# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_228 - 262 Methyltransf_12 PF08242.7 99 0.004 11.7 2.6 1 1 3.3e-05 0.0075 10.9 1.3 31 95 83 184 79 188 0.93 # 203852 # 204637 # 1 # ID=1_228;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_88 - 300 UPF0020 PF01170.13 180 0.00064 13.4 0.2 1 2 0.029 6.7 0.3 0.1 28 43 69 84 59 84 0.85 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_88 - 300 UPF0020 PF01170.13 180 0.00064 13.4 0.2 2 2 2.4e-05 0.0055 10.4 0.0 94 121 117 143 95 157 0.80 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_46 - 705 Seryl_tRNA_N PF02403.17 108 0.00027 15.0 2.6 1 1 6.5e-06 0.00075 13.6 2.6 40 102 57 120 53 124 0.91 # 80425 # 82539 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.354 1_158 - 174 Seryl_tRNA_N PF02403.17 108 0.00048 14.2 6.2 1 2 0.0059 0.68 4.1 0.2 61 97 24 60 9 65 0.81 # 163018 # 163539 # -1 # ID=1_158;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.370 1_158 - 174 Seryl_tRNA_N PF02403.17 108 0.00048 14.2 6.2 2 2 1.4e-05 0.0016 12.5 1.5 33 66 115 148 101 164 0.72 # 163018 # 163539 # -1 # ID=1_158;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.370 1_2 - 596 Terminase_6 PF03237.10 384 9.8e-10 31.7 1.8 1 1 6.7e-12 1.5e-09 31.1 1.8 4 306 70 401 68 419 0.78 # 271 # 2058 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.380 1_87 - 210 IstB_IS21 PF01695.12 178 0.0013 12.3 0.0 1 1 9.9e-06 0.0023 11.4 0.0 48 69 19 40 4 49 0.83 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_163 - 236 SSB PF00436.20 104 1.5e-12 41.4 0.1 1 1 1e-14 2.3e-12 40.8 0.1 3 101 43 136 41 139 0.83 # 166368 # 167075 # -1 # ID=1_163;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_88 - 300 Methyltransf_18 PF12847.2 112 9.2e-05 17.1 0.0 1 1 7.7e-07 0.00018 16.2 0.0 2 108 70 174 69 178 0.76 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 UvrD_C_2 PF13538.1 104 7.4e-23 74.8 0.0 1 1 1.8e-24 2.1e-22 73.4 0.0 2 104 258 395 257 395 0.77 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_128 - 663 UvrD_C_2 PF13538.1 104 1.1e-12 42.1 0.0 1 1 3.6e-14 4.1e-12 40.3 0.0 46 103 553 625 509 626 0.72 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_189 - 174 Ribosomal_L1 PF00687.16 220 0.00026 14.4 1.8 1 1 1.4e-06 0.00033 14.1 1.8 12 125 24 136 15 168 0.85 # 176454 # 176975 # -1 # ID=1_189;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 1_88 - 300 MetW PF07021.7 193 0.00011 15.7 0.0 1 1 8.7e-07 0.0002 14.8 0.0 13 80 69 133 59 137 0.91 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 AAA_22 PF13401.1 131 7.8e-06 20.2 0.1 1 1 3.7e-07 2.1e-05 18.7 0.1 6 119 33 142 27 153 0.62 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_138 - 558 AAA_22 PF13401.1 131 6.4e-05 17.2 1.3 1 1 0.00037 0.021 9.0 0.0 9 42 275 300 271 377 0.73 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_161 - 392 AAA_22 PF13401.1 131 0.00022 15.4 0.0 1 1 8e-06 0.00046 14.4 0.0 5 90 71 163 67 173 0.72 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_87 - 210 AAA_22 PF13401.1 131 0.00068 13.9 0.0 1 1 2.1e-05 0.0012 13.1 0.0 5 28 19 42 15 105 0.81 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 SRP54 PF00448.17 196 0.00038 14.0 0.1 1 1 7.3e-06 0.0017 11.9 0.1 3 184 33 212 31 219 0.75 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 AAA_17 PF13207.1 121 7.6e-07 24.1 0.6 1 1 1.5e-08 1.8e-06 22.9 0.6 1 101 20 142 20 171 0.49 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_138 - 558 AAA_17 PF13207.1 121 1.7e-05 19.7 0.3 1 1 1.3e-06 0.00016 16.6 0.0 6 109 277 415 273 435 0.69 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_87 - 210 AAA_21 PF13304.1 303 0.0019 12.2 1.6 1 1 5.2e-05 0.012 9.6 1.6 2 19 21 38 20 189 0.76 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_150 - 130 Prok_Ub PF14454.1 65 0.00025 14.8 0.1 1 1 2.1e-06 0.00049 13.8 0.1 12 41 75 104 71 112 0.86 # 158978 # 159367 # -1 # ID=1_150;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.382 1_201 - 621 Helicase_C PF00271.26 78 2e-14 47.3 0.1 1 1 2.3e-16 5.4e-14 46.0 0.1 10 78 482 551 477 551 0.95 # 180684 # 182546 # -1 # ID=1_201;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_161 - 392 PhoH PF02562.11 205 0.00018 14.9 0.1 1 2 0.00022 0.05 6.9 0.1 129 156 18 45 5 58 0.83 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_161 - 392 PhoH PF02562.11 205 0.00018 14.9 0.1 2 2 0.00053 0.12 5.6 0.0 19 53 70 104 64 122 0.80 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_87 - 210 SKI PF01202.17 158 0.00039 14.4 1.1 1 2 0.0052 1.2 3.1 0.1 1 12 27 38 27 41 0.87 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 SKI PF01202.17 158 0.00039 14.4 1.1 2 2 3.4e-05 0.0077 10.2 0.1 83 157 129 197 115 198 0.78 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 Cytidylate_kin2 PF13189.1 179 0.002 12.1 1.7 1 1 1e-05 0.0024 11.9 0.3 112 156 129 172 126 190 0.84 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 SMC_N PF02463.14 220 0.0024 11.2 0.0 1 1 1.8e-05 0.0041 10.4 0.0 20 62 14 58 4 80 0.77 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_128 - 663 Exonuc_V_gamma PF04257.9 805 2.9e-05 16.3 0.0 1 1 2.1e-07 4.9e-05 15.5 0.0 513 670 455 608 446 624 0.80 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_169 - 397 Arch_ATPase PF01637.13 234 2e-06 21.7 0.3 1 1 4.6e-08 3.5e-06 20.9 0.3 7 123 18 145 16 177 0.63 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_161 - 392 Arch_ATPase PF01637.13 234 9.7e-06 19.5 0.0 1 1 3.1e-07 2.3e-05 18.2 0.0 21 56 71 108 68 158 0.75 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_53 - 363 Arch_ATPase PF01637.13 234 2.5e-05 18.1 0.3 1 1 7.1e-07 5.4e-05 17.0 0.3 29 154 100 245 87 258 0.63 # 88352 # 89440 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_169 - 397 AAA_16 PF13191.1 185 0.00013 16.1 0.0 1 1 2.7e-06 0.00021 15.4 0.0 20 61 27 67 15 94 0.76 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 AAA_16 PF13191.1 185 0.00067 13.7 0.1 1 1 1.7e-05 0.0013 12.8 0.1 25 44 19 38 6 52 0.87 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_138 - 558 AAA_16 PF13191.1 185 0.0062 10.6 3.1 1 2 0.0027 0.21 5.6 0.0 27 48 273 294 266 306 0.84 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_138 - 558 AAA_16 PF13191.1 185 0.0062 10.6 3.1 2 2 0.018 1.4 3.0 0.0 141 184 321 376 310 377 0.61 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_87 - 210 AAA_23 PF13476.1 202 0.0011 13.4 0.6 1 1 9e-06 0.0021 12.5 0.6 19 39 18 38 12 174 0.63 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 AAA_18 PF13238.1 129 1.1e-08 29.6 0.2 1 1 1.9e-10 2.2e-08 28.6 0.2 2 121 22 163 22 172 0.67 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_138 - 558 AAA_18 PF13238.1 129 0.0019 12.6 2.3 1 1 8.4e-05 0.0096 10.3 0.0 4 91 276 373 275 386 0.58 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_49 - 135 AAA_13 PF13166.1 712 1.4e-06 21.1 5.8 1 1 6.9e-09 1.6e-06 20.9 5.8 381 481 11 104 3 110 0.74 # 84604 # 85008 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_161 - 392 KaiC PF06745.8 227 3.9e-08 26.7 0.0 1 1 3.8e-10 8.7e-08 25.6 0.0 1 75 51 132 51 140 0.77 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_53 - 363 AAA_14 PF13173.1 128 0.00087 13.3 0.3 1 1 1.2e-05 0.0027 11.7 0.2 12 102 101 192 99 209 0.60 # 88352 # 89440 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_169 - 397 AAA_29 PF13555.1 62 4e-05 17.2 0.1 1 1 1e-06 0.00012 15.7 0.1 22 46 30 54 18 66 0.77 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 AAA_29 PF13555.1 62 0.00031 14.3 0.2 1 1 4.7e-06 0.00054 13.6 0.2 24 39 19 34 8 36 0.81 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_138 - 558 AAA PF00004.24 132 3.2e-29 95.9 1.9 1 1 4e-30 1.8e-28 93.4 0.0 4 131 276 403 273 404 0.89 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_53 - 363 AAA PF00004.24 132 0.00027 15.3 1.3 1 1 2.5e-05 0.0012 13.2 1.3 2 110 95 259 94 265 0.66 # 88352 # 89440 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_161 - 392 AAA PF00004.24 132 0.00085 13.6 0.1 1 1 8.6e-05 0.004 11.5 0.1 3 107 75 214 73 223 0.50 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_169 - 397 AAA PF00004.24 132 0.00085 13.6 0.1 1 1 5.5e-05 0.0025 12.1 0.1 2 67 35 124 34 145 0.70 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 AAA PF00004.24 132 0.0018 12.6 0.1 1 1 0.00013 0.006 10.9 0.0 2 18 22 38 21 86 0.90 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_106 - 333 Ribosomal_S8 PF00410.14 129 0.0021 12.0 1.9 1 1 2.8e-05 0.0064 10.4 1.9 30 83 132 187 119 241 0.70 # 127420 # 128418 # -1 # ID=1_106;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_128 - 663 UvrD_C PF13361.1 351 1.7e-95 314.5 8.0 1 1 1.2e-97 2.8e-95 313.7 8.0 1 350 295 629 295 630 0.98 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_87 - 210 MMR_HSR1 PF01926.18 116 5.9e-05 17.1 0.0 1 1 4.7e-07 0.00011 16.3 0.0 3 57 22 136 20 205 0.59 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_88 - 300 N6_Mtase PF02384.11 311 2.7e-25 83.1 0.0 1 1 2.7e-27 6.1e-25 81.9 0.0 21 244 45 239 41 286 0.84 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_140 - 56 KOW PF00467.24 32 4.1e-06 20.5 0.1 1 1 2.6e-08 5.9e-06 20.0 0.1 3 29 8 36 6 47 0.82 # 153911 # 154078 # -1 # ID=1_140;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.333 1_169 - 397 DUF258 PF03193.11 161 9.7e-06 18.9 0.0 1 1 1.5e-07 1.7e-05 18.2 0.0 15 74 11 70 2 94 0.83 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 DUF258 PF03193.11 161 2.6e-05 17.5 0.0 1 1 5.1e-07 5.9e-05 16.4 0.0 34 97 17 114 1 136 0.64 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 AAA_33 PF13671.1 143 0.00057 13.9 0.6 1 1 1.7e-05 0.0039 11.2 0.6 3 20 22 39 20 174 0.59 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_53 - 363 DnaB_C PF03796.10 259 9e-19 61.4 0.0 1 1 1e-20 1.2e-18 61.0 0.0 1 240 73 329 73 346 0.79 # 88352 # 89440 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_161 - 392 DnaB_C PF03796.10 259 0.0011 11.9 0.0 1 1 3.3e-05 0.0038 10.2 0.0 2 54 51 105 50 107 0.89 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_88 - 300 Methyltransf_26 PF13659.1 117 4.9e-17 56.2 0.0 1 1 3.3e-19 7.7e-17 55.5 0.0 1 116 70 178 70 179 0.86 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 AAA_30 PF13604.1 196 1.3e-22 74.4 0.0 1 1 1.5e-24 1.8e-22 74.0 0.0 15 179 28 198 10 212 0.80 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_128 - 663 AAA_30 PF13604.1 196 3.7e-07 24.0 0.1 1 1 1.5e-08 1.7e-06 21.8 0.2 2 67 20 84 19 113 0.83 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_88 - 300 MTS PF05175.9 170 5.8e-06 19.8 0.0 1 1 4.9e-08 1.1e-05 18.9 0.0 33 149 71 186 57 204 0.71 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_201 - 621 Helicase_C_4 PF13871.1 278 0.0015 12.0 0.1 1 2 0.063 15 -1.0 0.0 174 266 388 479 381 491 0.64 # 180684 # 182546 # -1 # ID=1_201;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_201 - 621 Helicase_C_4 PF13871.1 278 0.0015 12.0 0.1 2 2 2.7e-05 0.0063 10.0 0.0 53 114 497 551 469 565 0.82 # 180684 # 182546 # -1 # ID=1_201;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_49 - 135 AAA_27 PF13514.1 1111 0.00061 11.6 3.3 1 1 3e-06 0.0007 11.4 3.3 746 834 10 93 3 107 0.76 # 84604 # 85008 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_161 - 392 RecA PF00154.16 323 9e-101 331.2 0.1 1 1 6e-103 1.4e-100 330.5 0.1 5 291 23 319 19 363 0.92 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_87 - 210 ABC_tran PF00005.22 137 6.7e-05 17.3 0.1 1 1 7.6e-07 8.8e-05 16.9 0.1 7 31 14 38 9 155 0.91 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 ABC_tran PF00005.22 137 0.00068 14.0 0.3 1 1 4.3e-05 0.0049 11.3 0.1 10 42 30 62 26 222 0.76 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_87 - 210 TIGR03263 TIGR03263 180 1.6e-30 99.8 0.0 1 1 9.1e-33 2.1e-30 99.4 0.0 2 179 19 198 18 199 0.87 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_88 - 300 Eco57I PF07669.6 106 1.5e-13 45.2 0.0 1 1 2.6e-15 6.1e-13 43.2 0.0 3 104 129 229 125 231 0.89 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_128 - 663 AAA_19 PF13245.1 76 3.5e-11 36.8 0.0 1 1 6e-13 6.9e-11 35.9 0.0 6 74 30 102 25 104 0.76 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_169 - 397 AAA_19 PF13245.1 76 3.5e-06 20.8 0.1 1 1 6e-08 6.9e-06 19.9 0.1 15 75 36 91 27 92 0.80 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_169 - 397 Helicase_RecD PF05127.9 177 3e-06 21.1 0.0 1 1 2.2e-08 5e-06 20.3 0.0 4 118 38 143 35 147 0.77 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_154 - 276 ThiF PF00899.16 136 2.2e-11 37.8 0.8 1 1 3.4e-13 7.9e-11 36.0 0.6 5 125 24 162 20 170 0.79 # 160833 # 161660 # -1 # ID=1_154;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.356 1_119 - 1140 ResIII PF04851.10 184 2.6e-06 21.5 0.0 1 2 0.016 3.7 1.4 0.0 26 73 317 375 288 449 0.65 # 134542 # 137961 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 1_119 - 1140 ResIII PF04851.10 184 2.6e-06 21.5 0.0 2 2 3.3e-07 7.5e-05 16.7 0.0 105 181 534 651 472 653 0.58 # 134542 # 137961 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 1_88 - 300 Methyltransf_31 PF13847.1 152 1.3e-06 22.2 0.0 1 1 8.7e-09 2e-06 21.6 0.0 4 126 70 199 68 240 0.77 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_49 - 135 DUF3584 PF12128.3 1201 0.00024 12.6 3.4 1 1 1.2e-06 0.00027 12.4 3.4 274 356 14 95 4 114 0.46 # 84604 # 85008 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_169 - 397 Viral_helicase1 PF01443.13 234 1.2e-09 32.0 0.1 1 2 1.6e-05 0.0012 12.4 0.2 4 110 37 161 35 178 0.75 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_169 - 397 Viral_helicase1 PF01443.13 234 1.2e-09 32.0 0.1 2 2 1.8e-06 0.00014 15.5 0.0 183 232 339 394 291 396 0.75 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_128 - 663 Viral_helicase1 PF01443.13 234 4.9e-08 26.8 1.0 1 3 0.0034 0.26 4.8 0.0 2 21 36 55 35 94 0.80 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_128 - 663 Viral_helicase1 PF01443.13 234 4.9e-08 26.8 1.0 2 3 0.00048 0.037 7.6 0.1 60 140 229 313 213 361 0.67 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_128 - 663 Viral_helicase1 PF01443.13 234 4.9e-08 26.8 1.0 3 3 4.5e-05 0.0034 11.0 0.0 164 232 547 625 466 627 0.61 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_138 - 558 Viral_helicase1 PF01443.13 234 0.00089 12.9 0.0 1 1 3e-05 0.0023 11.5 0.0 2 78 274 345 273 348 0.70 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_169 - 397 DUF2075 PF09848.4 352 7.5e-06 19.2 0.2 1 1 7.8e-08 1.8e-05 17.9 0.0 1 93 31 125 31 200 0.76 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_201 - 621 DEAD PF00270.24 169 9.3e-07 22.5 0.1 1 1 6.1e-08 4.7e-06 20.3 0.0 22 144 123 242 103 274 0.73 # 180684 # 182546 # -1 # ID=1_201;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_2 - 596 DEAD PF00270.24 169 7.3e-05 16.4 0.0 1 1 3.5e-06 0.00027 14.5 0.0 4 163 46 205 43 209 0.73 # 271 # 2058 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.380 1_128 - 663 DEAD PF00270.24 169 0.0023 11.5 0.7 1 1 0.0002 0.015 8.8 0.1 4 71 24 101 19 155 0.61 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_169 - 397 AAA_11 PF13086.1 236 9.2e-06 19.4 0.1 1 2 0.011 1.3 2.6 0.0 6 41 15 55 10 96 0.69 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_169 - 397 AAA_11 PF13086.1 236 9.2e-06 19.4 0.1 2 2 2.3e-06 0.00026 14.6 0.0 192 232 115 154 99 157 0.88 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_128 - 663 AAA_11 PF13086.1 236 3.8e-05 17.4 0.3 1 2 3.1e-06 0.00036 14.2 0.0 2 95 8 111 7 270 0.72 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_128 - 663 AAA_11 PF13086.1 236 3.8e-05 17.4 0.3 2 2 0.037 4.2 0.9 0.2 78 174 446 556 405 585 0.57 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_87 - 210 Guanylate_kin PF00625.16 183 3.7e-19 62.9 0.0 1 1 6.8e-21 7.8e-19 61.9 0.0 3 176 19 193 17 200 0.79 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_228 - 262 Guanylate_kin PF00625.16 183 0.0014 12.2 1.6 1 1 1.9e-05 0.0022 11.5 1.6 90 182 85 177 56 178 0.83 # 203852 # 204637 # 1 # ID=1_228;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.415 1_57 - 146 AAA_32 PF13654.1 509 0.0012 11.6 7.4 1 1 6.7e-06 0.0015 11.2 7.4 175 282 11 119 6 124 0.79 # 91346 # 91783 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_137 - 132 Pox_A32 PF04665.7 241 0.00011 15.6 0.3 1 1 5.5e-07 0.00013 15.4 0.3 81 195 12 123 1 127 0.70 # 151488 # 151883 # -1 # ID=1_137;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.366 1_169 - 397 PIF1 PF05970.9 364 7.1e-15 48.8 0.8 1 1 8.1e-17 1.9e-14 47.4 0.2 2 162 11 160 10 168 0.84 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_88 - 300 Methyltransf_23 PF13489.1 161 0.00019 15.2 0.0 1 1 2.6e-06 0.0006 13.6 0.0 22 85 69 135 58 208 0.70 # 110655 # 111554 # -1 # ID=1_88;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.378 1_87 - 210 Gtr1_RagA PF04670.7 232 3e-06 20.6 0.0 1 1 6.8e-08 1.6e-05 18.2 0.0 4 143 23 161 20 180 0.71 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_161 - 392 RNA_helicase PF00910.17 107 0.0013 13.0 0.2 1 2 6e-05 0.014 9.7 0.0 3 36 75 107 73 115 0.81 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_161 - 392 RNA_helicase PF00910.17 107 0.0013 13.0 0.2 2 2 0.057 13 0.1 0.1 24 62 262 300 258 309 0.81 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_49 - 135 Ribosomal_L29 PF00831.18 58 0.055 7.3 8.3 1 2 0.039 8.9 0.2 0.8 10 22 24 36 17 48 0.66 # 84604 # 85008 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_49 - 135 Ribosomal_L29 PF00831.18 58 0.055 7.3 8.3 2 2 0.0001 0.023 8.5 3.2 10 29 56 75 40 82 0.83 # 84604 # 85008 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.368 1_2 - 596 Terminase_GpA PF05876.7 557 1.2e-10 34.4 0.0 1 2 1.5e-12 3.5e-10 32.9 0.0 32 166 59 197 35 216 0.77 # 271 # 2058 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.380 1_2 - 596 Terminase_GpA PF05876.7 557 1.2e-10 34.4 0.0 2 2 0.045 10 -1.7 0.0 486 519 219 252 195 256 0.82 # 271 # 2058 # 1 # ID=1_2;partial=00;start_type=TTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.380 1_80 - 1174 tRNA_anti-codon PF01336.20 75 6.3e-07 23.3 0.2 1 1 1.6e-08 1.8e-06 21.8 0.2 3 56 1093 1151 1091 1160 0.94 # 103644 # 107165 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.376 1_165 - 120 tRNA_anti-codon PF01336.20 75 7.6e-07 23.1 0.5 1 1 8.8e-09 1e-06 22.7 0.5 1 71 27 107 27 111 0.83 # 167321 # 167680 # -1 # ID=1_165;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.353 1_128 - 663 UvrD-helicase PF00580.16 315 3.2e-67 221.1 6.5 1 2 1.4e-69 3.2e-67 221.1 6.5 1 314 20 289 20 290 0.93 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_128 - 663 UvrD-helicase PF00580.16 315 3.2e-67 221.1 6.5 2 2 0.097 22 -1.8 2.8 230 230 491 491 297 649 0.61 # 144201 # 146189 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.365 1_53 - 363 AAA_25 PF13481.1 194 2.1e-14 47.4 0.0 1 1 4.9e-16 3.8e-14 46.6 0.0 10 192 69 263 62 265 0.77 # 88352 # 89440 # 1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.366 1_161 - 392 AAA_25 PF13481.1 194 1.8e-06 21.5 0.0 1 1 5e-08 3.8e-06 20.5 0.0 14 87 50 123 41 220 0.74 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_138 - 558 AAA_25 PF13481.1 194 0.00017 15.1 1.6 1 2 0.013 0.99 2.8 0.2 37 55 274 292 266 300 0.85 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_138 - 558 AAA_25 PF13481.1 194 0.00017 15.1 1.6 2 2 9.5e-05 0.0073 9.8 0.0 119 186 307 377 293 381 0.77 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_201 - 621 SNF2_N PF00176.18 299 1.6e-34 113.1 0.0 1 1 2.1e-36 2.4e-34 112.5 0.0 30 272 120 371 104 414 0.79 # 180684 # 182546 # -1 # ID=1_201;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.379 1_119 - 1140 SNF2_N PF00176.18 299 6.5e-11 35.6 0.0 1 2 3.6e-07 4.1e-05 16.5 0.0 24 95 315 391 282 439 0.83 # 134542 # 137961 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 1_119 - 1140 SNF2_N PF00176.18 299 6.5e-11 35.6 0.0 2 2 4.5e-07 5.2e-05 16.2 0.0 135 261 613 762 603 805 0.73 # 134542 # 137961 # -1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.391 1_161 - 392 Rad51 PF08423.6 256 2.1e-08 27.4 0.0 1 1 5.8e-10 1.3e-07 24.8 0.0 15 223 46 251 37 258 0.78 # 164771 # 165946 # -1 # ID=1_161;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_138 - 558 AAA_5 PF07728.9 139 7.5e-05 16.6 0.1 1 1 2e-05 0.0015 12.3 0.0 6 77 277 341 274 347 0.70 # 151884 # 153557 # -1 # ID=1_138;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.376 1_87 - 210 AAA_5 PF07728.9 139 0.0015 12.3 0.1 1 1 9.2e-05 0.0071 10.2 0.0 3 19 22 38 21 40 0.93 # 110001 # 110630 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_169 - 397 AAA_5 PF07728.9 139 0.0026 11.6 0.3 1 1 0.00029 0.022 8.6 0.0 3 42 35 74 33 158 0.72 # 168761 # 169951 # -1 # ID=1_169;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.359 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/34ce1d95-5822-4126-b050-faa9e082b1fc # Target file: checkm_output/bins/pGCA_002074095.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002074095.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/34ce1d95-5822-4126-b050-faa9e082b1fc checkm_output/bins/pGCA_002074095.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:11 2020 # [ok]