# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_2 - 231 IstB_IS21 PF01695.12 178 0.00014 12.8 1.1 1 2 0.0005 0.019 5.9 0.0 33 63 14 43 6 55 0.79 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 IstB_IS21 PF01695.12 178 0.00014 12.8 1.1 2 2 0.00062 0.023 5.6 0.2 97 149 135 186 106 200 0.83 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_11 - 180 Eno-Rase_FAD_bd PF07055.7 65 0.00027 12.5 3.1 1 2 8.8e-06 0.00033 12.2 0.9 9 50 31 72 26 75 0.90 # 6991 # 7530 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 2_11 - 180 Eno-Rase_FAD_bd PF07055.7 65 0.00027 12.5 3.1 2 2 0.09 3.3 -0.7 0.0 39 51 90 102 76 103 0.78 # 6991 # 7530 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.359 1_17 - 138 Usp PF00582.21 140 1.9e-25 81.2 0.0 1 1 6e-27 2.2e-25 81.0 0.0 1 140 1 137 1 137 0.93 # 15737 # 16150 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_2 - 231 DUF87 PF01935.12 229 0.00011 13.5 4.2 1 1 1.6e-05 0.00061 11.1 4.2 26 81 30 109 28 194 0.78 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_22 PF13401.1 131 1.2e-05 17.0 4.9 1 1 1.1e-05 0.0004 12.0 4.6 3 123 26 184 23 191 0.62 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_23 - 225 AAA_17 PF13207.1 121 1.7e-06 20.4 1.2 1 1 1.3e-07 2.4e-06 19.9 1.2 22 114 23 123 15 202 0.85 # 23547 # 24221 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 2_2 - 231 AAA_17 PF13207.1 121 3.3e-06 19.5 1.7 1 1 4.2e-07 7.8e-06 18.3 1.7 1 63 29 115 29 208 0.54 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_21 PF13304.1 303 1.5e-13 42.8 15.3 1 2 4.9e-09 1.8e-07 22.8 2.6 2 42 30 68 29 82 0.71 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_21 PF13304.1 303 1.5e-13 42.8 15.3 2 2 8.7e-10 3.2e-08 25.3 6.8 165 303 76 192 56 192 0.74 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 Miro PF08477.8 119 4.4e-06 18.7 0.0 1 1 1.9e-07 7e-06 18.1 0.0 2 113 30 141 29 149 0.76 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 MobB PF03205.9 140 0.00014 13.1 0.1 1 1 6.7e-06 0.00025 12.3 0.1 3 22 30 48 28 70 0.75 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 Zeta_toxin PF06414.7 201 4e-05 14.3 0.0 1 1 1.7e-06 6.4e-05 13.6 0.0 19 50 30 62 23 82 0.91 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 SMC_N PF02463.14 220 0.00027 11.7 2.1 1 2 1.4e-05 0.00051 10.8 0.1 26 44 29 47 7 57 0.80 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 SMC_N PF02463.14 220 0.00027 11.7 2.1 2 2 0.02 0.72 0.5 0.2 161 205 149 194 98 207 0.77 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_16 PF13191.1 185 5.3e-05 14.7 0.0 1 1 2.9e-06 0.00011 13.8 0.0 24 53 27 56 16 76 0.84 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_23 PF13476.1 202 9.1e-05 14.3 7.4 1 1 5.4e-06 0.0002 13.2 6.8 16 81 23 99 6 194 0.57 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_18 PF13238.1 129 6.9e-06 17.9 3.6 1 1 4.7e-07 1.7e-05 16.6 3.6 1 69 30 132 30 192 0.60 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_10 - 257 adh_short PF00106.20 167 8.4e-10 30.3 0.0 1 1 2.8e-11 1e-09 30.0 0.0 10 163 18 175 7 179 0.78 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_2 - 231 AAA_14 PF13173.1 128 8e-06 17.3 6.8 1 2 1.5e-05 0.00057 11.3 0.2 4 42 29 65 26 95 0.62 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_14 PF13173.1 128 8e-06 17.3 6.8 2 2 0.0001 0.0039 8.6 2.1 21 109 94 197 87 200 0.65 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_29 PF13555.1 62 6.9e-06 17.1 0.0 1 1 3.4e-07 1.3e-05 16.3 0.0 19 40 24 44 15 48 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA PF00004.24 132 0.00034 12.3 2.6 1 1 4.6e-05 0.0017 10.1 2.6 2 35 31 66 30 198 0.58 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_10 - 257 KR PF08659.5 181 9.8e-07 20.1 0.0 1 1 4.1e-08 1.5e-06 19.5 0.0 12 90 20 95 8 112 0.82 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_2 - 231 DUF258 PF03193.11 161 3.5e-05 14.5 0.0 1 1 1.6e-06 5.8e-05 13.8 0.0 21 67 12 59 2 76 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 NTPase_1 PF03266.10 168 0.00082 10.6 3.4 1 2 0.00011 0.0043 8.3 0.1 2 24 30 52 29 75 0.79 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 NTPase_1 PF03266.10 168 0.00082 10.6 3.4 2 2 0.004 0.15 3.3 0.4 88 150 139 198 117 220 0.67 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_33 PF13671.1 143 0.00031 12.1 0.0 1 1 1.2e-05 0.00043 11.7 0.0 2 19 30 47 29 110 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_10 - 257 2-Hacid_dh_C PF02826.14 178 0.00031 11.4 0.1 1 2 2.5e-05 0.00094 9.8 0.0 33 78 3 51 1 67 0.79 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 1_10 - 257 2-Hacid_dh_C PF02826.14 178 0.00031 11.4 0.1 2 2 0.061 2.3 -1.2 0.0 27 51 60 84 51 87 0.48 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_2 - 231 ABC_tran PF00005.22 137 3.4e-24 77.2 0.0 1 1 1.3e-25 4.9e-24 76.7 0.0 1 136 17 156 17 157 0.91 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_17 - 138 SAM_MT PF04445.8 235 5.8e-06 17.1 0.1 1 1 1.9e-07 7e-06 16.8 0.1 9 110 34 135 29 137 0.83 # 15737 # 16150 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.297 2_2 - 231 AAA_19 PF13245.1 76 0.00038 11.7 0.0 1 1 2e-05 0.00074 10.8 0.0 13 36 30 52 24 69 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_10 PF12846.2 304 1.4e-06 19.4 0.0 1 2 2.3e-05 0.00087 10.2 0.0 4 23 30 49 28 82 0.82 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_10 PF12846.2 304 1.4e-06 19.4 0.0 2 2 0.00023 0.0085 7.0 0.0 218 267 144 192 120 208 0.88 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 1_10 - 257 adh_short_C2 PF13561.1 241 5.2e-79 256.9 0.0 1 1 1.6e-80 5.8e-79 256.7 0.0 1 241 13 253 13 253 0.98 # 7278 # 8048 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.359 2_2 - 231 PduV-EutP PF10662.4 143 0.00012 13.1 0.1 1 1 6.6e-06 0.00024 12.1 0.1 4 24 30 50 28 68 0.87 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 UPF0079 PF02367.12 123 0.00014 13.0 0.1 1 1 8.7e-06 0.00032 11.9 0.1 12 39 24 51 14 61 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 NACHT PF05729.7 166 0.00029 12.0 1.1 1 1 1.3e-05 0.0005 11.3 0.5 2 20 29 47 28 56 0.85 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_28 PF13521.1 163 2.7e-05 15.7 0.1 1 1 1.2e-06 4.4e-05 15.0 0.1 2 20 30 48 29 72 0.77 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_5 PF07728.9 139 0.00026 12.2 0.1 1 2 4.3e-05 0.0016 9.7 0.0 4 34 32 62 30 81 0.81 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 2_2 - 231 AAA_5 PF07728.9 139 0.00026 12.2 0.1 2 2 0.036 1.3 0.2 0.0 79 94 135 150 95 221 0.67 # 725 # 1417 # 1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.227 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7a0a0bd2-b58d-4e78-9be8-ef80e8210566 # Target file: checkm_output/bins/pGCA_001956655.2.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001956655.2.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7a0a0bd2-b58d-4e78-9be8-ef80e8210566 checkm_output/bins/pGCA_001956655.2.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:34 2020 # [ok]