# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_21 - 270 Methyltransf_32 PF13679.1 141 0.00023 13.3 0.0 1 2 0.0028 0.21 3.8 0.0 32 77 11 56 4 97 0.84 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 Methyltransf_32 PF13679.1 141 0.00023 13.3 0.0 2 2 0.00022 0.017 7.3 0.0 23 50 169 195 158 224 0.79 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 cobW PF02492.14 178 0.00044 12.2 0.3 1 1 3.3e-05 0.0024 9.8 0.3 2 121 38 170 37 205 0.61 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_18 - 223 Saccharop_dh PF03435.13 386 0.00033 12.1 0.0 1 1 6.9e-06 0.00051 11.5 0.0 1 43 10 50 10 87 0.84 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 ABC_ATPase PF09818.4 448 5.6e-05 14.3 1.6 1 2 5.1e-05 0.0038 8.3 0.0 240 264 31 56 11 61 0.89 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 ABC_ATPase PF09818.4 448 5.6e-05 14.3 1.6 2 2 0.00082 0.061 4.3 0.4 322 413 156 232 141 257 0.68 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 IstB_IS21 PF01695.12 178 0.00034 12.6 0.0 1 1 1.1e-05 0.00082 11.3 0.0 44 67 33 56 23 61 0.90 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_21 - 270 MipZ PF09140.6 261 2.8e-12 38.7 0.0 1 1 5.8e-12 4.3e-10 31.5 0.0 3 132 4 155 2 177 0.66 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 YhjQ PF06564.7 244 3.9e-12 38.4 0.0 1 1 8e-14 5.9e-12 37.9 0.0 1 150 1 154 1 200 0.78 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 6_1 - 313 3HCDH_N PF02737.13 180 5e-05 15.5 0.1 1 1 3.4e-06 0.00012 14.2 0.1 1 40 2 41 2 64 0.87 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 3HCDH_N PF02737.13 180 0.00012 14.3 0.0 1 1 5e-06 0.00019 13.6 0.0 2 45 10 53 9 70 0.89 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 NB-ARC PF00931.17 287 7.2e-05 14.2 0.1 1 1 5.3e-06 0.0002 12.7 0.0 20 40 37 57 24 69 0.86 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 NB-ARC PF00931.17 287 0.00047 11.5 0.0 1 1 2e-05 0.00073 10.9 0.0 19 44 41 66 31 138 0.88 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 AAA_22 PF13401.1 131 3.5e-08 26.2 0.8 1 1 2.8e-08 1e-06 21.4 0.8 4 123 36 214 33 220 0.71 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_22 PF13401.1 131 8.7e-05 15.2 1.7 1 1 6e-05 0.0022 10.6 1.7 9 123 46 212 39 221 0.60 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_21 - 270 ATP_bind_1 PF03029.12 238 2.6e-05 16.3 0.1 1 1 2.4e-06 0.00018 13.6 0.1 6 99 12 130 10 137 0.67 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_8 - 320 PRK PF00485.13 194 5.6e-05 15.2 0.2 1 1 1.9e-06 0.00014 14.0 0.0 2 81 44 124 43 140 0.80 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_21 - 270 SRP54 PF00448.17 196 1.1e-05 17.4 0.7 1 1 4.8e-07 3.6e-05 15.7 0.1 10 40 11 41 1 46 0.84 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 AAA_15 PF13175.1 415 2.2e-09 29.2 0.1 1 2 9.2e-05 0.0034 8.9 0.0 17 56 30 70 14 132 0.75 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_15 PF13175.1 415 2.2e-09 29.2 0.1 2 2 1.1e-07 3.9e-06 18.5 0.0 361 411 172 216 154 220 0.81 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_15 PF13175.1 415 7e-06 17.7 0.6 1 2 1.1e-05 0.00042 11.9 0.9 27 99 46 132 6 141 0.83 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_8 - 320 AAA_15 PF13175.1 415 7e-06 17.7 0.6 2 2 0.0046 0.17 3.3 0.0 370 410 173 213 162 218 0.81 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_18 - 223 NAD_binding_7 PF13241.1 103 9e-06 18.4 0.1 1 1 2.6e-07 1.9e-05 17.4 0.1 6 69 6 80 3 115 0.69 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 AAA_17 PF13207.1 121 5.7e-05 16.4 0.1 1 1 4e-06 0.00015 15.1 0.1 1 20 38 57 38 82 0.90 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_17 PF13207.1 121 0.0064 9.8 3.9 1 1 0.00067 0.025 7.9 3.9 2 19 44 61 43 300 0.79 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 AAA_21 PF13304.1 303 4.9e-16 51.9 0.1 1 2 7.2e-06 0.00026 13.4 0.0 2 25 39 64 38 89 0.76 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_21 PF13304.1 303 4.9e-16 51.9 0.1 2 2 6e-13 2.2e-11 36.6 0.0 227 300 147 218 88 221 0.84 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_21 PF13304.1 303 6.4e-13 41.7 2.8 1 1 1.9e-13 7.1e-12 38.3 0.9 3 299 45 215 44 219 0.95 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 Miro PF08477.8 119 2e-05 17.6 0.2 1 1 7.4e-07 5.5e-05 16.2 0.1 3 51 40 84 39 106 0.80 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 MobB PF03205.9 140 7.6e-05 14.9 0.0 1 1 2e-06 0.00015 14.0 0.0 2 48 38 83 37 124 0.72 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_3 - 124 Ribosomal_L35p PF01632.14 61 0.0015 11.0 4.6 1 2 1.8e-05 0.0013 11.1 0.7 33 61 1 29 1 29 0.95 # 802 # 1173 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.247 2_3 - 124 Ribosomal_L35p PF01632.14 61 0.0015 11.0 4.6 2 2 0.023 1.7 1.1 0.2 29 40 84 95 80 114 0.82 # 802 # 1173 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.247 2_18 - 223 ADH_zinc_N PF00107.21 130 1.5e-05 17.1 0.1 1 2 0.0068 0.51 2.4 0.0 9 78 22 89 14 91 0.52 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 ADH_zinc_N PF00107.21 130 1.5e-05 17.1 0.1 2 2 4.5e-06 0.00033 12.7 0.0 7 47 90 130 86 140 0.85 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_21 - 270 ArsA_ATPase PF02374.10 305 1e-14 46.7 0.4 1 1 2.6e-16 1.9e-14 45.8 0.0 5 137 6 132 1 137 0.79 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 PhoH PF02562.11 205 1.8e-05 16.5 0.0 1 2 5.8e-06 0.00043 12.0 0.0 16 70 33 91 19 127 0.67 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 PhoH PF02562.11 205 1.8e-05 16.5 0.0 2 2 0.0058 0.43 2.2 0.0 92 117 297 322 258 326 0.81 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_18 - 223 Shikimate_DH PF01488.15 135 3.5e-06 19.6 0.4 1 1 1.3e-07 9.9e-06 18.2 0.1 11 76 6 70 1 106 0.79 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 F420_oxidored PF03807.12 96 6.2e-08 25.5 0.1 1 2 5.7e-08 2.1e-06 20.6 0.0 2 60 10 65 9 85 0.82 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 F420_oxidored PF03807.12 96 6.2e-08 25.5 0.1 2 2 0.018 0.68 3.0 0.0 41 69 184 211 125 222 0.86 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 6_1 - 313 F420_oxidored PF03807.12 96 6.9e-05 15.8 0.1 1 1 1.2e-05 0.00046 13.1 0.1 1 88 2 97 2 104 0.84 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 FAD_binding_3 PF01494.14 356 0.00027 12.5 0.0 1 1 6e-06 0.00044 11.8 0.0 3 39 9 45 7 71 0.86 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 SMC_N PF02463.14 220 1e-10 33.6 0.1 1 1 7.1e-12 2.6e-10 32.3 0.1 26 213 38 231 27 238 0.83 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 SMC_N PF02463.14 220 4.3e-08 25.1 0.5 1 1 2.1e-09 7.7e-08 24.3 0.5 26 213 43 229 30 235 0.76 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_21 - 270 VirC1 PF07015.6 231 1.4e-05 16.7 0.0 1 1 3.1e-07 2.3e-05 16.0 0.0 1 46 1 46 1 80 0.89 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 Fer4_NifH PF00142.13 273 4.7e-05 15.1 0.4 1 2 0.00058 0.043 5.4 0.0 8 41 10 43 3 58 0.87 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 Fer4_NifH PF00142.13 273 4.7e-05 15.1 0.4 2 2 0.00013 0.0095 7.6 0.1 183 240 194 251 182 268 0.80 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 AAA_16 PF13191.1 185 1.3e-05 17.8 0.7 1 1 2.8e-07 2.1e-05 17.1 0.7 19 45 31 57 23 245 0.92 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_23 PF13476.1 202 4.7e-05 16.2 0.1 1 1 2.7e-06 0.0001 15.1 0.1 15 40 29 57 20 95 0.80 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_7 - 137 AAA_23 PF13476.1 202 0.027 7.2 21.0 1 1 0.00091 0.034 6.9 21.0 104 202 17 118 2 127 0.56 # 5493 # 5903 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.316 3_8 - 320 AAA_18 PF13238.1 129 1.1e-05 18.2 0.5 1 1 6.6e-07 2.4e-05 17.1 0.1 1 72 44 130 44 150 0.68 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 AAA_18 PF13238.1 129 0.00023 14.0 1.7 1 2 3.3e-05 0.0012 11.6 0.1 2 19 40 57 39 90 0.78 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_18 PF13238.1 129 0.00023 14.0 1.7 2 2 0.063 2.3 1.0 0.0 43 81 179 215 103 244 0.77 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_13 PF13166.1 712 0.00018 12.5 0.1 1 2 0.0026 0.19 2.5 0.0 21 40 41 60 33 90 0.77 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_13 PF13166.1 712 0.00018 12.5 0.1 2 2 6.1e-05 0.0045 7.9 0.0 527 579 174 225 168 253 0.89 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_18 - 223 GFO_IDH_MocA PF01408.17 120 0.00018 14.6 0.0 1 1 6e-06 0.00044 13.3 0.0 2 83 9 92 8 99 0.74 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_21 - 270 CbiA PF01656.18 195 4.2e-28 90.5 0.2 1 1 2.5e-29 9.1e-28 89.4 0.2 1 178 4 214 4 254 0.75 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 CbiA PF01656.18 195 6.5e-05 14.9 1.2 1 2 0.00043 0.016 7.1 0.1 4 21 41 58 38 66 0.84 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 CbiA PF01656.18 195 6.5e-05 14.9 1.2 2 2 0.00061 0.023 6.6 0.1 111 169 169 226 154 253 0.83 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_21 - 270 AAA_14 PF13173.1 128 2.3e-06 20.0 2.3 1 1 6.4e-08 4.7e-06 19.0 0.9 12 109 12 100 6 119 0.65 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_18 - 223 HI0933_like PF03486.9 409 0.00047 11.1 0.1 1 2 1.6e-05 0.0012 9.8 0.1 2 40 9 47 8 49 0.94 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 HI0933_like PF03486.9 409 0.00047 11.1 0.1 2 2 0.06 4.4 -2.0 0.0 117 166 167 214 126 215 0.51 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 AAA_29 PF13555.1 62 1.5e-07 23.4 0.1 1 1 7.3e-09 2.7e-07 22.6 0.1 21 51 34 64 20 68 0.77 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_29 PF13555.1 62 6.1e-06 18.2 0.4 1 1 3.4e-07 1.2e-05 17.3 0.4 13 39 32 57 29 62 0.84 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 AAA PF00004.24 132 2.3e-06 20.3 0.3 1 2 2.4e-05 0.0017 11.0 0.0 3 44 41 84 39 108 0.78 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA PF00004.24 132 2.3e-06 20.3 0.3 2 2 0.00068 0.05 6.3 0.0 82 117 146 180 131 195 0.85 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 Sigma54_activat PF00158.21 168 0.00023 13.2 0.3 1 2 9.1e-05 0.0068 8.4 0.1 19 54 38 73 23 88 0.82 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_8 - 320 Sigma54_activat PF00158.21 168 0.00023 13.2 0.3 2 2 0.0047 0.35 2.8 0.0 78 118 155 198 149 230 0.83 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_8 - 320 MMR_HSR1 PF01926.18 116 2.6e-05 16.7 0.2 1 1 1.5e-06 5.6e-05 15.6 0.1 2 61 44 147 43 208 0.68 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 MMR_HSR1 PF01926.18 116 0.00078 11.9 0.6 1 1 3.6e-05 0.0013 11.2 0.6 2 21 39 58 38 247 0.89 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 DUF258 PF03193.11 161 7e-06 17.8 0.1 1 1 3.1e-07 1.2e-05 17.1 0.1 21 62 21 63 2 90 0.75 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 DUF258 PF03193.11 161 0.00014 13.6 0.2 1 1 6.9e-06 0.00025 12.7 0.2 33 65 38 71 17 93 0.80 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_18 - 223 NAD_binding_2 PF03446.10 163 2.2e-09 29.8 0.3 1 1 1e-10 3.7e-09 29.1 0.1 2 95 8 107 7 119 0.85 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 6_1 - 313 NAD_binding_2 PF03446.10 163 3.3e-06 19.5 0.5 1 1 2e-07 7.3e-06 18.4 0.1 2 62 1 61 1 100 0.82 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_21 - 270 AAA_31 PF13614.1 157 1.5e-17 56.4 0.0 1 1 8.4e-19 6.2e-17 54.4 0.0 2 151 3 154 2 159 0.86 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 AAA_33 PF13671.1 143 8.9e-05 14.9 0.0 1 1 2.2e-06 0.00017 14.0 0.0 1 22 38 59 38 166 0.71 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_21 - 270 KTI12 PF08433.5 270 7.7e-05 14.4 0.0 1 2 3.3e-06 0.00025 12.8 0.0 12 50 13 58 10 85 0.78 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 KTI12 PF08433.5 270 7.7e-05 14.4 0.0 2 2 0.084 6.2 -1.7 0.0 10 21 178 189 177 208 0.88 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 6_1 - 313 NAD_Gly3P_dh_N PF01210.18 157 2.8e-10 32.6 0.1 1 1 1.3e-11 4.7e-10 31.9 0.1 1 118 2 113 2 141 0.83 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 NAD_Gly3P_dh_N PF01210.18 157 0.00011 14.5 0.0 1 2 1.7e-05 0.00064 11.9 0.0 2 41 10 49 9 56 0.91 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 NAD_Gly3P_dh_N PF01210.18 157 0.00011 14.5 0.0 2 2 0.085 3.2 -0.0 0.0 38 76 172 210 147 221 0.71 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 2-Hacid_dh_C PF02826.14 178 1.3e-06 20.1 0.0 1 2 5.5e-08 4.1e-06 18.5 0.0 35 75 6 46 1 66 0.84 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 2-Hacid_dh_C PF02826.14 178 1.3e-06 20.1 0.0 2 2 0.089 6.6 -1.7 0.0 57 97 177 209 165 212 0.64 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 XdhC_C PF13478.1 136 3.7e-06 19.8 0.0 1 1 1.3e-07 9.8e-06 18.4 0.0 1 83 10 100 10 116 0.79 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_3 - 124 Ribosomal_S15 PF00312.17 83 0.00014 14.1 1.7 1 1 6.1e-06 0.00045 12.5 1.7 18 65 66 119 50 123 0.76 # 802 # 1173 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.247 6_1 - 313 ApbA PF02558.11 151 2.8e-42 136.2 0.2 1 1 1.2e-43 4.3e-42 135.6 0.2 1 148 3 151 3 153 0.98 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 ApbA PF02558.11 151 3.3e-07 22.3 0.0 1 2 1.2e-07 4.3e-06 18.7 0.0 1 40 10 50 10 103 0.77 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 ApbA PF02558.11 151 3.3e-07 22.3 0.0 2 2 0.023 0.85 1.5 0.0 67 99 177 209 142 211 0.87 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_14 - 63 CoA_binding_3 PF13727.1 175 0.00038 12.8 1.2 1 1 5.1e-06 0.00038 12.8 1.2 25 58 11 45 1 52 0.76 # 10841 # 11029 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.206 2_18 - 223 ELFV_dehydrog PF00208.16 244 0.0001 14.4 0.2 1 2 4e-06 0.0003 12.9 0.0 31 63 6 37 1 52 0.87 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 ELFV_dehydrog PF00208.16 244 0.0001 14.4 0.2 2 2 0.055 4.1 -0.7 0.0 187 187 152 152 61 212 0.58 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_8 - 320 ABC_tran PF00005.22 137 2.3e-35 114.3 0.1 1 1 1.1e-36 4.2e-35 113.5 0.1 2 136 32 182 31 183 0.93 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_9 - 339 ABC_tran PF00005.22 137 1.1e-32 105.7 0.1 1 1 6.5e-34 2.4e-32 104.6 0.0 3 136 28 184 26 185 0.93 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 6_1 - 313 UDPG_MGDP_dh_N PF03721.9 185 4e-07 22.1 0.1 1 1 1.7e-08 6.2e-07 21.4 0.1 1 100 1 94 1 115 0.79 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 UDPG_MGDP_dh_N PF03721.9 185 5.7e-06 18.3 0.1 1 1 3.6e-07 1.3e-05 17.1 0.1 2 57 9 66 8 80 0.87 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 AAA_10 PF12846.2 304 1e-06 20.8 0.2 1 2 1.8e-05 0.00067 11.6 0.1 4 21 39 56 37 71 0.85 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_10 PF12846.2 304 1e-06 20.8 0.2 2 2 0.00037 0.014 7.3 0.0 216 268 170 222 131 249 0.74 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_10 PF12846.2 304 0.00014 13.8 0.5 1 2 2e-05 0.00074 11.4 0.3 6 32 46 73 42 139 0.72 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_8 - 320 AAA_10 PF12846.2 304 0.00014 13.8 0.5 2 2 0.054 2 0.2 0.0 215 265 167 217 137 235 0.79 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_18 - 223 Pyr_redox PF00070.22 80 9.9e-05 15.2 0.8 1 2 8.2e-05 0.0061 9.5 0.0 1 32 9 40 9 69 0.88 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 Pyr_redox PF00070.22 80 9.9e-05 15.2 0.8 2 2 0.007 0.52 3.3 0.0 17 65 92 145 83 158 0.70 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 3_9 - 339 Sigma54_activ_2 PF14532.1 138 0.00013 14.6 0.0 1 2 8.9e-05 0.0066 9.0 0.0 20 50 35 65 21 88 0.79 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 Sigma54_activ_2 PF14532.1 138 0.00013 14.6 0.0 2 2 0.012 0.88 2.1 0.0 73 96 289 312 269 320 0.85 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 2_3 - 124 AAA_32 PF13654.1 509 6.1e-05 14.2 3.4 1 1 9.3e-07 6.9e-05 14.1 3.4 123 239 3 116 1 122 0.86 # 802 # 1173 # 1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.247 2_18 - 223 TrkA_N PF02254.13 116 1.1e-27 88.9 0.2 1 1 1e-28 3.7e-27 87.2 0.1 1 116 10 125 10 125 0.96 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 6_1 - 313 TrkA_N PF02254.13 116 3.4e-05 16.4 0.4 1 1 2.9e-06 0.00011 14.7 0.1 1 44 3 46 3 55 0.90 # 530 # 1468 # 1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.408 2_18 - 223 IlvN PF07991.7 165 7.4e-06 17.9 0.1 1 2 4.2e-07 3.1e-05 15.9 0.0 4 46 7 49 4 69 0.91 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_18 - 223 IlvN PF07991.7 165 7.4e-06 17.9 0.1 2 2 0.048 3.5 -0.6 0.0 45 69 137 161 107 211 0.58 # 14656 # 15324 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.327 2_21 - 270 AAA_24 PF13479.1 213 2.1e-05 16.7 0.1 1 1 7.4e-07 5.5e-05 15.3 0.1 11 75 10 128 6 129 0.77 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 3_9 - 339 NACHT PF05729.7 166 0.0002 13.6 0.0 1 1 5.1e-06 0.00037 12.6 0.0 2 21 38 57 37 67 0.87 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_25 PF13481.1 194 1.2e-06 20.5 0.1 1 2 3.8e-07 1.4e-05 17.0 0.0 29 54 32 57 4 60 0.80 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_9 - 339 AAA_25 PF13481.1 194 1.2e-06 20.5 0.1 2 2 0.029 1.1 1.1 0.0 134 188 166 215 126 216 0.66 # 8672 # 9688 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.381 3_8 - 320 AAA_25 PF13481.1 194 0.00048 12.0 0.1 1 2 0.00019 0.007 8.2 0.0 30 50 38 58 30 107 0.91 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 3_8 - 320 AAA_25 PF13481.1 194 0.00048 12.0 0.1 2 2 0.024 0.88 1.4 0.0 165 188 190 213 161 214 0.80 # 7716 # 8675 # -1 # ID=3_8;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.354 2_21 - 270 APS_kinase PF01583.15 157 0.00052 12.2 0.0 1 2 4.4e-05 0.0032 9.6 0.0 10 41 10 41 2 91 0.73 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 2_21 - 270 APS_kinase PF01583.15 157 0.00052 12.2 0.0 2 2 0.054 4 -0.5 0.0 69 89 135 155 132 167 0.86 # 16527 # 17336 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.284 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ec6a9e76-7b83-4afd-a6e3-0326e9fce4bd # Target file: checkm_output/bins/pGCA_002078615.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002078615.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ec6a9e76-7b83-4afd-a6e3-0326e9fce4bd checkm_output/bins/pGCA_002078615.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:15 2020 # [ok]