# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_40 - 289 MipZ PF09140.6 261 4.8e-15 48.4 0.1 1 2 2.5e-12 2.9e-10 32.7 0.1 3 56 9 62 7 92 0.89 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 MipZ PF09140.6 261 4.8e-15 48.4 0.1 2 2 1.5e-06 0.00017 13.8 0.0 78 125 122 169 96 179 0.84 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 YhjQ PF06564.7 244 2e-08 26.9 0.0 1 1 1.1e-09 1.3e-07 24.3 0.0 10 149 15 174 8 179 0.70 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_108 - 516 DUF2110 PF09883.4 225 0.0005 12.8 0.1 1 1 1.1e-05 0.0012 11.5 0.1 20 98 28 104 22 115 0.90 # 70411 # 71958 # -1 # ID=1_108;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_92 - 646 DUF87 PF01935.12 229 0.00029 13.8 1.6 1 1 4.2e-06 0.00049 13.1 0.1 28 79 252 299 250 360 0.83 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 444 AAA_22 PF13401.1 131 0.00023 14.5 0.0 1 1 8.8e-06 0.00051 13.3 0.0 4 27 212 235 208 319 0.72 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 AAA_22 PF13401.1 131 0.00089 12.5 0.1 1 1 8.3e-05 0.0048 10.2 0.1 6 28 249 271 244 297 0.88 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 ATP_bind_1 PF03029.12 238 1.9e-07 24.0 0.2 1 1 8.7e-09 1e-06 21.6 0.2 6 48 17 51 15 207 0.66 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 AAA_17 PF13207.1 121 3e-05 18.0 0.0 1 1 3.9e-06 0.00022 15.2 0.0 9 53 17 68 16 220 0.77 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 444 AAA_17 PF13207.1 121 0.00056 13.9 0.6 1 1 8.1e-05 0.0047 10.9 0.0 2 32 215 242 214 342 0.60 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 Miro PF08477.8 119 0.00012 15.7 0.4 1 1 3.6e-06 0.00042 14.0 0.1 3 51 251 299 250 329 0.82 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 MobB PF03205.9 140 0.00025 13.9 0.3 1 1 4.9e-06 0.00057 12.7 0.3 9 46 16 51 8 53 0.88 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 ArsA_ATPase PF02374.10 305 2.8e-09 29.5 0.0 1 2 1.1e-08 1.2e-06 20.8 0.0 8 43 14 49 7 69 0.90 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 ArsA_ATPase PF02374.10 305 2.8e-09 29.5 0.0 2 2 0.00024 0.027 6.5 0.0 121 137 135 153 123 156 0.76 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 444 T2SE PF00437.15 272 1e-36 119.3 0.0 1 1 1.3e-38 1.5e-36 118.8 0.0 10 261 95 349 86 360 0.85 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 Zeta_toxin PF06414.7 201 0.0019 10.4 1.1 1 2 0.0073 0.84 1.8 0.1 97 133 141 178 139 185 0.86 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_92 - 646 Zeta_toxin PF06414.7 201 0.0019 10.4 1.1 2 2 0.00043 0.05 5.8 0.0 19 52 250 283 239 298 0.78 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 Fer4_NifH PF00142.13 273 1.8e-08 27.0 0.0 1 1 3e-10 3.5e-08 26.0 0.0 7 49 14 56 9 87 0.85 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 AAA_16 PF13191.1 185 6.5e-05 16.1 0.0 1 1 2.7e-06 0.00016 14.8 0.0 34 87 17 84 15 149 0.69 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 444 AAA_16 PF13191.1 185 0.00032 13.8 0.0 1 1 1.1e-05 0.00063 12.9 0.0 24 51 212 239 202 263 0.86 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_3 - 444 AAA_23 PF13476.1 202 0.00017 15.0 3.3 1 2 0.012 1.4 2.3 0.5 101 150 9 56 3 137 0.70 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_3 - 444 AAA_23 PF13476.1 202 0.00017 15.0 3.3 2 2 1.5e-06 0.00017 15.0 3.3 5 44 191 238 188 243 0.84 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_3 - 444 AAA_18 PF13238.1 129 6.3e-05 16.4 1.2 1 1 1.1e-05 0.00061 13.2 0.0 1 41 215 268 215 319 0.66 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 AAA_18 PF13238.1 129 0.00061 13.2 1.1 1 1 3e-05 0.0018 11.7 0.0 2 38 251 284 251 326 0.71 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 CbiA PF01656.18 195 8.2e-35 113.1 0.0 1 1 8.7e-37 1e-34 112.8 0.0 1 194 9 246 9 247 0.79 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_92 - 646 AAA_14 PF13173.1 128 0.00046 13.2 0.5 1 2 0.00024 0.028 7.5 0.1 8 42 253 286 249 313 0.80 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_92 - 646 AAA_14 PF13173.1 128 0.00046 13.2 0.5 2 2 0.0054 0.62 3.1 0.1 50 79 493 527 432 559 0.58 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_85 - 286 Val_tRNA-synt_C PF10458.4 66 0.011 9.0 11.4 1 2 0.00025 0.029 7.6 3.0 11 33 195 217 188 245 0.84 # 56432 # 57289 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_85 - 286 Val_tRNA-synt_C PF10458.4 66 0.011 9.0 11.4 2 2 0.0012 0.14 5.5 1.4 6 27 254 275 250 279 0.91 # 56432 # 57289 # -1 # ID=1_85;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.287 1_3 - 444 Sigma54_activat PF00158.21 168 0.0001 14.9 0.0 1 1 2.6e-06 0.0003 13.4 0.0 16 46 206 236 197 256 0.79 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 MMR_HSR1 PF01926.18 116 0.00046 13.3 0.0 1 1 3.2e-05 0.0019 11.3 0.0 4 91 252 358 250 390 0.58 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 MMR_HSR1 PF01926.18 116 0.00049 13.2 0.0 1 1 0.00013 0.0076 9.4 0.0 10 58 18 154 15 209 0.56 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_107 - 88 TraG-D_C PF12696.2 128 1.7e-14 46.9 0.2 1 1 1.9e-16 2.2e-14 46.6 0.2 12 64 1 52 1 75 0.86 # 70133 # 70396 # -1 # ID=1_107;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.348 1_59 - 327 BRAP2 PF07576.7 110 0.00012 14.7 0.1 1 1 2.2e-06 0.00026 13.7 0.1 43 74 280 311 260 315 0.85 # 36648 # 37628 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.328 1_40 - 289 AAA_31 PF13614.1 157 2.8e-12 40.0 0.5 1 2 6.7e-13 7.7e-11 35.3 0.4 3 134 9 159 8 179 0.75 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 AAA_31 PF13614.1 157 2.8e-12 40.0 0.5 2 2 0.044 5.1 0.1 0.0 80 119 159 198 153 201 0.84 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_92 - 646 NTPase_1 PF03266.10 168 0.00038 13.3 0.1 1 1 7.4e-06 0.00086 12.1 0.1 3 57 251 305 250 326 0.85 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_58 - 204 Methyltransf_26 PF13659.1 117 0.0013 11.9 0.0 1 1 1.6e-05 0.0019 11.4 0.0 63 107 83 127 36 130 0.82 # 36019 # 36630 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.317 1_3 - 444 FtsK_SpoIIIE PF01580.13 205 0.00013 14.6 0.0 1 1 3.8e-06 0.00022 13.8 0.0 24 66 198 240 189 257 0.82 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 FtsK_SpoIIIE PF01580.13 205 0.0016 11.1 1.0 1 1 5.1e-05 0.003 10.2 0.1 41 64 250 273 228 276 0.85 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_92 - 646 Dynamin_N PF00350.18 168 0.0005 13.0 0.6 1 1 1.7e-05 0.002 11.1 0.1 3 20 252 269 251 278 0.93 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_92 - 646 AAA_10 PF12846.2 304 3.8e-60 196.9 0.1 1 1 1.6e-61 6.3e-60 196.2 0.1 3 301 249 599 247 603 0.89 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 AAA_10 PF12846.2 304 6.1e-06 18.9 0.1 1 1 2e-07 7.6e-06 18.6 0.1 11 114 17 140 10 286 0.69 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_108 - 516 AAA_10 PF12846.2 304 0.00011 14.8 0.1 1 1 3.7e-06 0.00014 14.4 0.1 3 173 104 294 102 347 0.69 # 70411 # 71958 # -1 # ID=1_108;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_92 - 646 Zot PF05707.7 193 1.1e-06 21.4 0.2 1 2 0.048 5.5 -0.5 0.0 4 15 251 262 250 278 0.79 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_92 - 646 Zot PF05707.7 193 1.1e-06 21.4 0.2 2 2 5.9e-08 6.9e-06 18.7 0.1 29 129 454 557 445 558 0.66 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_3 - 444 DEAD PF00270.24 169 0.00012 14.7 0.0 1 1 2e-06 0.00023 13.8 0.0 12 51 209 246 202 364 0.85 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_108 - 516 TrwB_AAD_bind PF10412.4 386 1.1e-05 17.2 0.0 1 1 3.2e-07 1.8e-05 16.5 0.0 13 163 100 271 94 283 0.88 # 70411 # 71958 # -1 # ID=1_108;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_3 - 444 TrwB_AAD_bind PF10412.4 386 7.8e-05 14.5 0.0 1 1 2.1e-06 0.00012 13.8 0.0 15 66 212 262 208 314 0.79 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_111 - 163 AAA_11 PF13086.1 236 0.0096 8.6 7.2 1 1 0.00012 0.014 8.0 7.2 63 134 17 122 12 159 0.58 # 72715 # 73203 # -1 # ID=1_111;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.305 1_108 - 516 T4SS-DNA_transf PF02534.9 469 3.8e-22 71.5 0.7 1 2 7.4e-24 8.6e-22 70.3 0.4 45 258 103 335 61 340 0.74 # 70411 # 71958 # -1 # ID=1_108;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_108 - 516 T4SS-DNA_transf PF02534.9 469 3.8e-22 71.5 0.7 2 2 0.061 7.1 -1.9 0.0 259 304 465 510 461 514 0.85 # 70411 # 71958 # -1 # ID=1_108;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.348 1_93 - 87 DWNN PF08783.6 74 0.00048 13.2 0.1 1 2 9.4e-05 0.011 8.9 0.0 10 55 4 48 1 55 0.87 # 64269 # 64529 # -1 # ID=1_93;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_93 - 87 DWNN PF08783.6 74 0.00048 13.2 0.1 2 2 0.0076 0.88 2.8 0.1 15 38 61 84 52 86 0.84 # 64269 # 64529 # -1 # ID=1_93;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.352 1_40 - 289 ArgK PF03308.11 267 2.2e-06 19.7 0.0 1 1 3.1e-08 3.6e-06 19.0 0.0 38 83 16 60 6 92 0.85 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_3 - 444 Pox_A32 PF04665.7 241 0.00011 14.7 0.1 1 1 2e-06 0.00023 13.6 0.1 9 45 208 244 202 260 0.83 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_3 - 444 RNA_helicase PF00910.17 107 0.00063 13.1 0.0 1 1 1.5e-05 0.0017 11.6 0.0 1 57 215 276 215 315 0.73 # 1215 # 2546 # -1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_92 - 646 UPF0079 PF02367.12 123 0.00094 12.0 0.1 1 1 4.1e-05 0.0048 9.7 0.2 21 40 253 272 250 280 0.86 # 62317 # 64254 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.337 1_40 - 289 AAA_25 PF13481.1 194 0.00036 13.1 0.0 1 2 1.9e-05 0.0022 10.5 0.0 37 73 11 49 5 91 0.87 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 AAA_25 PF13481.1 194 0.00036 13.1 0.0 2 2 0.032 3.8 -0.0 0.0 130 150 132 150 100 154 0.82 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 1_40 - 289 AAA_5 PF07728.9 139 5.3e-06 19.3 0.0 1 1 8.5e-08 9.8e-06 18.5 0.0 9 67 17 79 15 121 0.86 # 22987 # 23853 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.310 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2be3afbe-5f0c-4a73-a148-c5d11b1967ba # Target file: checkm_output/bins/pGCA_001941885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001941885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2be3afbe-5f0c-4a73-a148-c5d11b1967ba checkm_output/bins/pGCA_001941885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:29 2020 # [ok]