# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 407 Terminase_6 PF03237.10 384 1.6e-40 131.4 3.6 1 1 2.5e-42 1.8e-40 131.2 3.6 76 383 103 394 29 395 0.89 # 20226 # 21446 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.351 1_57 - 253 IstB_IS21 PF01695.12 178 1.1e-20 66.1 0.2 1 1 2.3e-22 1.6e-20 65.7 0.2 6 153 60 217 40 230 0.80 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 AAA_22 PF13401.1 131 0.00092 11.8 0.7 1 1 0.00013 0.0092 8.5 0.7 9 95 106 173 103 215 0.66 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_44 - 183 DNA_methylase PF00145.12 335 9.7e-53 171.7 0.0 1 1 1.7e-54 1.2e-52 171.5 0.0 2 166 4 176 3 181 0.92 # 26919 # 27467 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.410 1_57 - 253 AAA_17 PF13207.1 121 0.00016 14.9 0.7 1 1 4.6e-06 0.00032 13.9 0.1 5 78 107 208 104 249 0.49 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_61 - 511 AAA_21 PF13304.1 303 0.0004 12.7 11.0 1 2 1.1e-06 7.4e-05 15.2 5.1 2 72 27 84 26 271 0.73 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_61 - 511 AAA_21 PF13304.1 303 0.0004 12.7 11.0 2 2 0.082 5.8 -0.9 0.3 166 214 343 391 289 437 0.54 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_57 - 253 PhoH PF02562.11 205 0.00036 12.2 0.7 1 2 1.3e-05 0.00093 10.8 0.5 21 47 103 129 84 143 0.80 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 PhoH PF02562.11 205 0.00036 12.2 0.7 2 2 0.065 4.6 -1.2 0.0 58 70 163 183 125 210 0.52 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 Zeta_toxin PF06414.7 201 2.5e-05 15.8 0.0 1 1 6.6e-07 4.6e-05 14.9 0.0 20 47 105 133 102 169 0.87 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_61 - 511 SMC_N PF02463.14 220 1.1e-09 30.2 0.3 1 1 1.6e-11 1.1e-09 30.2 0.3 3 48 6 48 4 120 0.88 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_37 - 115 Phe_tRNA-synt_N PF02912.13 73 0.00018 13.7 5.2 1 1 1.8e-06 0.00012 14.2 3.3 9 67 48 106 40 110 0.90 # 23441 # 23785 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_57 - 253 AAA_16 PF13191.1 185 0.00039 12.8 0.0 1 1 8.6e-06 0.00061 12.2 0.0 27 81 104 166 89 211 0.72 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_61 - 511 AAA_23 PF13476.1 202 3.4e-10 32.9 56.4 1 1 5.7e-07 4e-05 16.4 56.4 2 168 8 257 7 462 0.57 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_57 - 253 Kinesin PF00225.18 335 6.8e-05 14.0 1.7 1 1 2.3e-06 0.00016 12.8 1.8 11 117 35 146 26 158 0.65 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 KaiC PF06745.8 227 5.5e-05 14.7 0.5 1 2 2.4e-06 0.00017 13.1 0.1 22 67 104 148 94 162 0.86 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 KaiC PF06745.8 227 5.5e-05 14.7 0.5 2 2 0.087 6.1 -1.8 0.0 114 159 164 212 153 223 0.67 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_61 - 511 AAA_29 PF13555.1 62 2.2e-08 26.0 0.1 1 1 9.9e-10 6.9e-08 24.4 0.0 18 49 20 50 9 57 0.83 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_57 - 253 AAA PF00004.24 132 1.7e-08 27.2 0.1 1 1 3.4e-10 2.4e-08 26.7 0.1 2 123 105 229 104 236 0.70 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 Bac_DnaA PF00308.13 219 1.7e-07 23.5 0.2 1 1 3.4e-09 2.4e-07 23.0 0.2 18 155 84 230 67 247 0.72 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 AAA_30 PF13604.1 196 0.00054 12.0 0.6 1 1 1.4e-05 0.00097 11.1 0.6 22 53 105 136 93 176 0.89 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_61 - 511 MukB PF04310.7 227 0.00017 13.3 1.4 1 2 0.00034 0.024 6.3 0.0 29 46 26 43 4 51 0.82 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_61 - 511 MukB PF04310.7 227 0.00017 13.3 1.4 2 2 0.00095 0.066 4.9 0.2 112 212 338 444 324 451 0.78 # 33579 # 35111 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.351 1_57 - 253 AAA_19 PF13245.1 76 8.7e-05 14.7 0.5 1 1 2.5e-06 0.00017 13.7 0.5 16 49 107 136 97 185 0.86 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_58 - 250 NusA_N PF08529.6 122 9.6e-05 14.8 0.3 1 2 0.0047 0.33 3.4 0.0 10 33 54 80 49 101 0.72 # 31726 # 32475 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_58 - 250 NusA_N PF08529.6 122 9.6e-05 14.8 0.3 2 2 8e-05 0.0056 9.1 0.1 13 38 170 195 161 234 0.75 # 31726 # 32475 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.377 1_57 - 253 ResIII PF04851.10 184 3.1e-05 16.3 0.1 1 2 0.037 2.6 0.2 2.1 64 106 40 82 27 96 0.63 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 ResIII PF04851.10 184 3.1e-05 16.3 0.1 2 2 4.4e-07 3.1e-05 16.3 0.1 30 76 106 150 99 173 0.82 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 TIP49 PF06068.8 398 0.0002 12.5 0.1 1 1 4.1e-06 0.00029 12.0 0.1 42 83 91 137 83 168 0.72 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 RNA_helicase PF00910.17 107 1.3e-05 17.8 0.1 1 1 2.7e-06 0.00019 14.0 0.0 3 62 106 178 104 196 0.73 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_57 - 253 UPF0079 PF02367.12 123 0.00023 13.2 0.1 1 1 6.1e-06 0.00043 12.4 0.1 3 42 87 129 85 140 0.81 # 30984 # 31742 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.401 1_13 - 249 Lambda_tail_I PF06805.7 82 0.00047 12.4 0.0 1 2 7.4e-05 0.0051 9.1 0.0 14 65 20 66 15 74 0.84 # 7496 # 8242 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_13 - 249 Lambda_tail_I PF06805.7 82 0.00047 12.4 0.0 2 2 0.012 0.82 2.0 0.0 4 44 67 106 65 129 0.77 # 7496 # 8242 # -1 # ID=1_13;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.378 1_65 - 114 ABC_tran_2 PF12848.2 85 0.00018 13.8 3.4 1 2 0.077 5.4 -0.6 0.0 13 28 28 43 17 51 0.76 # 36768 # 37109 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_65 - 114 ABC_tran_2 PF12848.2 85 0.00018 13.8 3.4 2 2 1.2e-05 0.00083 11.6 1.7 7 57 47 95 41 113 0.83 # 36768 # 37109 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d95f1183-421d-4903-b520-7bdb8af29ad3 # Target file: checkm_output/bins/pGCA_002000005.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_002000005.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d95f1183-421d-4903-b520-7bdb8af29ad3 checkm_output/bins/pGCA_002000005.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:46 2020 # [ok]