# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_2 - 262 MipZ PF09140.6 261 1.4e-07 22.3 0.0 1 2 2.7e-06 9.4e-05 13.0 0.0 7 46 10 48 5 70 0.81 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 MipZ PF09140.6 261 1.4e-07 22.3 0.0 2 2 0.00015 0.0052 7.2 0.0 87 122 111 146 74 153 0.79 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 YhjQ PF06564.7 244 2.9e-11 34.5 0.0 1 1 1.3e-12 4.6e-11 33.9 0.0 10 154 12 159 5 172 0.82 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_5 - 455 3HCDH_N PF02737.13 180 2.8e-07 21.7 0.0 1 1 3.6e-08 6.4e-07 20.6 0.0 1 31 154 184 154 226 0.90 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 3HCDH_N PF02737.13 180 0.00021 12.4 0.0 1 1 1.9e-05 0.00032 11.8 0.0 1 50 149 199 149 237 0.78 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 GIDA PF01134.17 392 2.4e-07 21.3 0.0 1 2 0.00034 0.0059 6.8 0.0 1 55 5 60 5 86 0.80 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 GIDA PF01134.17 392 2.4e-07 21.3 0.0 2 2 1.3e-05 0.00023 11.5 0.0 2 28 155 181 154 210 0.88 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 GIDA PF01134.17 392 1.6e-05 15.2 0.2 1 2 0.0043 0.075 3.2 0.0 92 150 59 115 17 127 0.79 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 GIDA PF01134.17 392 1.6e-05 15.2 0.2 2 2 7.1e-05 0.0012 9.1 0.0 2 30 150 178 149 200 0.85 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 Pyr_redox_2 PF07992.9 201 3.6e-34 109.8 0.2 1 1 2.9e-35 5.2e-34 109.3 0.2 1 197 5 285 5 288 0.94 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 Pyr_redox_2 PF07992.9 201 1.5e-30 97.9 0.1 1 1 1.5e-30 2.7e-29 93.9 0.1 1 200 11 285 11 286 0.91 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 NAD_binding_7 PF13241.1 103 3e-11 35.0 0.1 1 2 3.3e-05 0.00057 11.6 0.0 7 71 9 92 5 113 0.68 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 NAD_binding_7 PF13241.1 103 3e-11 35.0 0.1 2 2 3.7e-08 6.5e-07 21.1 0.0 7 41 147 186 144 240 0.74 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 NAD_binding_7 PF13241.1 103 2e-06 19.5 0.4 1 2 0.0063 0.11 4.3 0.0 6 45 2 53 1 111 0.67 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 NAD_binding_7 PF13241.1 103 2e-06 19.5 0.4 2 2 1.1e-05 0.0002 13.1 0.1 8 38 153 183 147 263 0.83 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 227 AAA_21 PF13304.1 303 5.8e-05 14.5 0.3 1 1 2.7e-06 9.4e-05 13.8 0.0 3 81 9 87 7 121 0.85 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_2 - 262 ArsA_ATPase PF02374.10 305 3.1e-10 30.9 0.2 1 1 6.6e-11 2.3e-09 28.1 0.2 6 70 9 68 4 138 0.62 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_13 - 402 Shikimate_DH PF01488.15 135 0.00011 13.8 0.1 1 2 0.0089 0.31 2.6 0.0 9 41 6 39 2 45 0.79 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Shikimate_DH PF01488.15 135 0.00011 13.8 0.1 2 2 0.00018 0.0064 8.0 0.0 12 38 147 173 137 177 0.79 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_32 - 227 Zeta_toxin PF06414.7 201 3.2e-17 53.7 0.4 1 1 7.5e-18 2.6e-16 50.7 0.4 15 192 4 164 2 174 0.85 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_5 - 455 NAD_binding_8 PF13450.1 68 1.9e-06 19.3 0.1 1 2 0.00027 0.0094 7.5 0.0 1 31 8 40 8 47 0.84 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 NAD_binding_8 PF13450.1 68 1.9e-06 19.3 0.1 2 2 8.7e-05 0.0031 9.1 0.0 1 31 157 187 157 194 0.92 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 F420_oxidored PF03807.12 96 0.00058 11.8 1.3 1 2 0.029 1 1.3 0.4 3 35 13 43 11 100 0.85 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 F420_oxidored PF03807.12 96 0.00058 11.8 1.3 2 2 0.00018 0.0062 8.5 0.0 1 30 149 175 149 192 0.88 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 FAD_binding_3 PF01494.14 356 6.3e-05 13.5 0.5 1 2 0.025 0.88 -0.1 0.1 119 156 67 104 53 113 0.77 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 FAD_binding_3 PF01494.14 356 6.3e-05 13.5 0.5 2 2 1.5e-05 0.00051 10.5 0.0 3 34 154 185 153 245 0.86 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_2 - 262 VirC1 PF07015.6 231 0.0001 12.9 0.1 1 2 4.5e-05 0.0016 9.0 0.0 8 40 10 42 4 55 0.85 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 VirC1 PF07015.6 231 0.0001 12.9 0.1 2 2 0.0075 0.26 1.7 0.0 82 148 121 189 109 208 0.75 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 Fer4_NifH PF00142.13 273 3.3e-06 17.8 0.0 1 1 1.9e-07 6.7e-06 16.8 0.0 8 48 12 52 7 61 0.90 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_32 - 227 AAA_23 PF13476.1 202 5.4e-05 15.0 3.2 1 1 3.1e-06 0.00011 14.0 3.2 21 133 7 181 3 222 0.57 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_2 - 262 CbiA PF01656.18 195 1.4e-31 100.8 0.0 1 1 4.9e-33 1.7e-31 100.5 0.0 4 193 9 223 6 225 0.79 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_13 - 402 HI0933_like PF03486.9 409 1.4e-08 24.9 0.1 1 3 3.5e-05 0.00062 9.7 0.0 122 165 76 116 70 127 0.84 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 HI0933_like PF03486.9 409 1.4e-08 24.9 0.1 2 3 0.00053 0.0092 5.8 0.0 2 36 149 183 148 190 0.89 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 HI0933_like PF03486.9 409 1.4e-08 24.9 0.1 3 3 0.00048 0.0085 5.9 0.0 115 163 195 242 187 250 0.86 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 HI0933_like PF03486.9 409 3.8e-06 16.9 1.0 1 3 0.00037 0.0064 6.3 0.0 110 163 60 115 11 120 0.77 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 HI0933_like PF03486.9 409 3.8e-06 16.9 1.0 2 3 0.00017 0.0031 7.4 0.2 2 33 154 185 153 189 0.91 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 HI0933_like PF03486.9 409 3.8e-06 16.9 1.0 3 3 0.048 0.84 -0.7 0.0 121 163 205 245 194 249 0.79 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 227 AAA_29 PF13555.1 62 8.7e-06 16.7 0.0 1 1 5.4e-07 1.9e-05 15.6 0.0 26 47 8 29 2 38 0.80 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_5 - 455 FAD_binding_2 PF00890.19 417 0.00034 10.9 0.0 1 3 0.0011 0.04 4.1 0.0 2 99 6 100 5 129 0.79 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 FAD_binding_2 PF00890.19 417 0.00034 10.9 0.0 2 3 0.0084 0.29 1.2 0.0 2 29 155 182 154 187 0.92 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 FAD_binding_2 PF00890.19 417 0.00034 10.9 0.0 3 3 0.007 0.24 1.5 0.0 376 401 265 284 215 289 0.82 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Thi4 PF01946.12 230 9.8e-05 12.9 0.1 1 2 0.012 0.43 1.0 0.0 19 48 5 36 2 53 0.80 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Thi4 PF01946.12 230 9.8e-05 12.9 0.1 2 2 3.5e-05 0.0012 9.3 0.0 6 47 141 182 136 189 0.87 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 Pyr_redox_3 PF13738.1 203 9.5e-15 46.6 0.1 1 2 1.1e-13 1.9e-12 39.1 0.0 95 200 76 180 59 183 0.84 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Pyr_redox_3 PF13738.1 203 9.5e-15 46.6 0.1 2 2 0.0044 0.078 4.4 0.0 84 142 191 247 184 295 0.79 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 Pyr_redox_3 PF13738.1 203 2.8e-14 45.0 0.0 1 3 0.00047 0.0083 7.6 0.0 167 194 3 32 1 38 0.81 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Pyr_redox_3 PF13738.1 203 2.8e-14 45.0 0.0 2 3 4.9e-11 8.6e-10 30.4 0.0 96 196 73 181 50 187 0.80 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Pyr_redox_3 PF13738.1 203 2.8e-14 45.0 0.0 3 3 0.01 0.18 3.2 0.0 82 147 194 255 190 283 0.78 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 227 DUF258 PF03193.11 161 0.00031 11.4 0.3 1 1 9.9e-05 0.0035 8.0 0.3 36 55 6 25 1 144 0.71 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_2 - 262 AAA_31 PF13614.1 157 3.6e-10 31.4 0.1 1 2 1.3e-07 4.4e-06 18.1 0.0 9 56 12 58 9 95 0.84 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 AAA_31 PF13614.1 157 3.6e-10 31.4 0.1 2 2 1.7e-05 0.00061 11.2 0.0 109 149 114 153 112 161 0.78 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_32 - 227 AAA_33 PF13671.1 143 9.5e-12 36.4 0.0 1 1 4e-13 1.4e-11 35.9 0.0 2 137 8 139 7 146 0.80 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_13 - 402 NAD_Gly3P_dh_N PF01210.18 157 7.9e-06 17.1 0.0 1 1 4.3e-07 1.5e-05 16.2 0.0 2 33 150 181 149 208 0.84 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 2-Hacid_dh_C PF02826.14 178 4.1e-05 14.2 0.0 1 1 2.9e-06 0.0001 12.9 0.0 18 68 134 184 129 197 0.86 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 ApbA PF02558.11 151 0.00019 12.3 0.0 1 1 2e-05 0.00069 10.5 0.0 1 31 150 180 150 234 0.92 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Lycopene_cycl PF05834.7 374 2.7e-05 14.6 0.0 1 4 0.058 2 -1.5 0.0 3 38 13 48 12 61 0.80 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Lycopene_cycl PF05834.7 374 2.7e-05 14.6 0.0 2 4 0.099 3.5 -2.2 0.0 106 143 83 118 75 129 0.82 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Lycopene_cycl PF05834.7 374 2.7e-05 14.6 0.0 3 4 7.9e-05 0.0028 7.9 0.0 2 30 150 176 149 186 0.79 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Lycopene_cycl PF05834.7 374 2.7e-05 14.6 0.0 4 4 0.0034 0.12 2.6 0.0 94 149 196 254 188 269 0.74 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_32 - 227 ABC_tran PF00005.22 137 9.7e-06 17.4 0.8 1 1 6.3e-07 2.2e-05 16.2 0.8 12 80 6 118 2 221 0.72 # 25919 # 26599 # -1 # ID=1_32;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.366 1_13 - 402 K_oxygenase PF13434.1 341 4.7e-07 20.4 0.1 1 3 0.083 1.5 -1.0 0.0 188 224 7 43 2 72 0.80 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 K_oxygenase PF13434.1 341 4.7e-07 20.4 0.1 2 3 2.8e-07 4.9e-06 17.0 0.0 112 222 80 177 53 185 0.74 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 K_oxygenase PF13434.1 341 4.7e-07 20.4 0.1 3 3 0.057 1 -0.5 0.0 132 161 222 247 191 256 0.69 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 K_oxygenase PF13434.1 341 5.3e-07 20.2 0.1 1 2 0.0018 0.032 4.5 0.0 190 222 3 35 1 72 0.88 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 K_oxygenase PF13434.1 341 5.3e-07 20.2 0.1 2 2 3.4e-06 6e-05 13.4 0.0 112 216 76 178 68 190 0.75 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 UDPG_MGDP_dh_N PF03721.9 185 1.1e-07 22.9 0.1 1 1 1.4e-08 2.4e-07 21.7 0.0 2 54 154 207 153 251 0.83 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 UDPG_MGDP_dh_N PF03721.9 185 5.8e-05 13.9 0.0 1 1 6e-06 0.0001 13.1 0.0 2 29 149 176 148 181 0.93 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_2 - 262 SPOUT_MTase_2 PF14419.1 174 8.1e-05 13.3 0.0 1 2 2.6e-05 0.00092 9.8 0.0 74 119 15 60 9 70 0.90 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_2 - 262 SPOUT_MTase_2 PF14419.1 174 8.1e-05 13.3 0.0 2 2 0.017 0.59 0.7 0.0 143 167 125 151 118 159 0.73 # 1187 # 1972 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.346 1_13 - 402 DAO PF01266.19 358 6.8e-12 36.3 4.0 1 3 2.9e-05 0.00051 10.4 0.0 161 212 77 126 60 144 0.81 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 DAO PF01266.19 358 6.8e-12 36.3 4.0 2 3 1.6e-05 0.00028 11.2 0.0 2 28 150 176 149 186 0.88 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 DAO PF01266.19 358 6.8e-12 36.3 4.0 3 3 2.2e-06 3.9e-05 14.0 0.0 154 202 196 244 188 283 0.91 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 DAO PF01266.19 358 3.1e-11 34.1 0.8 1 4 0.045 0.79 -0.1 0.0 2 33 6 39 5 46 0.88 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 DAO PF01266.19 358 3.1e-11 34.1 0.8 2 4 7.7e-05 0.0013 9.0 0.0 156 214 68 128 61 141 0.75 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 DAO PF01266.19 358 3.1e-11 34.1 0.8 3 4 5.6e-05 0.00098 9.4 0.1 2 32 155 185 154 190 0.89 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 DAO PF01266.19 358 3.1e-11 34.1 0.8 4 4 2.2e-05 0.00038 10.8 0.0 165 202 211 247 199 267 0.84 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 ThiF PF00899.16 136 5.8e-05 14.4 0.1 1 1 1.2e-05 0.00043 11.6 0.0 4 34 154 183 152 186 0.91 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 NAD_binding_9 PF13454.1 156 1e-07 23.2 2.3 1 4 0.036 1.2 0.3 0.0 1 33 13 42 13 59 0.78 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 NAD_binding_9 PF13454.1 156 1e-07 23.2 2.3 2 4 0.00015 0.0053 8.0 0.0 117 155 80 115 62 116 0.77 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 NAD_binding_9 PF13454.1 156 1e-07 23.2 2.3 3 4 0.00089 0.031 5.5 0.0 1 38 151 184 151 195 0.76 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 NAD_binding_9 PF13454.1 156 1e-07 23.2 2.3 4 4 0.00033 0.012 6.9 0.0 101 154 189 242 177 244 0.76 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 Pyr_redox PF00070.22 80 2.3e-20 64.3 2.9 1 2 0.00019 0.0034 9.3 0.8 1 77 5 94 5 102 0.62 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Pyr_redox PF00070.22 80 2.3e-20 64.3 2.9 2 2 4.4e-17 7.8e-16 49.8 0.1 1 78 154 231 154 234 0.94 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 Pyr_redox PF00070.22 80 1.3e-16 52.2 7.4 1 2 0.0048 0.084 4.8 0.0 51 77 72 98 52 102 0.69 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 Pyr_redox PF00070.22 80 1.3e-16 52.2 7.4 2 2 1.5e-16 2.7e-15 48.1 0.0 1 72 149 221 149 229 0.93 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 Amino_oxidase PF01593.19 450 0.00014 12.4 0.1 1 3 0.0039 0.14 2.5 0.0 7 26 19 40 18 40 0.85 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Amino_oxidase PF01593.19 450 0.00014 12.4 0.1 2 3 0.00037 0.013 5.9 0.0 222 261 72 114 62 122 0.80 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 Amino_oxidase PF01593.19 450 0.00014 12.4 0.1 3 3 0.043 1.5 -0.9 0.0 237 262 221 245 193 254 0.81 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 TrkA_N PF02254.13 116 1.1e-05 16.9 0.7 1 2 0.006 0.21 3.1 0.1 1 31 12 44 12 52 0.84 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 TrkA_N PF02254.13 116 1.1e-05 16.9 0.7 2 2 1.6e-05 0.00055 11.4 0.0 1 27 150 176 150 182 0.89 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_5 - 455 IlvN PF07991.7 165 0.00033 11.5 0.8 1 2 4.1e-05 0.0014 9.4 0.1 3 79 2 79 1 149 0.72 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 IlvN PF07991.7 165 0.00033 11.5 0.8 2 2 0.028 0.99 0.2 0.1 5 31 153 179 148 183 0.86 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_5 - 455 AlaDh_PNT_C PF01262.16 168 8.6e-05 13.6 0.1 1 1 1.2e-05 0.00021 12.3 0.1 11 51 143 183 136 190 0.86 # 3950 # 5314 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_13 - 402 AlaDh_PNT_C PF01262.16 168 0.00045 11.2 3.0 1 3 0.018 0.32 1.9 0.0 21 37 10 26 4 44 0.83 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 AlaDh_PNT_C PF01262.16 168 0.00045 11.2 3.0 2 3 0.00051 0.009 7.0 0.2 21 51 148 175 143 218 0.68 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 1_13 - 402 AlaDh_PNT_C PF01262.16 168 0.00045 11.2 3.0 3 3 0.049 0.86 0.5 0.1 5 30 218 243 214 244 0.89 # 9769 # 10974 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.443 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/67ae41f2-82bd-4e6b-ab9f-85307aef1a14 # Target file: checkm_output/bins/pGCA_001971585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001971585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/67ae41f2-82bd-4e6b-ab9f-85307aef1a14 checkm_output/bins/pGCA_001971585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:37 2020 # [ok]