# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 272 cobW PF02492.14 178 0.00042 11.7 0.2 1 1 2e-05 0.00096 10.5 0.1 126 171 102 156 63 162 0.72 # 6722 # 7537 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 IstB_IS21 PF01695.12 178 1.9e-05 16.0 1.2 1 2 5.7e-06 0.00027 12.2 0.1 45 70 29 55 11 83 0.82 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 IstB_IS21 PF01695.12 178 1.9e-05 16.0 1.2 2 2 0.0079 0.38 2.0 0.0 102 152 150 203 121 211 0.68 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 272 AAA_22 PF13401.1 131 5.4e-28 89.6 0.0 1 1 3.9e-29 9.3e-28 88.9 0.0 2 131 25 171 24 171 0.87 # 6722 # 7537 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_22 PF13401.1 131 1.9e-05 16.7 1.3 1 1 8.8e-06 0.00021 13.3 1.3 4 23 31 50 27 206 0.81 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 ATP_bind_1 PF03029.12 238 0.00076 10.9 2.5 1 2 8.2e-05 0.0039 8.5 0.1 1 14 36 49 36 66 0.87 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 ATP_bind_1 PF03029.12 238 0.00076 10.9 2.5 2 2 0.0076 0.36 2.1 0.4 157 205 95 140 69 213 0.66 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 Methyltransf_11 PF08241.7 95 0.00042 12.7 0.0 1 1 1.8e-05 0.00088 11.7 0.0 4 66 175 241 173 264 0.87 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 AAA_15 PF13175.1 415 8.1e-11 33.3 1.1 1 2 1.8e-05 0.00085 10.2 0.1 13 78 22 116 3 145 0.74 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_15 PF13175.1 415 8.1e-11 33.3 1.1 2 2 3.8e-09 1.8e-07 22.3 0.1 366 413 152 201 143 203 0.83 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_17 - 225 AAA_17 PF13207.1 121 2.1e-06 20.5 1.0 1 1 1.3e-07 3.1e-06 19.9 1.0 23 113 24 122 21 204 0.85 # 14740 # 15414 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.347 1_34 - 221 AAA_17 PF13207.1 121 5.7e-06 19.1 0.9 1 1 4e-07 9.5e-06 18.4 0.8 1 17 33 49 33 142 0.88 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_21 PF13304.1 303 8.2e-19 60.4 0.2 1 1 1.2e-18 5.7e-17 54.4 0.2 2 301 34 202 33 204 0.76 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 Miro PF08477.8 119 0.00016 14.1 0.2 1 1 9.8e-06 0.00047 12.6 0.1 2 70 34 114 33 127 0.66 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 MobB PF03205.9 140 0.00012 13.6 0.4 1 1 6.4e-06 0.00031 12.4 0.1 2 18 33 49 32 54 0.89 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 ADH_zinc_N PF00107.21 130 4.5e-27 86.1 0.0 1 1 1.5e-28 7.4e-27 85.4 0.0 1 121 178 297 178 300 0.96 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 PhoH PF02562.11 205 1.4e-05 16.2 0.1 1 1 5e-07 2.4e-05 15.5 0.1 17 59 29 70 14 126 0.79 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 SMC_N PF02463.14 220 5.3e-12 37.3 4.6 1 1 3.6e-12 1.7e-10 32.3 4.6 18 211 24 212 18 216 0.73 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 Arch_ATPase PF01637.13 234 0.00013 13.5 1.4 1 1 1.8e-05 0.00087 10.9 1.4 17 119 28 113 11 203 0.67 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_16 PF13191.1 185 5.8e-05 15.0 0.1 1 1 1.7e-06 7.9e-05 14.5 0.1 25 62 32 70 19 199 0.82 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_23 PF13476.1 202 9.4e-06 17.9 9.3 1 1 2.6e-06 0.00012 14.2 9.3 11 43 22 54 10 209 0.57 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_18 PF13238.1 129 2.5e-08 26.2 1.0 1 1 2.6e-07 1.3e-05 17.4 1.0 1 94 34 211 34 219 0.75 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_13 PF13166.1 712 7.7e-07 19.7 0.1 1 2 0.013 0.62 0.2 0.0 21 41 36 56 18 83 0.79 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_13 PF13166.1 712 7.7e-07 19.7 0.1 2 2 9.5e-08 4.6e-06 17.1 0.0 526 580 156 209 146 215 0.87 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 HI0933_like PF03486.9 409 7.6e-05 13.1 0.1 1 1 2.4e-06 0.00012 12.5 0.1 2 67 170 235 169 243 0.80 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 AAA_29 PF13555.1 62 8.4e-07 20.4 0.1 1 1 2.8e-08 1.4e-06 19.7 0.1 17 41 26 49 19 67 0.76 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 272 AAA PF00004.24 132 9.3e-06 17.8 1.0 1 1 6e-06 0.00029 12.9 1.0 3 110 32 166 31 189 0.65 # 6722 # 7537 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 DUF258 PF03193.11 161 4.4e-05 14.6 0.0 1 1 1.7e-06 8.2e-05 13.7 0.0 33 54 29 50 6 84 0.79 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_33 PF13671.1 143 1.1e-05 17.2 1.2 1 1 6.4e-07 3.1e-05 15.8 0.4 1 17 33 49 33 116 0.73 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 2-Hacid_dh_C PF02826.14 178 2.5e-05 15.3 0.0 1 1 9e-07 4.3e-05 14.6 0.0 29 82 161 215 142 232 0.82 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 FtsK_SpoIIIE PF01580.13 205 6.8e-05 14.2 0.0 1 1 2.6e-06 0.00013 13.4 0.0 28 55 21 48 7 62 0.83 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 MTS PF05175.9 170 0.00018 12.8 0.2 1 1 8.7e-06 0.00042 11.6 0.0 31 101 167 238 146 242 0.86 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 Dynamin_N PF00350.18 168 0.00011 13.9 2.4 1 1 8.6e-06 0.00041 12.0 2.4 1 166 34 197 34 199 0.67 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 ABC_tran PF00005.22 137 4.1e-33 106.5 0.2 1 1 1.2e-34 5.6e-33 106.0 0.2 2 137 22 168 21 168 0.91 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 UDPG_MGDP_dh_N PF03721.9 185 0.00015 13.1 0.1 1 2 0.042 2 -0.4 0.0 30 51 77 98 66 108 0.61 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_25 - 301 UDPG_MGDP_dh_N PF03721.9 185 0.00015 13.1 0.1 2 2 1.7e-05 0.0008 10.7 0.0 2 41 170 210 169 224 0.88 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 AAA_10 PF12846.2 304 4.1e-05 14.9 0.1 1 1 1.6e-06 7.7e-05 14.0 0.1 2 19 32 49 31 70 0.83 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 SbcCD_C PF13558.1 90 9.3e-05 14.2 0.2 1 1 9.3e-06 0.00045 12.1 0.2 62 89 156 183 130 184 0.80 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_9 - 272 DEAD PF00270.24 169 0.0006 11.2 1.7 1 1 4.1e-05 0.002 9.5 1.7 111 144 120 152 29 235 0.86 # 6722 # 7537 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_25 - 301 Pyr_redox PF00070.22 80 3.1e-06 19.5 0.1 1 2 3.5e-05 0.0017 10.7 0.0 10 62 68 114 67 127 0.84 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_25 - 301 Pyr_redox PF00070.22 80 3.1e-06 19.5 0.1 2 2 0.002 0.094 5.1 0.1 2 35 171 205 170 214 0.83 # 18459 # 19361 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.375 1_34 - 221 AAA_25 PF13481.1 194 8.4e-06 17.1 0.4 1 1 6.9e-07 3.3e-05 15.2 0.1 33 134 31 124 27 131 0.66 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 1_34 - 221 AAA_28 PF13521.1 163 0.00023 13.0 0.3 1 1 3.6e-05 0.0017 10.2 0.3 2 43 34 81 33 201 0.58 # 25662 # 26324 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.303 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/47c5becf-2e0d-4e0a-a8ca-bce9be7586b5 # Target file: checkm_output/bins/pGCA_001990205.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001990205.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/47c5becf-2e0d-4e0a-a8ca-bce9be7586b5 checkm_output/bins/pGCA_001990205.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:43 2020 # [ok]