# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 154 Thymidylate_kin PF02223.12 186 3.3e-07 22.7 0.1 1 2 2.9e-06 0.00028 13.2 0.0 1 25 23 47 23 64 0.84 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_29 - 154 Thymidylate_kin PF02223.12 186 3.3e-07 22.7 0.1 2 2 8.4e-05 0.0084 8.4 0.0 110 180 76 141 45 147 0.76 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_73 - 597 Terminase_6 PF03237.10 384 6.3e-07 21.3 0.1 1 2 0.0009 0.089 4.3 0.0 2 51 140 190 139 232 0.78 # 56471 # 58261 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_73 - 597 Terminase_6 PF03237.10 384 6.3e-07 21.3 0.1 2 2 5.7e-07 5.6e-05 14.9 0.1 186 257 346 416 300 448 0.78 # 56471 # 58261 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_50 - 322 SSB PF00436.20 104 0.00043 13.1 0.3 1 1 2.4e-05 0.0023 10.7 0.3 2 55 11 58 10 115 0.83 # 40911 # 41876 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.352 1_13 - 196 AAA_22 PF13401.1 131 5e-05 16.4 0.0 1 1 8.5e-07 8.5e-05 15.6 0.0 10 123 7 114 2 118 0.76 # 9394 # 9981 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_29 - 154 AAA_17 PF13207.1 121 0.00014 15.6 0.1 1 1 1.8e-06 0.00018 15.2 0.1 1 78 20 108 20 150 0.58 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_46 - 345 Miro PF08477.8 119 0.00043 13.7 0.1 1 1 1.8e-05 0.0018 11.7 0.0 3 25 23 45 22 133 0.74 # 38525 # 39559 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_1 - 91 Arf PF00025.16 175 7.6e-05 14.9 0.6 1 1 9.2e-07 9.1e-05 14.6 0.6 94 136 31 73 22 86 0.86 # 1 # 273 # -1 # ID=1_1;partial=10;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_73 - 597 Terminase_1 PF03354.10 477 1.1e-77 254.3 3.9 1 1 1.4e-79 1.4e-77 254.0 3.9 1 470 112 574 112 581 0.93 # 56471 # 58261 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.365 1_29 - 154 Zeta_toxin PF06414.7 201 0.00028 12.9 0.0 1 2 1.9e-05 0.0019 10.2 0.0 10 46 12 48 4 110 0.78 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_29 - 154 Zeta_toxin PF06414.7 201 0.00028 12.9 0.0 2 2 0.017 1.7 0.6 0.0 96 111 130 145 128 151 0.79 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_20 - 183 AAA_18 PF13238.1 129 1.1e-06 21.9 0.0 1 1 5.8e-08 2.9e-06 20.5 0.0 3 119 5 139 4 154 0.68 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_29 - 154 AAA_18 PF13238.1 129 8.5e-06 19.0 0.2 1 1 1.1e-05 0.00056 13.1 0.2 1 86 21 118 21 139 0.60 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_29 - 154 AAA_14 PF13173.1 128 6.6e-05 15.7 0.4 1 1 7.2e-06 0.00024 13.9 0.4 2 27 18 42 17 151 0.83 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_46 - 345 AAA_14 PF13173.1 128 0.00034 13.4 1.5 1 1 1.4e-05 0.00048 13.0 0.2 6 91 23 116 19 137 0.65 # 38525 # 39559 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_20 - 183 AAA_14 PF13173.1 128 0.00065 12.5 0.0 1 1 4.3e-05 0.0014 11.4 0.0 4 36 2 32 1 72 0.74 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_13 - 196 TK PF00265.13 176 1.1e-21 70.1 0.1 1 1 1.3e-23 1.3e-21 69.9 0.1 2 176 2 188 1 188 0.80 # 9394 # 9981 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_29 - 154 AAA_33 PF13671.1 143 0.00016 14.5 0.0 1 2 0.0013 0.066 6.0 0.0 2 28 21 47 20 51 0.83 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_29 - 154 AAA_33 PF13671.1 143 0.00016 14.5 0.0 2 2 0.00061 0.03 7.1 0.0 76 118 50 105 40 113 0.74 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_20 - 183 AAA_33 PF13671.1 143 0.00027 13.7 0.0 1 2 2.8e-05 0.0014 11.4 0.0 3 32 4 33 2 87 0.80 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_20 - 183 AAA_33 PF13671.1 143 0.00027 13.7 0.0 2 2 0.078 3.8 0.3 0.0 99 124 113 138 99 159 0.72 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_38 - 531 DnaB_C PF03796.10 259 1.1e-15 50.1 0.0 1 1 1.7e-17 1.7e-15 49.4 0.0 18 215 226 442 217 493 0.77 # 29807 # 31399 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_20 - 183 FtsK_SpoIIIE PF01580.13 205 0.00057 12.3 0.1 1 1 9.7e-06 0.00096 11.5 0.1 43 60 5 22 3 28 0.88 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_20 - 183 TIGR03263 TIGR03263 180 9.2e-22 70.1 0.0 1 1 1.1e-23 1.1e-21 69.9 0.0 3 179 2 178 1 179 0.81 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_53 - 110 Ribosomal_L2 PF00181.18 77 0.00068 12.5 0.0 1 2 1.9e-05 0.0019 11.1 0.0 27 62 32 68 27 83 0.79 # 42911 # 43240 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 1_53 - 110 Ribosomal_L2 PF00181.18 77 0.00068 12.5 0.0 2 2 0.055 5.4 0.0 0.0 25 44 67 88 65 104 0.73 # 42911 # 43240 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.321 1_13 - 196 Zot PF05707.7 193 0.00073 11.9 0.0 1 1 9.4e-06 0.00093 11.6 0.0 2 89 3 89 2 120 0.70 # 9394 # 9981 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.315 1_84 - 1695 DUF3584 PF12128.3 1201 0.002 8.3 26.9 1 3 6.8e-05 0.0067 6.6 11.6 605 751 33 183 11 196 0.78 # 64856 # 69940 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_84 - 1695 DUF3584 PF12128.3 1201 0.002 8.3 26.9 2 3 7e-06 0.00069 9.8 4.6 467 531 190 254 178 258 0.90 # 64856 # 69940 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_84 - 1695 DUF3584 PF12128.3 1201 0.002 8.3 26.9 3 3 0.022 2.2 -1.7 0.1 824 893 552 621 498 645 0.71 # 64856 # 69940 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.392 1_59 - 345 PrmA PF06325.8 295 0.0014 10.7 1.7 1 2 0.028 2.8 -0.2 0.2 32 89 28 84 15 102 0.67 # 46193 # 47227 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_59 - 345 PrmA PF06325.8 295 0.0014 10.7 1.7 2 2 2.9e-05 0.0028 9.6 0.6 38 108 98 175 71 183 0.67 # 46193 # 47227 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.328 1_29 - 154 CPT PF07931.7 174 2.8e-08 26.4 0.1 1 2 4.7e-08 4.6e-06 19.2 0.1 2 36 19 51 18 114 0.85 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_29 - 154 CPT PF07931.7 174 2.8e-08 26.4 0.1 2 2 0.00064 0.063 5.8 0.0 103 170 78 148 66 151 0.63 # 22157 # 22618 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.372 1_20 - 183 Guanylate_kin PF00625.16 183 7.5e-17 54.2 0.0 1 1 9.6e-19 9.5e-17 53.9 0.0 4 181 2 178 1 180 0.86 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_46 - 345 AAA_24 PF13479.1 213 3.9e-23 75.0 5.8 1 1 3.9e-23 3.9e-21 68.5 5.1 5 198 21 237 18 275 0.77 # 38525 # 39559 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.362 1_20 - 183 AAA_28 PF13521.1 163 5.2e-06 19.4 0.1 1 1 8.5e-08 8.4e-06 18.7 0.1 2 32 3 33 2 43 0.90 # 13931 # 14479 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ecd61bfe-e428-49a5-b962-af59a7b8c44c # Target file: checkm_output/bins/pGCA_002055965.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002055965.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ecd61bfe-e428-49a5-b962-af59a7b8c44c checkm_output/bins/pGCA_002055965.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:06 2020 # [ok]