# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 211 MipZ PF09140.6 261 8.7e-14 41.8 2.4 1 2 6.2e-11 1.3e-09 28.2 0.1 2 40 3 41 2 53 0.90 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 MipZ PF09140.6 261 8.7e-14 41.8 2.4 2 2 1.5e-06 3.1e-05 13.8 0.3 87 135 65 113 46 157 0.79 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 YhjQ PF06564.7 244 1.1e-06 18.9 1.7 1 2 9.2e-08 1.9e-06 18.0 0.1 1 41 1 41 1 45 0.94 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 YhjQ PF06564.7 244 1.1e-06 18.9 1.7 2 2 0.067 1.4 -1.2 0.0 116 149 75 108 61 113 0.80 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 UvrD_C_2 PF13538.1 104 1.7e-14 44.6 0.2 1 1 7.8e-15 1.6e-13 41.4 0.1 2 103 548 645 547 646 0.76 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_11 - 303 AAA_22 PF13401.1 131 1e-17 55.2 0.0 1 1 1.6e-18 1.7e-17 54.5 0.0 7 127 64 191 59 195 0.94 # 9928 # 10836 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_1 - 1028 AAA_22 PF13401.1 131 1.7e-08 25.4 0.2 1 1 8.2e-09 8.6e-08 23.1 0.1 5 126 312 421 308 425 0.85 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_9 - 371 DNA_methylase PF00145.12 335 7.6e-47 150.6 0.0 1 1 4.3e-48 9e-47 150.4 0.0 22 334 10 355 1 356 0.77 # 6662 # 7774 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.680 1_20 - 211 SRP54 PF00448.17 196 1.1e-05 15.6 0.2 1 1 1.3e-06 2.8e-05 14.3 0.2 10 39 11 40 2 90 0.89 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 AAA_17 PF13207.1 121 4.3e-08 24.8 0.0 1 1 2.9e-09 6.1e-08 24.3 0.0 9 78 12 93 11 171 0.66 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 MobB PF03205.9 140 5.4e-06 16.9 0.0 1 1 6.5e-07 1.4e-05 15.6 0.0 10 112 12 96 2 109 0.72 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 LpxK PF02606.9 326 1.3e-05 15.0 0.1 1 2 1.5e-06 3.1e-05 13.7 0.1 36 96 2 60 1 105 0.75 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 LpxK PF02606.9 326 1.3e-05 15.0 0.1 2 2 0.028 0.59 -0.4 0.0 143 155 73 85 67 138 0.66 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 ArsA_ATPase PF02374.10 305 1.8e-07 21.1 0.2 1 1 1.6e-08 3.3e-07 20.2 0.1 6 46 7 47 1 66 0.86 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 PhoH PF02562.11 205 9.6e-06 15.6 0.2 1 2 1.7e-05 0.00035 10.5 0.0 7 43 299 334 295 342 0.71 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 PhoH PF02562.11 205 9.6e-06 15.6 0.2 2 2 0.0048 0.1 2.5 0.0 121 161 384 425 376 457 0.77 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 SKI PF01202.17 158 9.1e-05 13.1 0.1 1 1 7.5e-06 0.00016 12.3 0.1 2 22 12 32 11 38 0.91 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 Methyltransf_24 PF13578.1 106 4.3e-06 18.3 0.1 1 1 5.3e-07 1.1e-05 17.0 0.1 7 83 13 90 11 102 0.75 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 VirC1 PF07015.6 231 2.7e-08 23.8 0.0 1 1 2.1e-09 4.5e-08 23.1 0.0 1 180 1 173 1 208 0.79 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 Fer4_NifH PF00142.13 273 2.3e-05 14.4 0.1 1 2 7.5e-06 0.00016 11.6 0.0 6 40 8 42 2 50 0.88 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 Fer4_NifH PF00142.13 273 2.3e-05 14.4 0.1 2 2 0.029 0.62 -0.2 0.0 221 247 181 207 122 209 0.81 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 AAA_16 PF13191.1 185 2.3e-06 18.4 0.1 1 2 1.9e-05 0.00014 12.6 0.0 34 70 12 49 10 67 0.87 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 AAA_16 PF13191.1 185 2.3e-06 18.4 0.1 2 2 0.0085 0.06 4.0 0.1 52 119 97 168 84 209 0.72 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_11 - 303 AAA_16 PF13191.1 185 6.4e-06 16.9 0.0 1 2 9.8e-05 0.00068 10.3 0.0 8 46 45 83 43 101 0.88 # 9928 # 10836 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_11 - 303 AAA_16 PF13191.1 185 6.4e-06 16.9 0.0 2 2 0.012 0.087 3.5 0.0 139 183 134 184 113 186 0.72 # 9928 # 10836 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_1 - 1028 AAA_16 PF13191.1 185 3.1e-05 14.7 5.1 1 1 1.1e-05 8e-05 13.4 2.3 10 82 302 365 298 556 0.82 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 AAA_18 PF13238.1 129 0.00011 13.2 0.0 1 1 8.5e-06 0.00018 12.6 0.0 8 23 12 32 10 133 0.82 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_7 - 138 adh_short PF00106.20 167 7.5e-05 13.4 0.1 1 1 5.1e-06 0.00011 12.9 0.1 37 77 94 134 84 137 0.81 # 5320 # 5733 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 1_20 - 211 CbiA PF01656.18 195 2.2e-32 102.7 0.6 1 1 1.9e-33 3.9e-32 101.9 0.6 1 156 4 141 4 175 0.75 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 AAA PF00004.24 132 8.2e-05 13.5 0.0 1 1 9.9e-06 0.00021 12.2 0.0 2 74 315 398 314 417 0.80 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_11 - 303 TniB PF05621.6 302 1.6e-213 697.4 5.5 1 1 8.5e-215 1.8e-213 697.3 5.5 1 302 1 302 1 302 1.00 # 9928 # 10836 # 1 # ID=1_11;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.662 1_20 - 211 AAA_31 PF13614.1 157 1.6e-11 35.0 0.1 1 2 7.5e-11 1.6e-09 28.6 0.0 1 41 2 42 2 46 0.93 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 AAA_31 PF13614.1 157 1.6e-11 35.0 0.1 2 2 0.002 0.041 4.5 0.0 116 154 75 112 68 115 0.83 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 KTI12 PF08433.5 270 4e-05 13.6 0.0 1 1 2.9e-06 6.1e-05 13.0 0.0 11 44 12 45 6 85 0.78 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 AAA_30 PF13604.1 196 1.1e-66 214.8 12.7 1 1 5.3e-68 1.1e-66 214.8 12.7 1 193 295 481 295 484 0.96 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 AAA_19 PF13245.1 76 8.7e-08 22.6 2.8 1 1 1.3e-08 1.4e-07 22.0 0.3 2 75 303 369 302 370 0.85 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 AAA_19 PF13245.1 76 6.5e-05 13.4 1.2 1 1 1.4e-05 0.00015 12.3 0.1 20 51 12 41 4 60 0.79 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 Helicase_RecD PF05127.9 177 2.7e-05 14.5 0.1 1 1 3e-05 0.00064 10.1 0.1 73 114 368 406 315 412 0.58 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 AAA_10 PF12846.2 304 3.1e-05 14.2 0.0 1 1 1.8e-06 3.8e-05 13.9 0.0 11 51 12 54 10 96 0.89 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_20 - 211 adh_short_C2 PF13561.1 241 5.4e-05 13.7 0.0 1 1 3.3e-06 6.9e-05 13.4 0.0 5 67 15 78 11 156 0.87 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 Viral_helicase1 PF01443.13 234 7.2e-10 29.4 0.1 1 2 5.6e-06 0.00012 12.4 0.0 2 104 315 426 314 468 0.63 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 Viral_helicase1 PF01443.13 234 7.2e-10 29.4 0.1 2 2 1.1e-06 2.3e-05 14.7 0.0 172 232 594 645 559 647 0.81 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 AAA_11 PF13086.1 236 2.3e-09 27.8 0.1 1 2 0.00037 0.0077 6.5 0.0 2 32 296 326 295 355 0.84 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 AAA_11 PF13086.1 236 2.3e-09 27.8 0.1 2 2 9.2e-08 1.9e-06 18.2 0.1 192 232 382 425 358 426 0.75 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 PIF1 PF05970.9 364 4.7e-07 19.7 1.4 1 1 3.4e-08 7.1e-07 19.1 0.4 2 154 296 423 295 438 0.80 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 AAA_24 PF13479.1 213 2.3e-06 18.0 0.1 1 1 1.8e-07 3.7e-06 17.3 0.1 11 89 10 97 2 102 0.79 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 AAA_25 PF13481.1 194 9.6e-06 15.8 0.8 1 2 0.077 0.81 -0.3 0.0 161 189 36 64 25 69 0.72 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 AAA_25 PF13481.1 194 9.6e-06 15.8 0.8 2 2 1.3e-05 0.00013 12.1 0.0 20 50 298 328 284 336 0.85 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 AAA_25 PF13481.1 194 9.7e-05 12.5 2.4 1 1 0.00019 0.002 8.2 2.4 41 159 10 93 2 106 0.60 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 1_1 - 1028 Herpes_Helicase PF02689.9 819 3.6e-07 18.9 0.1 1 3 0.017 0.36 -1.0 0.0 59 81 310 332 294 336 0.75 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 Herpes_Helicase PF02689.9 819 3.6e-07 18.9 0.1 2 3 4.3e-05 0.0009 7.6 0.0 174 212 361 399 346 403 0.85 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_1 - 1028 Herpes_Helicase PF02689.9 819 3.6e-07 18.9 0.1 3 3 4.6e-05 0.00098 7.5 0.0 742 785 604 645 584 655 0.86 # 2 # 3085 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.694 1_20 - 211 APS_kinase PF01583.15 157 3.4e-05 14.2 0.0 1 1 2.9e-06 6e-05 13.4 0.0 10 39 10 39 2 77 0.89 # 16302 # 16934 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.648 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/26996f9b-4501-48b3-aa68-7cff98dfb7b2 # Target file: checkm_output/bins/pGCA_001999885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001999885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/26996f9b-4501-48b3-aa68-7cff98dfb7b2 checkm_output/bins/pGCA_001999885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:45 2020 # [ok]