# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 4450 NmrA PF05368.8 233 2.6e-07 20.6 11.1 1 3 2.8e-05 0.00054 9.8 0.6 1 65 654 727 654 748 0.79 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 NmrA PF05368.8 233 2.6e-07 20.6 11.1 2 3 2.4e-06 4.5e-05 13.3 0.2 1 63 2219 2289 2219 2308 0.78 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 NmrA PF05368.8 233 2.6e-07 20.6 11.1 3 3 0.0033 0.062 3.0 0.5 1 62 4007 4077 4007 4080 0.80 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 adh_short PF00106.20 167 3.2e-174 564.3 75.4 1 3 3.2e-59 3e-58 187.0 10.1 1 167 652 819 652 819 0.99 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 adh_short PF00106.20 167 3.2e-174 564.3 75.4 2 3 1.5e-65 1.4e-64 207.5 10.4 1 167 2217 2383 2217 2383 0.99 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 adh_short PF00106.20 167 3.2e-174 564.3 75.4 3 3 2.6e-64 2.4e-63 203.5 9.2 1 167 4005 4172 4005 4172 0.99 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_1 - 5193 adh_short PF00106.20 167 1.2e-58 188.3 16.9 1 2 7.9e-32 7.5e-31 97.8 8.5 1 167 267 434 267 434 0.98 # 3 # 15581 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.833 1_1 - 5193 adh_short PF00106.20 167 1.2e-58 188.3 16.9 2 2 1.1e-34 1.1e-33 107.1 1.2 3 167 3619 3784 3617 3784 0.98 # 3 # 15581 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.833 2_2 - 4450 Polysacc_synt_2 PF02719.10 294 4.8e-09 26.0 0.0 1 3 0.00014 0.0027 7.1 0.0 1 86 654 741 654 791 0.67 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 Polysacc_synt_2 PF02719.10 294 4.8e-09 26.0 0.0 2 3 4.1e-06 7.8e-05 12.2 0.0 1 87 2219 2306 2219 2352 0.71 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 Polysacc_synt_2 PF02719.10 294 4.8e-09 26.0 0.0 3 3 0.0026 0.049 3.0 0.0 1 87 4007 4095 4007 4140 0.74 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 KR PF08659.5 181 1.3e-184 598.7 47.0 1 3 7.1e-62 6.7e-61 195.6 8.1 1 180 652 831 652 832 0.98 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 KR PF08659.5 181 1.3e-184 598.7 47.0 2 3 7.4e-68 7.1e-67 215.1 8.2 1 180 2217 2395 2217 2396 0.98 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 KR PF08659.5 181 1.3e-184 598.7 47.0 3 3 1.3e-64 1.2e-63 204.6 5.8 1 180 4005 4184 4005 4185 0.98 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 1_1 - 5193 KR PF08659.5 181 1.5e-68 220.6 5.6 1 2 8.9e-37 8.4e-36 113.8 3.9 1 180 267 446 267 447 0.97 # 3 # 15581 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.833 1_1 - 5193 KR PF08659.5 181 1.5e-68 220.6 5.6 2 2 3.2e-34 3e-33 105.5 0.0 2 179 3618 3795 3617 3797 0.96 # 3 # 15581 # -1 # ID=1_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.833 2_2 - 4450 NAD_binding_4 PF07993.7 249 7.6e-07 18.8 10.8 1 3 1.2e-06 2.4e-05 13.9 0.4 1 50 656 705 656 727 0.89 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 NAD_binding_4 PF07993.7 249 7.6e-07 18.8 10.8 2 3 2.5e-05 0.00047 9.6 0.1 1 50 2221 2269 2221 2361 0.83 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 NAD_binding_4 PF07993.7 249 7.6e-07 18.8 10.8 3 3 0.055 1 -1.3 0.1 1 54 4009 4062 4009 4156 0.67 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 RmlD_sub_bind PF04321.12 287 0.00018 11.0 2.9 1 2 0.015 0.29 0.5 0.3 3 58 654 711 652 717 0.81 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 RmlD_sub_bind PF04321.12 287 0.00018 11.0 2.9 2 2 2.9e-05 0.00056 9.3 0.2 3 57 2219 2274 2217 2304 0.83 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 3Beta_HSD PF01073.14 280 8.8e-05 11.8 2.0 1 3 0.01 0.19 0.8 0.1 1 81 655 741 655 799 0.63 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 3Beta_HSD PF01073.14 280 8.8e-05 11.8 2.0 2 3 2.6e-05 0.00049 9.4 0.1 1 89 2220 2313 2220 2331 0.78 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 3Beta_HSD PF01073.14 280 8.8e-05 11.8 2.0 3 3 0.073 1.4 -2.0 0.0 1 90 4008 4111 4008 4142 0.68 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 Epimerase PF01370.16 236 5e-17 52.6 5.3 1 3 4.2e-07 8e-06 15.9 0.1 1 122 654 794 654 814 0.81 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 Epimerase PF01370.16 236 5e-17 52.6 5.3 2 3 5.2e-11 9.9e-10 28.7 0.1 1 118 2219 2353 2219 2368 0.86 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 2_2 - 4450 Epimerase PF01370.16 236 5e-17 52.6 5.3 3 3 7e-05 0.0013 8.7 0.2 1 122 4007 4147 4007 4159 0.76 # 1364 # 14713 # -1 # ID=2_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.711 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/a400e035-183f-4e1a-8e17-eb0df7027df0 # Target file: checkm_output/bins/pGCA_001983975.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001983975.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/a400e035-183f-4e1a-8e17-eb0df7027df0 checkm_output/bins/pGCA_001983975.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:40 2020 # [ok]