# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_86 - 258 MipZ PF09140.6 261 6.6e-14 44.5 2.2 1 1 7.9e-15 8e-13 40.9 2.2 2 131 5 149 4 169 0.75 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_86 - 258 YhjQ PF06564.7 244 0.00015 14.1 0.1 1 2 1.3e-05 0.0014 11.0 0.0 1 39 3 41 3 49 0.85 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_86 - 258 YhjQ PF06564.7 244 0.00015 14.1 0.1 2 2 0.021 2.2 0.5 0.0 168 216 179 228 162 253 0.72 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_28 - 258 3HCDH_N PF02737.13 180 7.9e-05 15.3 1.2 1 2 1.5e-06 0.00016 14.3 0.1 6 79 15 90 9 94 0.73 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_28 - 258 3HCDH_N PF02737.13 180 7.9e-05 15.3 1.2 2 2 0.065 6.6 -0.8 0.1 103 121 143 161 136 190 0.72 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_55 - 169 SSB PF00436.20 104 4.9e-39 125.4 0.4 1 1 6.3e-41 6.4e-39 125.0 0.4 1 100 5 107 5 111 0.96 # 44936 # 45442 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_68 - 982 UvrD_C_2 PF13538.1 104 1.5e-13 43.8 0.1 1 1 8.6e-15 8.8e-13 41.3 0.1 2 103 810 916 809 917 0.77 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_24 - 252 Usp PF00582.21 140 4.8e-23 74.8 0.2 1 2 2.7e-07 2.7e-05 17.3 0.1 70 140 37 125 6 125 0.74 # 21300 # 22055 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_24 - 252 Usp PF00582.21 140 4.8e-23 74.8 0.2 2 2 5.9e-19 6e-17 55.1 0.0 70 140 178 251 132 251 0.87 # 21300 # 22055 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.604 1_67 - 519 DUF87 PF01935.12 229 0.00014 14.6 0.0 1 1 6e-06 0.0003 13.5 0.0 26 68 141 182 128 266 0.85 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_83 - 895 DUF87 PF01935.12 229 0.00068 12.4 0.2 1 1 4.4e-05 0.0022 10.7 0.2 18 41 518 541 515 554 0.86 # 66382 # 69066 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_8 - 260 NmrA PF05368.8 233 2.1e-07 23.3 0.0 1 1 3.3e-09 3.4e-07 22.6 0.0 2 64 8 71 7 81 0.88 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_68 - 982 AAA_22 PF13401.1 131 4.1e-06 19.9 0.1 1 1 2e-07 2.1e-05 17.6 0.1 5 125 494 610 490 616 0.83 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_86 - 258 ATP_bind_1 PF03029.12 238 2.6e-05 16.7 0.0 1 1 1e-06 0.0001 14.8 0.0 6 99 14 125 12 154 0.71 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_46 - 435 Trp_halogenase PF04820.9 454 2.8e-08 25.6 2.0 1 3 6.3e-07 6.5e-05 14.6 0.2 1 70 9 76 9 98 0.84 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_46 - 435 Trp_halogenase PF04820.9 454 2.8e-08 25.6 2.0 2 3 6.6e-05 0.0067 7.9 0.1 166 220 123 175 108 179 0.79 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_46 - 435 Trp_halogenase PF04820.9 454 2.8e-08 25.6 2.0 3 3 0.0099 1 0.7 0.0 316 362 307 353 303 362 0.86 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_28 - 258 NAD_binding_7 PF13241.1 103 3.1e-05 17.2 0.1 1 1 5.3e-07 5.4e-05 16.4 0.1 4 81 4 78 1 188 0.77 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_86 - 258 MobB PF03205.9 140 1.5e-05 17.7 0.2 1 1 3.3e-07 3.4e-05 16.5 0.0 10 41 14 44 5 66 0.90 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_39 - 308 Semialdhyde_dh PF01118.19 121 1.5e-16 53.8 0.0 1 1 2.7e-18 2.8e-16 52.9 0.0 1 118 6 118 6 121 0.91 # 31967 # 32890 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_20 - 146 Helicase_C PF00271.26 78 2.1e-09 30.1 0.0 1 1 4.5e-11 4.6e-09 29.0 0.0 45 78 5 38 4 38 0.96 # 18853 # 19290 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.580 1_86 - 258 ArsA_ATPase PF02374.10 305 7.7e-07 21.3 0.1 1 2 3.7e-08 3.7e-06 19.0 0.0 9 38 12 41 3 62 0.91 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_86 - 258 ArsA_ATPase PF02374.10 305 7.7e-07 21.3 0.1 2 2 0.024 2.5 -0.1 0.0 119 136 107 126 95 171 0.82 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_68 - 982 PhoH PF02562.11 205 5.3e-08 25.2 3.3 1 2 1.5e-06 0.00015 13.9 0.2 6 45 478 518 475 534 0.84 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 PhoH PF02562.11 205 5.3e-08 25.2 3.3 2 2 8.6e-06 0.00087 11.5 0.3 120 163 574 618 561 652 0.70 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_75 - 343 T2SE PF00437.15 272 5.8e-61 198.6 0.0 1 1 6.8e-63 6.9e-61 198.4 0.0 6 267 15 322 10 325 0.95 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_46 - 435 NAD_binding_8 PF13450.1 68 3.4e-06 20.0 1.3 1 1 3.3e-08 3.4e-06 20.0 1.3 1 32 12 44 12 66 0.85 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_46 - 435 FAD_binding_3 PF01494.14 356 6.1e-17 54.5 8.5 1 2 1.1e-07 1.2e-05 17.5 1.9 4 178 10 172 8 179 0.69 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_46 - 435 FAD_binding_3 PF01494.14 356 6.1e-17 54.5 8.5 2 2 3.6e-14 3.7e-12 38.8 0.6 288 353 304 370 293 373 0.89 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_86 - 258 VirC1 PF07015.6 231 3.2e-06 19.3 0.0 1 2 1.9e-07 1.9e-05 16.7 0.0 1 40 3 42 3 49 0.94 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_86 - 258 VirC1 PF07015.6 231 3.2e-06 19.3 0.0 2 2 0.022 2.2 0.1 0.0 72 113 106 146 92 169 0.75 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_86 - 258 Fer4_NifH PF00142.13 273 0.0011 11.0 0.0 1 1 1.9e-05 0.002 10.3 0.0 8 37 12 41 6 46 0.91 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_28 - 258 adh_short PF00106.20 167 6e-31 100.5 0.2 1 1 1.5e-32 7.5e-31 100.2 0.2 3 166 10 175 8 176 0.90 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_8 - 260 adh_short PF00106.20 167 1.1e-21 70.4 0.0 1 1 2.8e-23 1.4e-21 70.0 0.0 2 166 6 171 5 172 0.88 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_39 - 308 GFO_IDH_MocA PF01408.17 120 0.00055 13.4 0.0 1 1 1.3e-05 0.0013 12.2 0.0 2 86 6 94 5 98 0.76 # 31967 # 32890 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_86 - 258 CbiA PF01656.18 195 1.1e-30 99.5 0.0 1 1 3.1e-32 1.6e-30 98.9 0.0 2 166 7 192 6 214 0.81 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_64 - 240 CbiA PF01656.18 195 4e-07 22.5 0.8 1 2 1.8e-05 0.0009 11.6 0.2 1 19 3 21 3 23 0.90 # 49889 # 50608 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_64 - 240 CbiA PF01656.18 195 4e-07 22.5 0.8 2 2 7.8e-05 0.004 9.5 0.0 118 175 95 153 43 176 0.86 # 49889 # 50608 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_19 - 344 AAA_14 PF13173.1 128 0.00072 12.4 0.1 1 1 2.8e-05 0.0029 10.5 0.1 52 87 240 280 230 302 0.66 # 17234 # 18265 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.578 1_46 - 435 SE PF08491.5 276 7.8e-06 17.8 0.0 1 1 1.8e-07 1.9e-05 16.5 0.0 132 194 309 369 298 381 0.88 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_28 - 258 KR PF08659.5 181 9.6e-16 50.9 0.1 1 1 3.2e-17 1.6e-15 50.1 0.1 4 110 11 112 9 186 0.83 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_8 - 260 KR PF08659.5 181 7.4e-05 15.4 0.1 1 1 3.2e-06 0.00016 14.3 0.1 4 99 8 96 6 178 0.79 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_75 - 343 MMR_HSR1 PF01926.18 116 0.00047 13.1 0.0 1 1 7.9e-06 0.0008 12.3 0.0 8 22 184 203 177 240 0.71 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_23 - 120 MEDS PF14417.1 191 0.00031 12.7 0.0 1 1 3.3e-06 0.00033 12.7 0.0 55 166 4 116 1 119 0.75 # 20941 # 21300 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.597 1_67 - 519 TraG-D_C PF12696.2 128 1.6e-22 72.7 0.0 1 1 2.9e-24 3e-22 71.8 0.0 1 127 363 480 363 481 0.88 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_86 - 258 AAA_31 PF13614.1 157 9.4e-10 31.6 0.1 1 1 1.9e-11 2e-09 30.5 0.1 1 154 4 152 4 155 0.83 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_68 - 982 AAA_30 PF13604.1 196 2.3e-54 176.8 6.0 1 1 5.9e-56 6e-54 175.5 6.0 1 192 476 672 476 676 0.97 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_67 - 519 FtsK_SpoIIIE PF01580.13 205 1.7e-05 17.3 0.0 1 1 5e-07 5.1e-05 15.7 0.0 5 78 105 174 101 182 0.72 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_75 - 343 Dynamin_N PF00350.18 168 0.00034 13.4 0.0 1 1 5.3e-06 0.00054 12.7 0.0 7 47 184 223 178 254 0.71 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_46 - 435 Lycopene_cycl PF05834.7 374 1.2e-05 17.3 0.1 1 1 3.9e-07 4e-05 15.6 0.0 4 143 12 167 10 189 0.79 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_75 - 343 ABC_tran PF00005.22 137 0.00017 14.9 0.0 1 1 2.8e-06 0.00029 14.1 0.0 10 49 174 214 170 235 0.78 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_75 - 343 TIGR03263 TIGR03263 180 0.00093 11.5 0.0 1 1 1.4e-05 0.0014 10.9 0.0 4 48 178 223 175 239 0.83 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_68 - 982 AAA_19 PF13245.1 76 9e-09 28.0 2.8 1 2 1.9e-08 1.9e-06 20.5 0.2 6 74 488 562 483 566 0.79 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 AAA_19 PF13245.1 76 9e-09 28.0 2.8 2 2 0.00074 0.075 5.8 0.0 41 63 691 716 679 735 0.74 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_28 - 258 NAD_binding_10 PF13460.1 183 8.9e-08 25.3 0.3 1 1 4e-09 2e-07 24.1 0.3 2 71 11 94 10 235 0.67 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_8 - 260 NAD_binding_10 PF13460.1 183 2.2e-06 20.7 0.2 1 1 8.6e-08 4.4e-06 19.7 0.0 2 58 8 69 7 74 0.87 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_83 - 895 AAA_10 PF12846.2 304 5.6e-20 64.8 0.1 1 1 8e-21 2.7e-19 62.6 0.0 2 294 524 796 523 803 0.86 # 66382 # 69066 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_67 - 519 AAA_10 PF12846.2 304 2.4e-12 39.8 0.1 1 1 1.1e-12 3.8e-11 35.8 0.1 2 299 139 441 138 445 0.69 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_75 - 343 AAA_10 PF12846.2 304 0.00073 11.9 0.0 1 1 3e-05 0.001 11.4 0.0 3 37 177 211 175 239 0.87 # 60399 # 61427 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_28 - 258 adh_short_C2 PF13561.1 241 2.4e-34 112.1 0.1 1 1 5.3e-36 2.7e-34 111.9 0.1 5 240 16 252 13 253 0.90 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_8 - 260 adh_short_C2 PF13561.1 241 4.1e-23 75.3 0.0 1 1 9.9e-25 5e-23 75.0 0.0 3 240 13 254 11 255 0.85 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_46 - 435 DAO PF01266.19 358 6.7e-09 27.9 2.9 1 2 7e-08 7.2e-06 18.0 0.6 2 70 10 82 9 90 0.70 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_46 - 435 DAO PF01266.19 358 6.7e-09 27.9 2.9 2 2 2.6e-05 0.0026 9.5 0.1 130 205 93 168 81 187 0.81 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_83 - 895 Zot PF05707.7 193 4.7e-05 15.8 0.0 1 1 1.3e-06 0.00014 14.3 0.0 81 132 726 773 687 782 0.84 # 66382 # 69066 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.523 1_68 - 982 Viral_helicase1 PF01443.13 234 2.5e-13 43.0 0.4 1 2 3.5e-07 3.6e-05 16.3 0.1 3 141 498 654 496 702 0.69 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 Viral_helicase1 PF01443.13 234 2.5e-13 43.0 0.4 2 2 9.6e-10 9.8e-08 24.7 0.1 184 234 872 918 829 918 0.82 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 DUF2075 PF09848.4 352 6.1e-07 21.6 0.9 1 2 8e-08 8.2e-06 17.9 1.1 4 129 496 612 493 672 0.78 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 DUF2075 PF09848.4 352 6.1e-07 21.6 0.9 2 2 0.014 1.4 0.6 0.0 275 309 873 907 866 934 0.68 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_46 - 435 NAD_binding_9 PF13454.1 156 2.2e-09 30.2 0.4 1 1 3.5e-10 3.5e-08 26.3 0.4 2 153 12 162 11 165 0.79 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_28 - 258 Epimerase PF01370.16 236 6.3e-07 21.9 0.4 1 1 1.4e-07 7e-06 18.5 0.4 2 76 11 94 10 202 0.76 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_8 - 260 Epimerase PF01370.16 236 1.1e-06 21.1 0.0 1 1 4.7e-08 2.4e-06 20.0 0.0 2 90 8 103 7 181 0.79 # 6469 # 7248 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.524 1_46 - 435 Pyr_redox PF00070.22 80 0.00072 12.9 1.4 1 1 1.1e-05 0.0011 12.4 0.4 1 35 9 44 9 51 0.85 # 37852 # 39156 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.638 1_67 - 519 TrwB_AAD_bind PF10412.4 386 3e-126 414.0 0.0 1 1 7e-128 3.5e-126 413.7 0.0 2 385 125 499 124 500 0.98 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_86 - 258 TrwB_AAD_bind PF10412.4 386 0.00043 11.8 0.0 1 1 1.3e-05 0.00065 11.3 0.0 25 65 14 54 6 57 0.90 # 70749 # 71522 # 1 # ID=1_86;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.537 1_87 - 309 Kinesin-relat_1 PF12711.2 86 0.0093 9.4 5.8 1 2 0.012 1.2 2.6 0.2 3 45 123 164 121 181 0.79 # 71536 # 72462 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.538 1_87 - 309 Kinesin-relat_1 PF12711.2 86 0.0093 9.4 5.8 2 2 0.00029 0.029 7.8 0.8 9 42 262 295 259 303 0.86 # 71536 # 72462 # 1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.538 1_67 - 519 T4SS-DNA_transf PF02534.9 469 2.8e-20 65.2 0.0 1 1 5.9e-21 6e-19 60.8 0.0 218 432 284 487 83 512 0.82 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_67 - 519 ArgK PF03308.11 267 0.00089 11.0 0.0 1 1 1.9e-05 0.0019 9.9 0.0 37 71 146 178 139 190 0.85 # 51874 # 53430 # 1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 PIF1 PF05970.9 364 0.00035 12.5 0.6 1 1 5.9e-06 0.0006 11.7 0.2 8 126 483 597 476 612 0.75 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_64 - 240 GTP_EFTU PF00009.22 188 0.0006 12.2 0.4 1 2 0.0021 0.22 3.9 0.0 13 25 11 23 4 47 0.89 # 49889 # 50608 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_64 - 240 GTP_EFTU PF00009.22 188 0.0006 12.2 0.4 2 2 0.00046 0.047 6.0 0.2 83 135 83 138 79 229 0.78 # 49889 # 50608 # -1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.562 1_28 - 258 TrkA_N PF02254.13 116 6.3e-06 19.2 0.2 1 1 5.8e-07 3e-05 17.0 0.1 2 57 12 72 11 78 0.84 # 24673 # 25446 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.559 1_39 - 308 TrkA_N PF02254.13 116 0.00065 12.7 0.1 1 1 3.8e-05 0.0019 11.1 0.0 2 43 8 53 7 101 0.88 # 31967 # 32890 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_55 - 169 tRNA_anti-codon PF01336.20 75 0.00035 13.4 0.1 1 1 5.3e-06 0.00054 12.8 0.1 26 63 52 92 50 110 0.83 # 44936 # 45442 # 1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.564 1_29 - 48 DUF1253 PF06862.7 442 5.9e-05 14.5 0.1 1 1 5.8e-07 5.9e-05 14.5 0.1 401 436 10 45 1 47 0.87 # 25520 # 25663 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.507 1_68 - 982 Herpes_Helicase PF02689.9 819 1.3e-05 16.1 0.5 1 3 0.042 4.3 -2.3 0.0 65 82 498 515 494 547 0.74 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 Herpes_Helicase PF02689.9 819 1.3e-05 16.1 0.5 2 3 0.0013 0.14 2.7 0.0 173 209 551 587 519 597 0.81 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 Herpes_Helicase PF02689.9 819 1.3e-05 16.1 0.5 3 3 4.6e-06 0.00047 10.8 0.0 743 784 873 915 858 922 0.88 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 1_68 - 982 AAA_5 PF07728.9 139 0.00054 12.7 0.2 1 1 2.6e-05 0.0027 10.4 0.1 4 95 498 603 496 627 0.83 # 53441 # 56386 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.555 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e55f9bfb-7525-481c-99d8-a9a85acefba7 # Target file: checkm_output/bins/pGCA_001952935.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001952935.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e55f9bfb-7525-481c-99d8-a9a85acefba7 checkm_output/bins/pGCA_001952935.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:36 2020 # [ok]