22 109 0.88 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_42 - 219 Methyltransf_23 PF13489.1 161 4.6e-15 48.4 0.0 1 1 7.4e-17 6.4e-15 47.9 0.0 11 116 29 138 12 170 0.73 # 35590 # 36246 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.662 1_36 - 319 UPF0079 PF02367.12 123 0.00077 11.8 0.0 1 1 1.4e-05 0.0012 11.2 0.0 12 34 9 31 1 48 0.86 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_20 - 1151 tRNA_anti-codon PF01336.20 75 2.4e-06 20.1 0.0 1 1 7.3e-08 6.2e-06 18.8 0.0 10 60 1007 1061 998 1072 0.83 # 14956 # 18408 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.731 1_36 - 319 AAA_24 PF13479.1 213 5.6e-05 15.5 0.0 1 1 9.4e-07 8.1e-05 14.9 0.0 5 33 14 42 10 56 0.83 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 NACHT PF05729.7 166 0.00015 14.2 0.3 1 3 2.7e-05 0.0023 10.3 0.0 2 18 14 30 13 32 0.91 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 NACHT PF05729.7 166 0.00015 14.2 0.3 2 3 0.026 2.2 0.6 0.0 83 131 36 90 31 120 0.63 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 NACHT PF05729.7 166 0.00015 14.2 0.3 3 3 0.066 5.7 -0.8 0.0 53 96 129 192 115 201 0.61 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_36 - 319 AAA_25 PF13481.1 194 5.8e-05 15.2 0.4 1 1 4.5e-06 0.00019 13.5 0.4 29 53 8 32 2 106 0.85 # 29692 # 30648 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.704 1_25 - 257 AAA_25 PF13481.1 194 0.00021 13.4 0.2 1 1 9.5e-06 0.00041 12.5 0.2 41 150 127 251 95 252 0.70 # 22776 # 23546 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.633 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d4a57c25-2636-4c7c-a52f-a09b6e811778 # Target file: checkm_output/bins/pGCA_002094995.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002094995.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d4a57c25-2636-4c7c-a52f-a09b6e811778 checkm_output/bins/pGCA_002094995.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:23 2020 # [ok]