# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_96 - 287 ATP_bind_3 PF01171.15 182 9.1e-09 28.2 0.0 1 2 1.1e-06 0.00013 14.6 0.0 2 24 34 56 33 69 0.88 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_96 - 287 ATP_bind_3 PF01171.15 182 9.1e-09 28.2 0.0 2 2 1.1e-05 0.0013 11.3 0.0 128 165 146 183 129 187 0.82 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_69 - 1661 UPF0020 PF01170.13 180 9.3e-05 15.2 0.0 1 1 2.2e-06 0.00026 13.7 0.0 30 119 214 289 207 343 0.72 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_102 - 137 SSB PF00436.20 104 1.4e-33 108.1 0.1 1 1 2.9e-35 1.7e-33 107.8 0.1 1 104 1 99 1 99 0.97 # 99041 # 99451 # -1 # ID=1_102;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.307 1_62 - 152 SSB PF00436.20 104 4.6e-16 51.8 0.4 1 1 1.1e-17 6.7e-16 51.3 0.4 1 90 1 85 1 97 0.91 # 61554 # 62009 # -1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.252 1_69 - 1661 Methyltransf_18 PF12847.2 112 6.9e-05 16.6 0.0 1 1 4.7e-06 0.00055 13.7 0.0 2 78 213 284 212 329 0.69 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_58 - 72 UvrD_C_2 PF13538.1 104 1.5e-07 24.8 0.0 1 1 1.5e-09 1.8e-07 24.5 0.0 79 103 16 39 3 40 0.85 # 57893 # 58108 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_37 - 882 DUF87 PF01935.12 229 1.4e-06 21.4 0.1 1 2 0.027 1.6 1.6 1.7 133 196 351 427 305 453 0.64 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_37 - 882 DUF87 PF01935.12 229 1.4e-06 21.4 0.1 2 2 2.3e-08 1.4e-06 21.4 0.1 28 101 528 594 524 680 0.86 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_22 - 307 DUF87 PF01935.12 229 4.2e-05 16.6 1.1 1 1 1.3e-06 7.6e-05 15.7 1.1 3 171 31 194 29 247 0.66 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_63 - 474 AAA_22 PF13401.1 131 6.3e-08 26.0 0.5 1 1 1.8e-08 7e-07 22.6 0.0 6 113 36 139 32 157 0.69 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_59 - 469 AAA_22 PF13401.1 131 0.00013 15.2 0.2 1 1 0.00023 0.0091 9.3 0.2 88 124 179 223 17 226 0.51 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_66 - 658 AAA_22 PF13401.1 131 0.01 9.1 8.2 1 3 0.00064 0.025 7.9 0.0 7 24 24 41 19 66 0.90 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_66 - 658 AAA_22 PF13401.1 131 0.01 9.1 8.2 2 3 0.056 2.2 1.6 0.1 39 100 121 187 100 213 0.75 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_66 - 658 AAA_22 PF13401.1 131 0.01 9.1 8.2 3 3 0.071 2.8 1.2 0.1 81 123 594 639 552 644 0.71 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_69 - 1661 Methyltransf_11 PF08241.7 95 1.1e-07 25.4 0.0 1 1 4.3e-09 5.1e-07 23.3 0.0 1 67 217 283 217 298 0.94 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_119 - 41 Ribosomal_S10 PF00338.17 97 8.5e-06 18.8 0.0 1 1 7.1e-08 8.5e-06 18.8 0.0 11 46 2 37 1 40 0.92 # 120252 # 120374 # 1 # ID=1_119;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_63 - 474 DNA_pol3_delta2 PF13177.1 162 4.5e-49 159.4 6.7 1 2 7.4e-51 8.9e-49 158.4 0.1 7 161 22 173 16 174 0.95 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 DNA_pol3_delta2 PF13177.1 162 4.5e-49 159.4 6.7 2 2 0.0017 0.2 4.4 0.3 6 100 213 332 209 350 0.71 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_17 PF13207.1 121 1.6e-05 18.9 0.2 1 1 1.3e-06 7.8e-05 16.7 0.1 3 33 38 76 37 255 0.73 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_37 - 882 AAA_17 PF13207.1 121 0.00088 13.3 0.0 1 2 0.091 5.4 1.0 0.0 13 65 353 402 353 490 0.56 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_37 - 882 AAA_17 PF13207.1 121 0.00088 13.3 0.0 2 2 1.5e-05 0.00088 13.3 0.0 4 32 528 579 526 629 0.76 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_69 - 1661 Helicase_C PF00271.26 78 2.2e-10 33.5 0.0 1 1 6.9e-12 8.2e-10 31.7 0.0 10 78 1324 1394 1318 1394 0.92 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_59 - 469 PhoH PF02562.11 205 0.00032 13.1 0.0 1 2 0.0068 0.81 2.0 0.0 6 34 10 36 6 75 0.69 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_59 - 469 PhoH PF02562.11 205 0.00032 13.1 0.0 2 2 8.5e-05 0.01 8.2 0.0 122 158 189 227 186 240 0.85 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_66 - 658 SMC_N PF02463.14 220 9.6e-08 24.6 0.3 1 1 8.1e-10 9.6e-08 24.6 0.3 1 47 1 44 1 76 0.88 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_49 - 356 DUF1866 PF08952.6 146 0.00059 12.5 3.1 1 2 0.012 1.4 1.6 0.0 79 123 62 107 56 124 0.74 # 46999 # 48066 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.275 1_49 - 356 DUF1866 PF08952.6 146 0.00059 12.5 3.1 2 2 2.9e-05 0.0034 10.1 0.3 52 141 191 281 181 284 0.85 # 46999 # 48066 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.275 1_96 - 287 TIGR02432 TIGR02432 189 2.4e-09 30.2 0.0 1 2 1.1e-06 0.00013 14.8 0.0 3 22 35 54 33 62 0.86 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_96 - 287 TIGR02432 TIGR02432 189 2.4e-09 30.2 0.0 2 2 3.4e-06 0.0004 13.2 0.0 130 169 145 183 131 186 0.78 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_96 - 287 QueC PF06508.8 210 0.00011 14.7 0.1 1 3 0.00041 0.049 6.0 0.0 1 23 33 55 33 62 0.84 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_96 - 287 QueC PF06508.8 210 0.00011 14.7 0.1 2 3 0.00087 0.1 5.0 0.0 154 197 158 198 142 206 0.78 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_96 - 287 QueC PF06508.8 210 0.00011 14.7 0.1 3 3 0.032 3.8 -0.2 0.0 123 145 205 227 199 235 0.86 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_66 - 658 AAA_16 PF13191.1 185 7.2e-06 19.2 0.5 1 2 2.4e-05 0.0014 11.7 0.0 22 49 19 46 3 61 0.81 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_66 - 658 AAA_16 PF13191.1 185 7.2e-06 19.2 0.5 2 2 0.0086 0.51 3.4 0.1 138 178 588 629 567 638 0.79 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_63 - 474 AAA_16 PF13191.1 185 0.0006 13.0 0.0 1 1 3.8e-05 0.0023 11.1 0.0 23 51 33 61 22 144 0.84 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_66 - 658 AAA_23 PF13476.1 202 1.1e-08 28.8 36.5 1 1 9.1e-11 1.1e-08 28.8 36.5 1 202 4 289 4 289 0.55 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_63 - 474 AAA_18 PF13238.1 129 4.1e-06 20.3 0.4 1 1 4e-07 2.4e-05 17.8 0.0 3 96 39 146 38 159 0.84 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_37 - 882 AAA_18 PF13238.1 129 0.00033 14.1 0.0 1 1 5.5e-06 0.00033 14.1 0.0 2 38 527 562 527 658 0.81 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_75 - 243 GFO_IDH_MocA PF01408.17 120 0.00019 15.1 0.0 1 2 0.0047 0.56 3.9 0.0 1 22 4 25 4 68 0.80 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_75 - 243 GFO_IDH_MocA PF01408.17 120 0.00019 15.1 0.0 2 2 0.00012 0.014 9.1 0.0 54 117 120 183 76 187 0.77 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_63 - 474 AAA_14 PF13173.1 128 3.2e-07 23.5 1.5 1 2 4.4e-08 5.2e-06 19.6 0.0 6 106 38 161 34 170 0.65 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_14 PF13173.1 128 3.2e-07 23.5 1.5 2 2 0.02 2.3 1.3 0.2 54 74 310 330 254 370 0.66 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_66 - 658 AAA_29 PF13555.1 62 3.4e-05 16.5 0.0 1 1 1.7e-06 0.0001 15.0 0.0 24 44 22 42 4 47 0.79 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_37 - 882 AAA_29 PF13555.1 62 0.0004 13.1 0.0 1 1 2.5e-05 0.0015 11.3 0.0 24 40 524 540 514 547 0.82 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_63 - 474 AAA PF00004.24 132 6.1e-12 39.0 1.2 1 1 6.4e-13 3.8e-11 36.5 0.0 2 126 38 167 37 172 0.80 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_66 - 658 AAA PF00004.24 132 0.038 7.4 8.4 1 2 0.0003 0.018 8.4 0.0 1 35 24 60 24 156 0.72 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_66 - 658 AAA PF00004.24 132 0.038 7.4 8.4 2 2 0.025 1.5 2.2 0.1 74 111 599 643 540 650 0.68 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_58 - 72 UvrD_C PF13361.1 351 4.4e-12 39.2 0.0 1 1 8.5e-14 5e-12 39.0 0.0 306 349 2 42 1 44 0.86 # 57893 # 58108 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_59 - 469 UvrD_C PF13361.1 351 1.8e-09 30.6 17.5 1 1 3e-11 1.8e-09 30.6 17.5 1 220 251 448 251 465 0.73 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_96 - 287 PAPS_reduct PF01507.14 174 7e-28 90.7 0.0 1 1 1.3e-29 1.5e-27 89.6 0.0 3 172 35 198 33 200 0.84 # 95705 # 96565 # -1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.322 1_37 - 882 MMR_HSR1 PF01926.18 116 0.0004 13.5 0.1 1 1 1.5e-05 0.0018 11.4 0.1 2 22 526 546 525 600 0.82 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_27 - 810 TraG-D_C PF12696.2 128 5.7e-39 126.1 0.0 1 1 4.1e-40 2.4e-38 124.0 0.0 1 127 432 553 432 554 0.90 # 19251 # 21680 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_22 - 307 TraG-D_C PF12696.2 128 2.5e-14 46.4 0.3 1 1 1.2e-15 7.1e-14 44.9 0.1 2 78 193 265 192 277 0.92 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_37 - 882 AAA_33 PF13671.1 143 0.00092 12.3 0.0 1 1 2.2e-05 0.0026 10.8 0.0 3 20 527 544 526 570 0.84 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_69 - 1661 Methyltransf_26 PF13659.1 117 3.7e-17 55.6 0.0 1 1 6.6e-19 7.9e-17 54.6 0.0 2 116 214 329 213 330 0.95 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_3 - 327 RNA_pol_Rpb1_3 PF04983.13 158 0.0013 11.6 4.0 1 1 0.00027 0.032 7.1 3.6 35 120 201 311 96 322 0.73 # 820 # 1800 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.211 1_59 - 469 AAA_30 PF13604.1 196 1.1e-08 28.0 0.0 1 2 1.2e-07 6.9e-06 18.9 0.0 1 65 8 71 8 78 0.80 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_59 - 469 AAA_30 PF13604.1 196 1.1e-08 28.0 0.0 2 2 0.00062 0.037 6.7 0.0 94 178 187 276 170 295 0.72 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_63 - 474 AAA_30 PF13604.1 196 1.2e-06 21.3 0.0 1 1 1.1e-07 6.4e-06 19.0 0.0 22 119 38 140 27 169 0.76 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_37 - 882 FtsK_SpoIIIE PF01580.13 205 4.5e-06 19.4 0.0 1 1 9.7e-08 1.2e-05 18.1 0.0 33 59 518 544 499 549 0.87 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_69 - 1661 MTS PF05175.9 170 0.00012 14.6 0.0 1 1 3.9e-06 0.00047 12.7 0.0 22 110 201 288 199 302 0.83 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_37 - 882 ABC_tran PF00005.22 137 0.0002 14.8 0.0 1 1 1.7e-06 0.0002 14.8 0.0 9 34 521 546 517 561 0.89 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_63 - 474 RuvB_N PF05496.7 234 2.4e-05 16.6 0.0 1 2 1.7e-06 0.0002 13.6 0.0 17 84 5 68 2 93 0.81 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 RuvB_N PF05496.7 234 2.4e-05 16.6 0.0 2 2 0.031 3.7 -0.4 0.0 101 126 114 139 66 142 0.76 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_59 - 469 AAA_19 PF13245.1 76 2.4e-11 36.5 0.0 1 1 4.3e-13 5.1e-11 35.4 0.0 2 74 16 90 14 92 0.81 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_37 - 882 AAA_10 PF12846.2 304 5.3e-49 160.4 0.0 1 1 2.4e-50 9.5e-49 159.5 0.0 1 303 523 842 523 843 0.88 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_27 - 810 AAA_10 PF12846.2 304 5e-10 32.4 0.1 1 1 6.4e-11 2.5e-09 30.1 0.1 1 299 177 510 177 512 0.67 # 19251 # 21680 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_63 - 474 AAA_10 PF12846.2 304 7.8e-09 28.5 0.0 1 3 0.029 1.2 1.6 0.0 5 29 38 62 34 84 0.76 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_10 PF12846.2 304 7.8e-09 28.5 0.0 2 3 1.7e-08 6.9e-07 22.1 0.0 207 289 102 175 100 188 0.87 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_10 PF12846.2 304 7.8e-09 28.5 0.0 3 3 0.065 2.6 0.5 0.0 126 144 288 332 188 366 0.54 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_58 - 72 AAA_12 PF13087.1 200 0.00013 14.6 0.0 1 1 1.2e-06 0.00014 14.4 0.0 172 197 15 41 1 44 0.66 # 57893 # 58108 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_75 - 243 ThiF PF00899.16 136 5.1e-18 58.4 1.2 1 1 5.9e-20 7e-18 57.9 0.9 3 116 4 127 2 148 0.83 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_69 - 1661 ResIII PF04851.10 184 2.9e-10 33.4 0.3 1 1 2.4e-12 2.9e-10 33.4 0.3 2 162 858 1068 857 1115 0.77 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_69 - 1661 Methyltransf_31 PF13847.1 152 8.7e-10 31.5 0.4 1 3 0.056 6.7 -0.6 0.1 66 103 93 139 66 184 0.67 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_69 - 1661 Methyltransf_31 PF13847.1 152 8.7e-10 31.5 0.4 2 3 7.3e-12 8.7e-10 31.5 0.4 4 123 213 342 211 386 0.73 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_69 - 1661 Methyltransf_31 PF13847.1 152 8.7e-10 31.5 0.4 3 3 0.045 5.4 -0.3 0.2 54 103 1505 1551 1460 1569 0.77 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_58 - 72 Viral_helicase1 PF01443.13 234 1.1e-05 18.2 0.1 1 1 2.6e-07 1.5e-05 17.7 0.1 202 233 11 40 4 41 0.78 # 57893 # 58108 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.292 1_59 - 469 Viral_helicase1 PF01443.13 234 0.00029 13.5 0.8 1 3 0.0015 0.09 5.4 0.1 1 21 24 44 24 55 0.81 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_59 - 469 Viral_helicase1 PF01443.13 234 0.00029 13.5 0.8 2 3 0.0026 0.16 4.6 0.0 164 199 51 86 43 96 0.84 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_59 - 469 Viral_helicase1 PF01443.13 234 0.00029 13.5 0.8 3 3 0.051 3 0.4 0.0 64 104 188 231 178 330 0.60 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_63 - 474 DUF2075 PF09848.4 352 2.2e-05 16.7 0.0 1 1 3.6e-07 4.3e-05 15.7 0.0 4 111 37 134 34 206 0.79 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_22 - 307 DEAD PF00270.24 169 0.00015 14.5 0.0 1 1 2.4e-06 0.00029 13.5 0.0 14 70 51 106 36 146 0.73 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_63 - 474 DUF815 PF05673.8 250 3e-05 16.2 1.6 1 2 3.8e-06 0.00046 12.3 0.1 45 104 26 106 9 138 0.79 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 DUF815 PF05673.8 250 3e-05 16.2 1.6 2 2 0.0039 0.47 2.4 0.2 122 164 409 455 351 469 0.76 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_27 - 810 TrwB_AAD_bind PF10412.4 386 1.6e-35 115.5 0.0 1 1 9.4e-37 3.7e-35 114.3 0.0 10 381 172 568 165 573 0.80 # 19251 # 21680 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_22 - 307 TrwB_AAD_bind PF10412.4 386 7.8e-12 37.6 0.0 1 2 2.1e-05 0.00083 11.1 0.0 11 60 47 97 39 112 0.77 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_22 - 307 TrwB_AAD_bind PF10412.4 386 7.8e-12 37.6 0.0 2 2 1.7e-09 6.6e-08 24.6 0.0 220 327 171 271 128 301 0.77 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_37 - 882 TrwB_AAD_bind PF10412.4 386 1.4e-06 20.2 0.0 1 2 5.4e-05 0.0021 9.8 0.0 16 56 524 564 517 572 0.91 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_37 - 882 TrwB_AAD_bind PF10412.4 386 1.4e-06 20.2 0.0 2 2 0.00031 0.012 7.3 0.0 258 323 778 839 774 855 0.80 # 37658 # 40303 # -1 # ID=1_37;partial=00;start_type=TTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.273 1_63 - 474 Sigma54_activ_2 PF14532.1 138 0.0009 12.5 0.0 1 1 0.00013 0.015 8.5 0.0 27 109 40 154 16 161 0.70 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_27 - 810 T4SS-DNA_transf PF02534.9 469 4.3e-62 203.3 0.2 1 1 1.2e-63 7.3e-62 202.5 0.2 35 450 173 578 134 602 0.83 # 19251 # 21680 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.281 1_22 - 307 T4SS-DNA_transf PF02534.9 469 8.7e-18 57.2 1.0 1 2 3.4e-10 2e-08 26.3 0.2 16 165 26 179 4 182 0.58 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_22 - 307 T4SS-DNA_transf PF02534.9 469 8.7e-18 57.2 1.0 2 2 9.6e-12 5.7e-10 31.4 0.4 249 379 136 262 115 266 0.78 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_91 - 165 MethyltransfD12 PF02086.10 260 0.00034 13.2 9.0 1 1 1.6e-05 0.0019 10.8 9.0 35 75 52 103 45 152 0.80 # 92910 # 93404 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.206 1_69 - 1661 Methyltransf_23 PF13489.1 161 4.2e-06 19.7 0.0 1 1 1.2e-07 1.5e-05 17.9 0.0 11 83 204 281 195 316 0.79 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_66 - 658 RNA_helicase PF00910.17 107 0.0075 9.6 7.5 1 2 7.5e-05 0.009 9.4 0.0 1 27 24 53 24 116 0.77 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_66 - 658 RNA_helicase PF00910.17 107 0.0075 9.6 7.5 2 2 0.024 2.9 1.3 0.1 37 80 401 446 381 457 0.73 # 65898 # 67871 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.236 1_75 - 243 TrkA_N PF02254.13 116 6.1e-05 16.2 0.8 1 2 2.4e-06 0.00028 14.0 0.6 1 53 6 62 6 133 0.72 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_75 - 243 TrkA_N PF02254.13 116 6.1e-05 16.2 0.8 2 2 0.088 10 -0.7 0.0 3 31 147 175 146 215 0.71 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 1_26 - 272 S1 PF00575.18 74 2.8e-07 23.7 4.2 1 3 0.0013 0.16 5.3 0.0 47 74 76 103 46 103 0.83 # 18413 # 19228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 272 S1 PF00575.18 74 2.8e-07 23.7 4.2 2 3 2.7e-05 0.0032 10.8 0.1 3 74 117 187 116 187 0.93 # 18413 # 19228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_26 - 272 S1 PF00575.18 74 2.8e-07 23.7 4.2 3 3 0.00033 0.04 7.2 0.5 42 71 236 265 205 268 0.86 # 18413 # 19228 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.298 1_59 - 469 UvrD-helicase PF00580.16 315 7.1e-48 156.6 6.3 1 2 1.7e-28 1e-26 87.1 0.2 1 109 9 100 9 106 0.95 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_59 - 469 UvrD-helicase PF00580.16 315 7.1e-48 156.6 6.3 2 2 2.5e-26 1.5e-24 80.0 1.7 181 315 115 247 104 247 0.85 # 58193 # 59599 # -1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.246 1_22 - 307 UvrD-helicase PF00580.16 315 6.9e-05 15.4 2.1 1 2 2.7e-06 0.00016 14.2 0.3 11 68 49 111 39 140 0.66 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_22 - 307 UvrD-helicase PF00580.16 315 6.9e-05 15.4 2.1 2 2 0.015 0.89 1.9 0.3 168 241 126 247 81 286 0.58 # 15875 # 16795 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.241 1_69 - 1661 SNF2_N PF00176.18 299 4.6e-08 25.3 0.8 1 1 4.7e-09 2.8e-07 22.7 0.0 25 202 875 1146 859 1159 0.72 # 70111 # 75093 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.265 1_63 - 474 SNF2_N PF00176.18 299 0.0003 12.7 0.1 1 1 1.3e-05 0.00076 11.4 0.0 133 159 113 139 94 259 0.84 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_5 PF07728.9 139 1.4e-05 18.0 0.0 1 2 8.4e-05 0.01 8.8 0.0 3 26 38 61 36 65 0.89 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_63 - 474 AAA_5 PF07728.9 139 1.4e-05 18.0 0.0 2 2 0.00087 0.1 5.5 0.0 65 91 114 140 92 144 0.86 # 62062 # 63483 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_75 - 243 APS_kinase PF01583.15 157 0.00077 12.3 0.0 1 1 1.1e-05 0.0013 11.6 0.0 4 61 5 63 2 78 0.87 # 79258 # 79986 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.280 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a8926a56-e4d5-42db-af1c-4136abff4580 # Target file: checkm_output/bins/pGCA_001991075.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001991075.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a8926a56-e4d5-42db-af1c-4136abff4580 checkm_output/bins/pGCA_001991075.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:46 2020 # [ok]