# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_28 - 645 cobW PF02492.14 178 0.00092 11.9 0.0 1 1 1.5e-05 0.0019 10.9 0.0 4 30 255 282 252 297 0.76 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_9 - 204 Thymidylate_kin PF02223.12 186 2.7e-06 20.1 0.0 1 2 9.8e-07 0.00012 14.7 0.1 1 25 34 58 34 62 0.90 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 Thymidylate_kin PF02223.12 186 2.7e-06 20.1 0.0 2 2 0.0031 0.4 3.3 0.0 105 141 131 166 124 183 0.80 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 CoaE PF01121.15 180 3.4e-06 19.8 0.0 1 2 3.1e-05 0.0039 9.8 0.1 2 31 31 62 30 93 0.88 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 CoaE PF01121.15 180 3.4e-06 19.8 0.0 2 2 8.7e-05 0.011 8.3 0.0 118 151 139 172 78 199 0.82 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 NB-ARC PF00931.17 287 1.2e-06 20.8 0.0 1 2 4.2e-07 5.3e-05 15.4 0.0 13 45 24 56 10 66 0.75 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 NB-ARC PF00931.17 287 1.2e-06 20.8 0.0 2 2 0.0019 0.25 3.4 0.0 31 59 125 154 121 183 0.86 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_28 - 645 AAA_22 PF13401.1 131 1.6e-06 21.6 0.1 1 2 0.00015 0.0096 9.3 0.0 3 29 250 276 247 365 0.87 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 AAA_22 PF13401.1 131 1.6e-06 21.6 0.1 2 2 0.00016 0.01 9.2 0.0 88 111 497 535 431 548 0.71 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_9 - 204 AAA_22 PF13401.1 131 5.1e-05 16.7 0.0 1 1 1.6e-06 0.0001 15.7 0.0 8 41 33 71 25 117 0.68 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 PRK PF00485.13 194 5.7e-12 38.8 0.1 1 1 2.4e-13 3e-11 36.4 0.1 2 150 32 167 31 198 0.80 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 KAP_NTPase PF07693.9 325 0.00012 14.4 0.0 1 1 9.1e-07 0.00012 14.4 0.0 10 47 18 56 10 192 0.82 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_9 - 204 AAA_17 PF13207.1 121 1.4e-14 48.2 0.1 1 1 2.6e-16 3.3e-14 47.0 0.1 3 114 33 164 31 174 0.65 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_28 - 645 Arf PF00025.16 175 0.00017 14.1 0.0 1 1 6.8e-06 0.00043 12.8 0.0 8 42 246 279 239 301 0.82 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 2_4 - 191 Arf PF00025.16 175 0.00018 14.0 0.0 1 1 4.5e-06 0.00028 13.4 0.0 92 146 62 116 52 136 0.88 # 2731 # 3303 # -1 # ID=2_4;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.391 1_9 - 204 Zeta_toxin PF06414.7 201 2.5e-05 16.7 0.0 1 1 2.8e-07 3.6e-05 16.2 0.0 14 49 25 62 14 77 0.78 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 2_21 - 98 AAA_23 PF13476.1 202 0.00019 15.0 2.3 1 1 1.7e-06 0.00022 14.8 2.3 102 176 11 87 3 94 0.76 # 14317 # 14610 # -1 # ID=2_21;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.350 1_9 - 204 AAA_18 PF13238.1 129 9.2e-12 38.7 0.1 1 1 1.3e-13 1.6e-11 37.9 0.1 3 123 34 173 33 195 0.83 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_25 - 296 YchF-GTPase_C PF06071.8 84 0.00057 12.9 1.7 1 1 9.8e-06 0.0012 11.9 1.7 18 75 186 245 175 249 0.80 # 17547 # 18434 # -1 # ID=1_25;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.357 1_28 - 645 AAA PF00004.24 132 0.00024 14.6 0.1 1 2 0.00038 0.048 7.1 0.1 2 49 255 298 254 314 0.90 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 AAA PF00004.24 132 0.00024 14.6 0.1 2 2 0.0027 0.35 4.3 0.0 59 79 506 527 459 558 0.70 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 11_1 - 92 CobU PF02283.11 167 0.00013 14.7 0.0 1 1 2.6e-06 0.00017 14.3 0.0 38 121 4 82 2 87 0.86 # 1 # 276 # 1 # ID=11_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.395 8_2 - 148 CobU PF02283.11 167 0.00038 13.1 0.1 1 1 7.3e-06 0.00047 12.8 0.1 36 121 58 138 34 143 0.84 # 97 # 540 # 1 # ID=8_2;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.399 1_33 - 861 TraG-D_C PF12696.2 128 4.1e-36 116.9 0.2 1 1 1.1e-37 1.5e-35 115.2 0.1 2 127 560 676 559 677 0.86 # 25735 # 28317 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_28 - 645 NTPase_1 PF03266.10 168 0.00025 14.0 0.0 1 1 6.1e-06 0.00078 12.4 0.0 4 60 256 312 253 348 0.74 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_9 - 204 AAA_33 PF13671.1 143 0.0002 14.5 0.0 1 1 4.1e-06 0.00053 13.1 0.0 6 44 36 77 31 109 0.60 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_28 - 645 ABC_tran PF00005.22 137 0.00088 12.8 1.7 1 2 0.083 11 -0.4 0.2 57 100 115 173 69 196 0.57 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 ABC_tran PF00005.22 137 0.00088 12.8 1.7 2 2 2.2e-05 0.0027 11.2 0.1 13 84 253 350 247 430 0.64 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 AAA_10 PF12846.2 304 2.6e-65 214.0 0.5 1 1 3.9e-67 4.9e-65 213.1 0.5 1 300 251 597 251 603 0.92 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 ResIII PF04851.10 184 0.00024 14.2 0.1 1 2 0.07 8.9 -0.7 0.9 80 133 85 138 73 257 0.79 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_28 - 645 ResIII PF04851.10 184 0.00024 14.2 0.1 2 2 1.9e-06 0.00024 14.2 0.1 108 164 447 525 416 582 0.76 # 20157 # 22091 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.383 1_9 - 204 Viral_helicase1 PF01443.13 234 0.0016 11.2 0.0 1 1 1.8e-05 0.0023 10.7 0.0 3 21 34 52 32 75 0.79 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_33 - 861 TrwB_AAD_bind PF10412.4 386 7.3e-18 57.5 0.0 1 2 0.001 0.13 4.0 0.0 20 137 186 323 176 342 0.62 # 25735 # 28317 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_33 - 861 TrwB_AAD_bind PF10412.4 386 7.3e-18 57.5 0.0 2 2 6e-18 7.6e-16 50.9 0.0 233 373 548 683 521 697 0.81 # 25735 # 28317 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_9 - 204 Sigma54_activ_2 PF14532.1 138 0.00036 13.8 0.0 1 1 4.3e-06 0.00054 13.3 0.0 2 54 8 61 8 75 0.84 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 1_33 - 861 T4SS-DNA_transf PF02534.9 469 1.2e-49 162.4 1.3 1 2 1.8e-23 2.3e-21 69.1 0.1 48 262 185 416 151 429 0.81 # 25735 # 28317 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_33 - 861 T4SS-DNA_transf PF02534.9 469 1.2e-49 162.4 1.3 2 2 2.1e-30 2.6e-28 92.0 0.1 260 432 514 683 503 695 0.85 # 25735 # 28317 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.369 1_9 - 204 ArgK PF03308.11 267 4.5e-05 15.5 0.0 1 1 4.9e-07 6.2e-05 15.1 0.0 16 54 14 54 5 62 0.77 # 5738 # 6349 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.330 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/43bf6a96-c4f1-41f1-98d2-2f6cfe3d1845 # Target file: checkm_output/bins/pGCA_002024265.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002024265.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/43bf6a96-c4f1-41f1-98d2-2f6cfe3d1845 checkm_output/bins/pGCA_002024265.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:48:00 2020 # [ok]