# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 195 MipZ PF09140.6 261 2.1e-08 23.1 1.7 1 2 3.7e-07 3.7e-06 15.8 0.1 3 49 3 48 1 72 0.86 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 195 MipZ PF09140.6 261 2.1e-08 23.1 1.7 2 2 0.00014 0.0014 7.3 0.2 101 137 78 114 59 146 0.84 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_9 - 1297 UvrD_C_2 PF13538.1 104 5.9e-06 16.1 0.0 1 1 1.8e-06 1.8e-05 14.6 0.0 4 100 796 899 793 903 0.70 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_22 PF13401.1 131 1.2e-05 15.2 0.0 1 1 4.6e-06 4.6e-05 13.3 0.0 5 125 546 661 542 667 0.68 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_8 - 195 ArsA_ATPase PF02374.10 305 1.4e-05 13.9 0.1 1 1 2.2e-06 2.2e-05 13.2 0.1 1 39 1 39 1 47 0.85 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_9 - 1297 PhoH PF02562.11 205 1.2e-06 17.5 0.1 1 2 0.0012 0.012 4.5 0.1 6 34 530 560 527 601 0.76 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 PhoH PF02562.11 205 1.2e-06 17.5 0.1 2 2 2.3e-05 0.00023 10.0 0.0 120 177 625 683 610 702 0.78 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_8 - 195 VirC1 PF07015.6 231 2.9e-13 39.0 0.2 1 2 2e-09 2e-08 23.2 0.1 4 54 3 53 1 57 0.93 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 195 VirC1 PF07015.6 231 2.9e-13 39.0 0.2 2 2 1.3e-06 1.3e-05 14.0 0.0 88 131 80 123 72 133 0.80 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_9 - 1297 AAA_16 PF13191.1 185 1.1e-05 15.1 1.8 1 2 0.016 0.16 1.5 0.1 72 168 291 386 260 401 0.65 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_16 PF13191.1 185 1.1e-05 15.1 1.8 2 2 1.8e-05 0.00018 11.2 0.1 14 56 535 577 530 684 0.79 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_8 - 195 CbiA PF01656.18 195 9.7e-26 80.0 0.4 1 1 1.5e-25 1.5e-24 76.1 0.4 1 193 3 166 3 168 0.74 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 195 AAA_31 PF13614.1 157 3.5e-05 13.4 0.1 1 2 0.00027 0.0027 7.3 0.0 3 40 3 40 1 45 0.84 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 195 AAA_31 PF13614.1 157 3.5e-05 13.4 0.1 2 2 0.0028 0.028 4.0 0.0 122 155 80 112 75 114 0.89 # 6834 # 7418 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_9 - 1297 AAA_30 PF13604.1 196 2.8e-61 196.1 7.6 1 1 2.8e-62 2.8e-61 196.1 7.6 2 195 529 730 528 731 0.97 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_19 PF13245.1 76 9.1e-13 37.6 4.2 1 3 0.0028 0.028 4.0 0.0 35 73 105 141 79 144 0.81 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_19 PF13245.1 76 9.1e-13 37.6 4.2 2 3 1.4e-10 1.4e-09 27.4 1.0 11 75 546 604 535 605 0.83 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_19 PF13245.1 76 9.1e-13 37.6 4.2 3 3 0.0019 0.019 4.5 0.1 36 62 742 769 712 786 0.75 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_11 PF13086.1 236 1.9e-09 27.1 4.8 1 3 6.2e-05 0.00062 9.0 0.0 2 98 529 611 528 621 0.84 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_11 PF13086.1 236 1.9e-09 27.1 4.8 2 3 1.1e-07 1.1e-06 18.0 0.0 194 231 626 666 614 669 0.81 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 AAA_11 PF13086.1 236 1.9e-09 27.1 4.8 3 3 0.078 0.78 -1.2 1.0 119 157 1052 1107 1004 1135 0.55 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_9 - 1297 PIF1 PF05970.9 364 1.2e-08 23.9 0.0 1 1 2e-09 2e-08 23.1 0.0 2 156 529 667 528 707 0.76 # 7525 # 11415 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bb294d87-76b4-40df-aa98-2c18858c8b7c # Target file: checkm_output/bins/pGCA_001941565.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001941565.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bb294d87-76b4-40df-aa98-2c18858c8b7c checkm_output/bins/pGCA_001941565.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:23 2020 # [ok]