# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_105 - 114 SSB PF00436.20 104 1e-13 44.2 0.0 1 1 1.1e-15 1.2e-13 43.9 0.0 1 104 2 100 2 100 0.88 # 62105 # 62446 # 1 # ID=1_105;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.325 1_97 - 629 DUF87 PF01935.12 229 5.2e-08 26.0 0.3 1 1 4.7e-10 5.2e-08 26.0 0.3 13 214 236 454 224 469 0.66 # 54876 # 56762 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_30 - 490 AAA_22 PF13401.1 131 6.8e-05 16.1 0.1 1 2 0.00093 0.1 5.8 0.0 48 88 35 73 12 109 0.75 # 11303 # 12772 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 1_30 - 490 AAA_22 PF13401.1 131 6.8e-05 16.1 0.1 2 2 0.00025 0.027 7.7 0.1 70 117 232 282 170 287 0.77 # 11303 # 12772 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 1_60 - 403 T2SE PF00437.15 272 1.1e-37 122.5 0.0 1 1 1.3e-39 1.4e-37 122.0 0.0 5 269 61 327 58 330 0.86 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_60 - 403 AAA_18 PF13238.1 129 0.0051 10.2 0.0 1 2 0.044 4.8 0.6 0.8 24 67 19 59 3 130 0.66 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_60 - 403 AAA_18 PF13238.1 129 0.0051 10.2 0.0 2 2 4.7e-05 0.0051 10.2 0.0 1 42 184 238 184 278 0.76 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_30 - 490 AAA_14 PF13173.1 128 0.00012 15.1 0.3 1 1 3e-06 0.00033 13.6 0.3 37 98 225 288 176 293 0.72 # 11303 # 12772 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.320 1_60 - 403 Sigma54_activat PF00158.21 168 0.00024 13.6 0.0 1 1 4.5e-06 0.00049 12.6 0.0 15 44 174 203 166 215 0.83 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_110 - 840 TraG-D_C PF12696.2 128 1.9e-32 104.9 0.0 1 1 4.5e-34 4.9e-32 103.5 0.0 1 128 412 529 412 529 0.90 # 69096 # 71615 # 1 # ID=1_110;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_37 - 338 Rho_RNA_bind PF07497.7 78 0.00033 13.4 0.1 1 2 6.8e-05 0.0075 9.0 0.0 28 51 89 112 69 126 0.80 # 15751 # 16764 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_37 - 338 Rho_RNA_bind PF07497.7 78 0.00033 13.4 0.1 2 2 0.017 1.9 1.3 0.0 31 50 174 193 163 207 0.79 # 15751 # 16764 # 1 # ID=1_37;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.308 1_60 - 403 FtsK_SpoIIIE PF01580.13 205 3e-05 16.6 0.0 1 2 0.058 6.4 -0.8 0.0 20 51 58 89 51 95 0.89 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_60 - 403 FtsK_SpoIIIE PF01580.13 205 3e-05 16.6 0.0 2 2 1.4e-06 0.00016 14.3 0.0 29 61 172 203 154 248 0.76 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_59 - 268 CoA_binding_3 PF13727.1 175 0.00012 14.9 4.8 1 2 0.00011 0.012 8.5 0.4 37 70 35 68 26 123 0.69 # 27612 # 28415 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 1_59 - 268 CoA_binding_3 PF13727.1 175 0.00012 14.9 4.8 2 2 0.0001 0.011 8.5 0.5 23 75 204 259 189 267 0.72 # 27612 # 28415 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.323 1_97 - 629 AAA_10 PF12846.2 304 4.5e-49 160.5 0.4 1 1 1.3e-50 7.2e-49 159.8 0.4 1 301 246 569 246 573 0.92 # 54876 # 56762 # 1 # ID=1_97;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.337 1_110 - 840 AAA_10 PF12846.2 304 8.2e-13 41.4 0.3 1 1 1.5e-14 8.2e-13 41.4 0.3 1 302 160 493 160 495 0.78 # 69096 # 71615 # 1 # ID=1_110;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_110 - 840 TrwB_AAD_bind PF10412.4 386 6.3e-30 97.0 0.0 1 1 3.8e-31 4.1e-29 94.3 0.0 7 382 152 543 146 546 0.77 # 69096 # 71615 # 1 # ID=1_110;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 1_60 - 403 Sigma54_activ_2 PF14532.1 138 0.0007 12.7 0.0 1 1 1.3e-05 0.0014 11.8 0.0 15 58 175 218 170 253 0.75 # 28390 # 29598 # -1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.317 1_110 - 840 T4SS-DNA_transf PF02534.9 469 2.8e-74 243.3 7.5 1 1 3e-76 3.3e-74 243.1 6.8 45 450 161 558 125 614 0.88 # 69096 # 71615 # 1 # ID=1_110;partial=01;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.330 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/aac022ae-4227-4c4c-a73d-15ace34a2924 # Target file: checkm_output/bins/pGCA_002005345.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002005345.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/aac022ae-4227-4c4c-a73d-15ace34a2924 checkm_output/bins/pGCA_002005345.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:58 2020 # [ok]