# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_112 - 1149 IstB_IS21 PF01695.12 178 2.2e-05 17.2 0.1 1 1 3.8e-07 5e-05 16.1 0.1 51 93 277 319 258 329 0.89 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_3 - 387 MipZ PF09140.6 261 3.9e-14 45.6 0.0 1 2 7.8e-11 1e-08 27.8 0.0 2 48 119 164 118 179 0.89 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 MipZ PF09140.6 261 3.9e-14 45.6 0.0 2 2 4.7e-07 6.1e-05 15.4 0.0 73 121 218 266 204 269 0.77 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 YhjQ PF06564.7 244 3.5e-08 26.3 0.1 1 2 3.8e-08 4.9e-06 19.3 0.0 10 126 126 252 119 269 0.63 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 YhjQ PF06564.7 244 3.5e-08 26.3 0.1 2 2 0.0052 0.69 2.5 0.0 206 233 355 382 333 385 0.82 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_38 - 277 UvrD_C_2 PF13538.1 104 4.6e-08 26.5 0.1 1 1 1.3e-09 8.5e-08 25.6 0.1 3 103 55 168 53 169 0.76 # 33881 # 34711 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.729 1_8 - 1375 UvrD_C_2 PF13538.1 104 0.0007 13.1 0.0 1 1 3.8e-05 0.0025 11.3 0.0 4 100 839 949 836 953 0.69 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_27 - 519 DUF87 PF01935.12 229 0.0014 11.8 0.0 1 1 1.7e-05 0.0022 11.1 0.0 28 130 136 257 130 311 0.69 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_60 - 351 NmrA PF05368.8 233 2.8e-05 16.7 0.4 1 1 4.3e-07 5.6e-05 15.7 0.2 1 101 17 136 17 157 0.77 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_8 - 1375 AAA_22 PF13401.1 131 6e-05 16.5 0.3 1 1 0.00012 0.0053 10.2 0.3 6 127 594 702 586 705 0.64 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_84 - 1292 AAA_22 PF13401.1 131 0.00013 15.5 0.1 1 1 3.8e-05 0.0017 11.8 0.0 8 37 316 357 312 409 0.69 # 78777 # 82652 # 1 # ID=1_84;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_7 - 89 AAA_22 PF13401.1 131 0.0006 13.3 0.0 1 1 1.7e-05 0.00076 12.9 0.0 3 29 52 78 47 87 0.83 # 5902 # 6168 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.745 1_3 - 387 ATP_bind_1 PF03029.12 238 0.00022 14.1 0.0 1 2 0.00025 0.032 7.0 0.0 6 34 128 156 126 162 0.95 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 ATP_bind_1 PF03029.12 238 0.00022 14.1 0.0 2 2 0.0014 0.18 4.5 0.0 77 99 231 252 211 255 0.71 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_60 - 351 DFP PF04127.10 185 4.1e-05 16.5 1.7 1 2 8.7e-07 0.00011 15.1 1.1 29 99 24 102 17 108 0.70 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_60 - 351 DFP PF04127.10 185 4.1e-05 16.5 1.7 2 2 0.079 10 -1.1 0.0 63 92 110 141 99 170 0.74 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_27 - 519 AAA_17 PF13207.1 121 6.1e-05 17.2 0.2 1 1 1.2e-06 0.00015 15.9 0.1 2 28 134 163 133 222 0.81 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_3 - 387 ArsA_ATPase PF02374.10 305 1e-08 27.8 0.2 1 1 1.6e-09 2.1e-07 23.5 0.2 2 51 119 168 118 261 0.69 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_27 - 519 T2SE PF00437.15 272 0.00054 12.2 0.0 1 1 1.1e-05 0.0014 10.8 0.0 112 162 115 165 106 175 0.77 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_3 - 387 VirC1 PF07015.6 231 0.00029 13.2 0.1 1 2 7.6e-06 0.001 11.5 0.0 4 45 120 161 117 166 0.90 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 VirC1 PF07015.6 231 0.00029 13.2 0.1 2 2 0.083 11 -1.7 0.0 70 90 231 250 207 252 0.69 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 Fer4_NifH PF00142.13 273 1.4e-07 24.3 0.1 1 2 5.1e-08 6.7e-06 18.7 0.0 5 46 123 164 119 180 0.88 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 Fer4_NifH PF00142.13 273 1.4e-07 24.3 0.1 2 2 0.0038 0.5 2.7 0.0 201 246 340 385 309 386 0.73 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_84 - 1292 AAA_16 PF13191.1 185 3.8e-08 26.8 0.2 1 2 8.8e-10 3.8e-08 26.8 0.2 2 142 291 456 290 471 0.73 # 78777 # 82652 # 1 # ID=1_84;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_84 - 1292 AAA_16 PF13191.1 185 3.8e-08 26.8 0.2 2 2 0.023 0.99 2.6 0.1 65 133 770 852 732 874 0.67 # 78777 # 82652 # 1 # ID=1_84;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.737 1_112 - 1149 AAA_16 PF13191.1 185 3.1e-06 20.5 0.8 1 1 7.2e-08 3.1e-06 20.5 0.8 2 63 254 312 253 398 0.61 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_27 - 519 AAA_16 PF13191.1 185 0.00066 13.0 1.8 1 1 6.5e-05 0.0028 10.9 1.4 25 48 132 155 121 385 0.90 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_27 - 519 AAA_18 PF13238.1 129 1.9e-05 18.3 0.1 1 1 3.5e-07 4.6e-05 17.0 0.1 1 23 134 166 134 181 0.80 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_60 - 351 adh_short PF00106.20 167 2e-11 37.4 5.4 1 1 3e-13 4e-11 36.4 5.4 2 137 16 140 15 145 0.82 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_3 - 387 CbiA PF01656.18 195 3.5e-30 98.1 0.0 1 1 1e-31 6.8e-30 97.2 0.0 1 162 120 325 120 359 0.74 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_112 - 1149 CbiA PF01656.18 195 0.00031 13.4 0.1 1 1 2.2e-05 0.0015 11.3 0.0 6 31 280 305 277 306 0.93 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_60 - 351 Polysacc_synt_2 PF02719.10 294 2.7e-19 62.4 0.1 1 1 5.4e-21 7.1e-19 61.0 0.1 1 128 17 138 17 143 0.82 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_8 - 1375 AAA_29 PF13555.1 62 8.8e-05 15.3 0.2 1 1 5e-06 0.00022 14.1 0.2 27 43 596 612 587 623 0.88 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_27 - 519 AAA_29 PF13555.1 62 0.00024 13.9 0.0 1 1 1.4e-05 0.0006 12.7 0.0 24 49 132 157 126 165 0.85 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_7 - 89 AAA_29 PF13555.1 62 0.0012 11.7 0.0 1 1 4.1e-05 0.0018 11.1 0.0 20 39 50 69 43 75 0.86 # 5902 # 6168 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.745 1_60 - 351 KR PF08659.5 181 3.5e-08 26.6 1.0 1 1 6.3e-10 8.2e-08 25.4 1.0 2 138 16 140 15 150 0.78 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_7 - 89 DUF258 PF03193.11 161 0.00022 13.7 0.0 1 1 2e-06 0.00026 13.5 0.0 33 59 51 77 35 84 0.82 # 5902 # 6168 # -1 # ID=1_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.745 1_26 - 561 TraG-D_C PF12696.2 128 3.8e-23 75.1 0.0 1 1 4.5e-25 5.8e-23 74.5 0.0 2 127 403 519 402 520 0.88 # 21379 # 23061 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.700 1_3 - 387 AAA_31 PF13614.1 157 1.2e-10 34.8 0.0 1 2 3.4e-08 4.5e-06 20.0 0.0 2 46 119 163 118 209 0.88 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 AAA_31 PF13614.1 157 1.2e-10 34.8 0.0 2 2 9e-06 0.0012 12.1 0.0 105 134 231 260 222 292 0.89 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_60 - 351 2-Hacid_dh_C PF02826.14 178 0.0013 11.1 0.7 1 1 2.3e-05 0.003 10.0 0.7 31 70 9 49 3 98 0.80 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_8 - 1375 AAA_30 PF13604.1 196 1.6e-48 158.1 9.7 1 2 0.021 2.7 0.7 0.2 39 80 132 173 86 195 0.85 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_8 - 1375 AAA_30 PF13604.1 196 1.6e-48 158.1 9.7 2 2 1.2e-50 1.6e-48 158.1 9.7 2 195 576 763 575 764 0.98 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_60 - 351 ApbA PF02558.11 151 0.0003 13.5 0.1 1 1 4.7e-06 0.00061 12.5 0.1 5 74 22 92 17 120 0.81 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_27 - 519 FtsK_SpoIIIE PF01580.13 205 1e-05 18.4 0.2 1 2 3.2e-07 4.2e-05 16.4 0.0 37 63 130 156 110 177 0.84 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_27 - 519 FtsK_SpoIIIE PF01580.13 205 1e-05 18.4 0.2 2 2 0.07 9.2 -1.1 0.0 179 204 397 422 285 423 0.73 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_124 - 291 DNA_mis_repair PF01119.14 119 0.00024 13.9 0.0 1 1 2.9e-06 0.00037 13.2 0.0 8 63 205 262 199 271 0.79 # 121164 # 122036 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.726 1_60 - 351 NAD_binding_4 PF07993.7 249 8.7e-14 44.3 2.9 1 1 1.7e-15 2.2e-13 42.9 2.9 60 248 64 247 19 248 0.74 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_27 - 519 AAA_19 PF13245.1 76 2.7e-07 23.6 0.3 1 2 0.0015 0.2 4.8 0.1 41 69 25 54 10 74 0.76 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_27 - 519 AAA_19 PF13245.1 76 2.7e-07 23.6 0.3 2 2 6.3e-07 8.3e-05 15.6 0.0 10 49 131 166 124 178 0.85 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_60 - 351 RmlD_sub_bind PF04321.12 287 1.3e-24 79.8 2.2 1 1 1.3e-26 1.7e-24 79.5 2.2 2 231 16 283 15 329 0.86 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_60 - 351 NAD_binding_10 PF13460.1 183 2.9e-18 59.8 2.7 1 1 3.7e-20 4.8e-18 59.1 2.7 1 179 17 250 17 254 0.76 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_27 - 519 AAA_10 PF12846.2 304 2.1e-59 194.7 0.0 1 1 3.9e-61 2.5e-59 194.4 0.0 1 303 131 469 131 470 0.94 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_3 - 387 AAA_10 PF12846.2 304 5e-05 16.1 0.0 1 1 1.2e-06 8.2e-05 15.4 0.0 11 144 128 305 126 345 0.72 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_60 - 351 3Beta_HSD PF01073.14 280 4.2e-26 84.5 0.0 1 1 4.1e-28 5.3e-26 84.2 0.0 1 257 18 288 18 305 0.78 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_105 - 449 DUF3584 PF12128.3 1201 0.00041 11.0 17.8 1 1 3.9e-06 0.00052 10.7 17.8 609 744 126 267 94 289 0.79 # 98551 # 99897 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.711 1_8 - 1375 Viral_helicase1 PF01443.13 234 1.5e-05 17.9 0.2 1 2 2.1e-06 0.00028 13.7 0.1 3 100 597 702 596 709 0.71 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_8 - 1375 Viral_helicase1 PF01443.13 234 1.5e-05 17.9 0.2 2 2 0.011 1.4 1.6 0.0 184 231 912 951 879 953 0.80 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_60 - 351 Epimerase PF01370.16 236 2e-48 158.1 0.7 1 1 1.9e-50 2.5e-48 157.8 0.7 1 236 17 265 17 265 0.89 # 56314 # 57366 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.714 1_26 - 561 TrwB_AAD_bind PF10412.4 386 5.4e-21 67.9 0.0 1 1 1.3e-22 8.3e-21 67.2 0.0 75 375 217 528 213 538 0.82 # 21379 # 23061 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.700 1_27 - 519 TrwB_AAD_bind PF10412.4 386 0.00013 14.0 0.0 1 1 5.6e-06 0.00037 12.4 0.0 17 57 133 174 126 200 0.84 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_8 - 1375 AAA_11 PF13086.1 236 1.3e-05 18.2 0.0 1 1 5e-07 6.5e-05 15.8 0.1 192 232 662 705 625 707 0.78 # 6462 # 10586 # 1 # ID=1_8;partial=00;start_type=GTG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.734 1_26 - 561 T4SS-DNA_transf PF02534.9 469 5.4e-32 104.2 0.0 1 1 1.2e-33 1.6e-31 102.6 0.0 47 463 155 557 125 560 0.82 # 21379 # 23061 # -1 # ID=1_26;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.700 1_3 - 387 ArgK PF03308.11 267 3.1e-05 16.1 0.0 1 1 8.6e-07 5.6e-05 15.3 0.0 30 72 119 161 110 174 0.80 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_27 - 519 ArgK PF03308.11 267 8.1e-05 14.7 0.0 1 1 2.5e-06 0.00016 13.7 0.0 32 60 134 162 125 172 0.88 # 23063 # 24619 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.719 1_112 - 1149 NACHT PF05729.7 166 0.00076 12.4 1.0 1 2 2.5e-05 0.0033 10.4 0.3 4 26 277 299 275 304 0.89 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_112 - 1149 NACHT PF05729.7 166 0.00076 12.4 1.0 2 2 0.077 10 -1.0 0.0 14 67 658 709 592 722 0.63 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_38 - 277 Herpes_Helicase PF02689.9 819 3.1e-06 18.4 0.0 1 1 3.1e-08 4.1e-06 18.0 0.0 741 794 127 177 118 186 0.86 # 33881 # 34711 # -1 # ID=1_38;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.729 1_112 - 1149 AAA_5 PF07728.9 139 4.8e-05 16.4 0.0 1 1 1.3e-06 0.00016 14.7 0.0 3 32 277 306 275 321 0.90 # 105304 # 108750 # -1 # ID=1_112;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.723 1_3 - 387 APS_kinase PF01583.15 157 3.8e-06 19.9 0.1 1 2 7.2e-05 0.0095 8.9 0.0 11 50 127 165 119 175 0.82 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_3 - 387 APS_kinase PF01583.15 157 3.8e-06 19.9 0.1 2 2 0.0001 0.013 8.4 0.0 91 140 235 283 216 292 0.82 # 2237 # 3397 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f15a0a2e-e005-47da-89a3-9bd0e84551e7 # Target file: checkm_output/bins/pGCA_002080455.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002080455.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f15a0a2e-e005-47da-89a3-9bd0e84551e7 checkm_output/bins/pGCA_002080455.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:22 2020 # [ok]