# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 289 MipZ PF09140.6 261 4.2e-15 48.4 0.1 1 2 2.5e-12 2.6e-10 32.7 0.1 3 56 9 62 7 92 0.89 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 MipZ PF09140.6 261 4.2e-15 48.4 0.1 2 2 1.5e-06 0.00015 13.8 0.0 78 125 122 169 96 179 0.84 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 YhjQ PF06564.7 244 1.8e-08 26.9 0.0 1 1 1.1e-09 1.1e-07 24.3 0.0 10 149 15 174 8 179 0.70 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_43 - 878 DUF2110 PF09883.4 225 6e-05 15.6 0.1 1 2 2.3e-05 0.0023 10.5 0.1 20 98 106 182 100 192 0.90 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 878 DUF2110 PF09883.4 225 6e-05 15.6 0.1 2 2 0.0077 0.78 2.2 0.0 146 184 635 670 603 674 0.80 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_49 - 646 DUF87 PF01935.12 229 0.00025 13.8 1.6 1 1 4.2e-06 0.00042 13.1 0.1 28 79 252 299 250 360 0.83 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_36 - 442 AAA_22 PF13401.1 131 0.0002 14.5 0.0 1 1 8.7e-06 0.00044 13.3 0.0 4 27 210 233 206 317 0.72 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 AAA_22 PF13401.1 131 0.00077 12.5 0.1 1 1 8.3e-05 0.0042 10.2 0.1 6 28 249 271 244 297 0.88 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 ATP_bind_1 PF03029.12 238 1.6e-07 24.0 0.2 1 1 8.7e-09 8.8e-07 21.6 0.2 6 48 17 51 15 207 0.66 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_72 - 66 Ribosomal_L2_C PF03947.13 130 0.00029 13.6 0.1 1 1 2.9e-06 0.00029 13.6 0.1 14 55 6 47 1 62 0.85 # 59849 # 60046 # 1 # ID=1_72;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.313 1_6 - 289 AAA_17 PF13207.1 121 2.6e-05 18.0 0.0 1 1 3.9e-06 0.0002 15.2 0.0 9 53 17 68 16 220 0.77 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_36 - 442 AAA_17 PF13207.1 121 0.0005 13.8 0.6 1 1 8.1e-05 0.0041 10.9 0.0 2 32 213 240 212 340 0.60 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 Miro PF08477.8 119 0.00011 15.7 0.4 1 1 3.6e-06 0.00037 14.0 0.1 3 51 251 299 250 329 0.82 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 MobB PF03205.9 140 0.00022 13.9 0.3 1 1 4.9e-06 0.0005 12.7 0.3 9 46 16 51 8 53 0.88 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 ArsA_ATPase PF02374.10 305 2.4e-09 29.5 0.0 1 2 1.1e-08 1.1e-06 20.8 0.0 8 43 14 49 7 69 0.90 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 ArsA_ATPase PF02374.10 305 2.4e-09 29.5 0.0 2 2 0.00024 0.024 6.5 0.0 121 137 135 153 123 156 0.76 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_36 - 442 T2SE PF00437.15 272 8.9e-37 119.3 0.0 1 1 1.2e-38 1.3e-36 118.8 0.0 10 261 93 347 84 358 0.85 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 Zeta_toxin PF06414.7 201 0.0016 10.4 1.1 1 2 0.0073 0.74 1.8 0.1 97 133 141 178 139 185 0.86 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_49 - 646 Zeta_toxin PF06414.7 201 0.0016 10.4 1.1 2 2 0.00043 0.043 5.8 0.0 19 52 250 283 239 298 0.78 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 Fer4_NifH PF00142.13 273 1.6e-08 27.0 0.0 1 1 3e-10 3.1e-08 26.0 0.0 7 49 14 56 9 87 0.85 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 AAA_16 PF13191.1 185 5.7e-05 16.1 0.0 1 1 2.7e-06 0.00014 14.8 0.0 34 87 17 84 15 149 0.69 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_36 - 442 AAA_16 PF13191.1 185 0.00027 13.8 0.0 1 1 1.1e-05 0.00054 12.9 0.0 24 51 210 237 200 261 0.86 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_36 - 442 AAA_23 PF13476.1 202 0.00015 15.1 3.3 1 2 0.014 1.4 2.1 0.6 101 150 7 54 3 135 0.69 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_36 - 442 AAA_23 PF13476.1 202 0.00015 15.1 3.3 2 2 1.5e-06 0.00015 15.1 3.3 5 44 189 236 186 241 0.84 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_36 - 442 AAA_18 PF13238.1 129 5.4e-05 16.5 1.1 1 1 1.1e-05 0.00053 13.2 0.0 1 41 213 266 213 317 0.66 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 AAA_18 PF13238.1 129 0.00053 13.2 1.1 1 1 3e-05 0.0015 11.7 0.0 2 38 251 284 251 326 0.71 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 CbiA PF01656.18 195 7.1e-35 113.1 0.0 1 1 8.7e-37 8.8e-35 112.8 0.0 1 194 9 246 9 247 0.79 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_49 - 646 AAA_14 PF13173.1 128 0.0004 13.2 0.5 1 2 0.00024 0.024 7.5 0.1 8 42 253 286 249 313 0.80 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_49 - 646 AAA_14 PF13173.1 128 0.0004 13.2 0.5 2 2 0.0054 0.54 3.1 0.1 50 79 493 527 432 559 0.58 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_56 - 286 Val_tRNA-synt_C PF10458.4 66 0.0096 9.0 11.4 1 2 0.00025 0.025 7.6 3.0 11 33 195 217 188 245 0.84 # 44402 # 45259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_56 - 286 Val_tRNA-synt_C PF10458.4 66 0.0096 9.0 11.4 2 2 0.0012 0.12 5.5 1.4 6 27 254 275 250 279 0.91 # 44402 # 45259 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.288 1_36 - 442 Sigma54_activat PF00158.21 168 9.1e-05 14.9 0.0 1 1 2.5e-06 0.00026 13.4 0.0 16 46 204 234 195 254 0.79 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 MMR_HSR1 PF01926.18 116 0.0004 13.3 0.0 1 1 3.2e-05 0.0016 11.3 0.0 4 91 252 358 250 390 0.58 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 MMR_HSR1 PF01926.18 116 0.00042 13.2 0.0 1 1 0.00013 0.0066 9.4 0.0 10 58 18 154 15 209 0.56 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_43 - 878 TraG-D_C PF12696.2 128 2e-33 107.9 0.1 1 1 4.5e-35 4.5e-33 106.8 0.1 1 125 589 704 589 707 0.88 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_82 - 336 BRAP2 PF07576.7 110 0.00011 14.7 0.1 1 1 2.3e-06 0.00024 13.6 0.1 43 74 280 311 260 315 0.85 # 64029 # 65036 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.325 1_6 - 289 AAA_31 PF13614.1 157 2.4e-12 40.0 0.5 1 2 6.7e-13 6.7e-11 35.3 0.4 3 134 9 159 8 179 0.75 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 AAA_31 PF13614.1 157 2.4e-12 40.0 0.5 2 2 0.044 4.4 0.1 0.0 80 119 159 198 153 201 0.84 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_49 - 646 NTPase_1 PF03266.10 168 0.00033 13.3 0.1 1 1 7.4e-06 0.00075 12.1 0.1 3 57 251 305 250 326 0.85 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_83 - 204 Methyltransf_26 PF13659.1 117 0.0011 11.9 0.0 1 1 1.6e-05 0.0017 11.4 0.0 63 107 83 127 36 130 0.82 # 65054 # 65665 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_36 - 442 FtsK_SpoIIIE PF01580.13 205 0.00011 14.6 0.0 1 1 3.8e-06 0.00019 13.8 0.0 24 66 196 238 187 255 0.82 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 FtsK_SpoIIIE PF01580.13 205 0.0014 11.1 1.0 1 1 5.1e-05 0.0026 10.2 0.1 41 64 250 273 228 276 0.85 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_49 - 646 Dynamin_N PF00350.18 168 0.00043 13.0 0.6 1 1 1.7e-05 0.0017 11.1 0.1 3 20 252 269 251 278 0.93 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_49 - 646 AAA_10 PF12846.2 304 3.3e-60 196.9 0.1 1 1 1.6e-61 5.5e-60 196.2 0.1 3 301 249 599 247 603 0.89 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_43 - 878 AAA_10 PF12846.2 304 4.6e-06 19.1 0.6 1 2 1.1e-05 0.00035 12.9 0.1 3 172 182 371 180 424 0.69 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 878 AAA_10 PF12846.2 304 4.6e-06 19.1 0.6 2 2 0.01 0.35 3.1 0.0 198 298 564 665 530 669 0.79 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_6 - 289 AAA_10 PF12846.2 304 5.3e-06 18.9 0.1 1 1 2e-07 6.7e-06 18.6 0.1 11 114 17 140 10 286 0.69 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_49 - 646 Zot PF05707.7 193 9.4e-07 21.4 0.2 1 2 0.048 4.8 -0.5 0.0 4 15 251 262 250 278 0.79 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_49 - 646 Zot PF05707.7 193 9.4e-07 21.4 0.2 2 2 5.9e-08 6e-06 18.7 0.1 29 129 454 557 445 558 0.66 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_36 - 442 DEAD PF00270.24 169 0.0001 14.7 0.0 1 1 1.9e-06 0.0002 13.8 0.0 12 51 207 244 200 362 0.85 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_43 - 878 TrwB_AAD_bind PF10412.4 386 1e-17 56.7 0.0 1 2 8.4e-07 4.2e-05 15.1 0.0 13 163 178 349 172 360 0.88 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 878 TrwB_AAD_bind PF10412.4 386 1e-17 56.7 0.0 2 2 4.5e-14 2.3e-12 39.1 0.0 217 364 557 704 541 719 0.79 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_36 - 442 TrwB_AAD_bind PF10412.4 386 6.8e-05 14.5 0.0 1 1 2.1e-06 0.00011 13.8 0.0 15 66 210 260 206 312 0.79 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_43 - 878 T4SS-DNA_transf PF02534.9 469 2.7e-43 141.0 3.6 1 2 2.4e-23 2.4e-21 68.7 0.4 46 258 182 413 140 418 0.74 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 878 T4SS-DNA_transf PF02534.9 469 2.7e-43 141.0 3.6 2 2 1.1e-24 1.1e-22 73.0 0.2 259 432 543 713 537 729 0.89 # 29493 # 32126 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.340 1_6 - 289 ArgK PF03308.11 267 1.9e-06 19.7 0.0 1 1 3.1e-08 3.1e-06 19.0 0.0 38 83 16 60 6 92 0.85 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_36 - 442 Pox_A32 PF04665.7 241 9.3e-05 14.7 0.1 1 1 1.9e-06 0.0002 13.6 0.1 9 45 206 242 200 258 0.83 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_36 - 442 RNA_helicase PF00910.17 107 0.00054 13.1 0.0 1 1 1.5e-05 0.0015 11.7 0.0 1 57 213 274 213 313 0.73 # 23241 # 24566 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.330 1_49 - 646 UPF0079 PF02367.12 123 0.00082 12.0 0.1 1 1 4.1e-05 0.0042 9.7 0.2 21 40 253 272 250 280 0.86 # 37437 # 39374 # 1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 289 AAA_25 PF13481.1 194 0.00032 13.1 0.0 1 2 1.9e-05 0.002 10.5 0.0 37 73 11 49 5 91 0.87 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 AAA_25 PF13481.1 194 0.00032 13.1 0.0 2 2 0.032 3.3 -0.0 0.0 130 150 132 150 100 154 0.82 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 1_6 - 289 AAA_5 PF07728.9 139 4.6e-06 19.3 0.0 1 1 8.5e-08 8.5e-06 18.5 0.0 9 67 17 79 15 121 0.86 # 1921 # 2787 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.309 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/37893321-3cf7-4d03-b9b8-094363f56cd6 # Target file: checkm_output/bins/pGCA_001941905.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001941905.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/37893321-3cf7-4d03-b9b8-094363f56cd6 checkm_output/bins/pGCA_001941905.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:29 2020 # [ok]