# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_4 - 344 Mg_chelatase PF01078.16 207 2.4e-07 22.9 0.0 1 1 3.9e-09 3.6e-07 22.3 0.0 1 49 150 198 150 247 0.87 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 IstB_IS21 PF01695.12 178 0.00046 12.4 0.2 1 1 1.7e-05 0.0016 10.6 0.1 44 62 168 186 163 192 0.88 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 MipZ PF09140.6 261 3.6e-15 48.5 1.3 1 1 3.2e-15 1.5e-13 43.2 1.3 2 138 3 121 2 127 0.83 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 9_1 - 138 MipZ PF09140.6 261 6e-06 18.3 0.1 1 1 2e-07 9.5e-06 17.6 0.1 6 52 8 54 4 119 0.88 # 125 # 538 # -1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.507 3_4 - 344 AAA_22 PF13401.1 131 0.00021 14.3 0.0 1 1 3.8e-06 0.00035 13.5 0.0 4 37 171 215 166 259 0.75 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 ATP_bind_1 PF03029.12 238 0.00022 13.6 0.0 1 1 4e-06 0.00037 12.9 0.0 1 27 176 201 176 206 0.85 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 SRP54 PF00448.17 196 0.00073 11.8 0.5 1 1 2.2e-05 0.002 10.3 0.5 5 96 4 94 1 106 0.75 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 344 AAA_17 PF13207.1 121 2.7e-05 17.8 0.0 1 1 8.5e-07 7.9e-05 16.3 0.0 2 22 174 194 173 238 0.81 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 ArsA_ATPase PF02374.10 305 6.1e-07 21.5 0.3 1 1 1.1e-08 1e-06 20.7 0.3 4 49 3 50 1 64 0.85 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 344 T2SE PF00437.15 272 1.2e-42 138.4 0.0 1 1 1.6e-44 1.5e-42 138.1 0.0 8 269 25 317 19 320 0.96 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 9_1 - 138 Methyltransf_24 PF13578.1 106 0.00031 14.4 0.0 1 1 4.1e-06 0.00039 14.1 0.0 14 89 19 101 5 117 0.65 # 125 # 538 # -1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.507 3_4 - 344 Zeta_toxin PF06414.7 201 9.7e-05 14.3 0.0 1 1 1.6e-06 0.00015 13.7 0.0 15 69 170 227 161 246 0.80 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 VirC1 PF07015.6 231 0.00042 12.2 0.2 1 1 1.9e-05 0.0018 10.2 0.2 4 191 4 194 1 207 0.73 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 2_11 - 219 Fer4_NifH PF00142.13 273 7.5e-05 14.8 0.0 1 1 1.1e-06 0.0001 14.3 0.0 7 45 9 47 1 88 0.92 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 344 AAA_18 PF13238.1 129 4.9e-05 16.5 0.0 1 1 9.9e-07 9.2e-05 15.6 0.0 1 22 174 195 174 225 0.73 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 CbiA PF01656.18 195 5.3e-18 57.9 0.0 1 1 1.6e-19 7.3e-18 57.4 0.0 2 193 5 185 4 187 0.71 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 9_1 - 138 CbiA PF01656.18 195 3.4e-13 42.2 0.2 1 1 1.7e-14 7.9e-13 41.0 0.2 2 125 6 112 5 134 0.79 # 125 # 538 # -1 # ID=9_1;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.507 1_18 - 93 Methyltransf_30 PF05430.6 124 0.00027 13.4 0.0 1 1 4.1e-06 0.00038 13.0 0.0 66 110 29 72 25 87 0.81 # 14006 # 14284 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 3_4 - 344 AAA_29 PF13555.1 62 0.00071 11.9 0.0 1 1 1.9e-05 0.0018 10.7 0.0 9 38 160 186 157 194 0.77 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 AAA PF00004.24 132 0.00068 12.7 0.0 1 1 1.6e-05 0.0015 11.6 0.0 1 35 174 208 174 250 0.81 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_1 - 306 TraG-D_C PF12696.2 128 7.6e-29 93.0 0.0 1 1 2.2e-30 1e-28 92.6 0.0 2 127 64 186 63 187 0.88 # 2 # 919 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 2_25 - 562 TraG-D_C PF12696.2 128 1e-07 24.7 0.0 1 1 3.4e-09 1.6e-07 24.1 0.0 1 83 236 317 236 359 0.80 # 18299 # 19984 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.604 2_11 - 219 AAA_31 PF13614.1 157 4.2e-07 22.8 0.1 1 2 4.7e-07 4.4e-05 16.3 0.0 5 55 6 55 2 73 0.83 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 2_11 - 219 AAA_31 PF13614.1 157 4.2e-07 22.8 0.1 2 2 0.0015 0.14 4.9 0.0 112 153 74 116 60 120 0.81 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 344 FtsK_SpoIIIE PF01580.13 205 1.5e-06 20.6 0.0 1 1 2.9e-08 2.7e-06 19.8 0.0 24 59 159 192 139 194 0.78 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 AAA_19 PF13245.1 76 0.00041 12.9 0.0 1 1 1.2e-05 0.0011 11.5 0.0 9 25 171 186 165 195 0.74 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_25 - 562 AAA_10 PF12846.2 304 2.3e-08 26.6 0.0 1 1 1.8e-09 5.5e-08 25.3 0.0 108 297 89 310 48 316 0.66 # 18299 # 19984 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.604 2_11 - 219 AAA_10 PF12846.2 304 0.00012 14.4 0.0 1 1 4.9e-06 0.00015 14.0 0.0 5 47 4 50 2 136 0.87 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 3_4 - 344 AAA_10 PF12846.2 304 0.00023 13.4 0.0 1 1 1.5e-05 0.00047 12.4 0.0 2 33 172 203 171 213 0.81 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 Viral_helicase1 PF01443.13 234 0.0008 11.7 0.0 1 1 1.6e-05 0.0015 10.9 0.0 1 30 174 200 174 228 0.78 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_1 - 306 TrwB_AAD_bind PF10412.4 386 2.6e-23 75.0 0.0 1 1 6.8e-25 3.2e-23 74.7 0.0 245 378 64 198 16 207 0.89 # 2 # 919 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 2_25 - 562 TrwB_AAD_bind PF10412.4 386 5.9e-05 14.6 0.0 1 1 2e-06 9.4e-05 13.9 0.0 248 371 240 363 223 371 0.71 # 18299 # 19984 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.604 1_1 - 306 T4SS-DNA_transf PF02534.9 469 5.4e-37 120.2 0.1 1 2 8.4e-38 3.9e-36 117.3 0.0 251 455 2 221 1 226 0.89 # 2 # 919 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 1_1 - 306 T4SS-DNA_transf PF02534.9 469 5.4e-37 120.2 0.1 2 2 0.02 0.94 0.7 0.0 85 117 240 273 235 288 0.81 # 2 # 919 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.565 3_8 - 232 T4SS-DNA_transf PF02534.9 469 4.1e-35 114.0 0.0 1 1 1.1e-36 5.1e-35 113.7 0.0 31 164 23 158 3 175 0.86 # 5582 # 6277 # 1 # ID=3_8;partial=01;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 Pox_A32 PF04665.7 241 0.0006 11.9 0.0 1 1 9.5e-06 0.00088 11.4 0.0 13 42 171 200 161 225 0.79 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 3_4 - 344 AAA_24 PF13479.1 213 0.00025 13.4 0.0 1 1 6.6e-06 0.00061 12.2 0.0 3 23 171 191 169 197 0.87 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_11 - 219 AAA_25 PF13481.1 194 8.8e-05 14.8 0.2 1 1 9.1e-06 0.00042 12.5 0.2 41 65 10 35 4 90 0.83 # 10273 # 10929 # 1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.513 1_31 - 317 AAA_25 PF13481.1 194 0.00072 11.8 0.0 1 1 3.2e-05 0.0015 10.7 0.0 38 97 137 196 131 228 0.78 # 25456 # 26406 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.651 3_4 - 344 AAA_28 PF13521.1 163 0.00012 14.9 0.0 1 1 6.4e-06 0.0006 12.6 0.0 1 20 173 192 173 212 0.77 # 2637 # 3668 # 1 # ID=3_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b7c11c61-12e7-476c-b8b9-e0bdaa1ebe17 # Target file: checkm_output/bins/pGCA_002024305.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002024305.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b7c11c61-12e7-476c-b8b9-e0bdaa1ebe17 checkm_output/bins/pGCA_002024305.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:03 2020 # [ok]