# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_7 - 254 Methyltransf_8 PF05148.10 219 2.8e-07 23.6 0.0 1 1 6.6e-09 8.3e-07 22.0 0.0 67 157 51 153 42 158 0.72 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_7 - 254 Methyltransf_12 PF08242.7 99 6.3e-05 16.7 0.0 1 1 1.1e-06 0.00014 15.6 0.0 2 99 62 150 61 150 0.82 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_9 - 221 MipZ PF09140.6 261 4.9e-10 32.1 0.6 1 2 3.5e-09 4.4e-07 22.4 0.2 2 44 4 44 3 51 0.86 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 MipZ PF09140.6 261 4.9e-10 32.1 0.6 2 2 7.9e-05 0.0098 8.1 0.0 96 140 77 121 57 160 0.71 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 YhjQ PF06564.7 244 0.0015 11.1 4.0 1 3 0.00018 0.022 7.3 0.2 3 38 4 38 1 43 0.84 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 YhjQ PF06564.7 244 0.0015 11.1 4.0 2 3 0.0075 0.94 1.9 0.0 118 147 80 109 62 124 0.78 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 YhjQ PF06564.7 244 0.0015 11.1 4.0 3 3 0.0083 1 1.8 0.1 204 233 177 206 160 216 0.85 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 1_23 - 161 SSB PF00436.20 104 2.1e-40 130.1 0.2 1 1 3.3e-42 2.1e-40 130.1 0.2 1 104 9 110 9 110 0.98 # 10122 # 10604 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.381 1_55 - 111 SSB PF00436.20 104 2.4e-11 36.7 0.1 1 1 4.3e-13 2.7e-11 36.5 0.1 3 100 7 99 5 103 0.82 # 32640 # 32972 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.300 2_7 - 254 Methyltransf_18 PF12847.2 112 6.1e-06 20.0 0.1 1 1 2.9e-06 0.00036 14.4 0.1 2 109 57 152 56 155 0.60 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_61 - 624 DUF87 PF01935.12 229 1.9e-09 30.9 0.4 1 1 4.8e-11 6e-09 29.2 0.4 11 184 234 422 224 465 0.70 # 37977 # 39848 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 2_7 - 254 MetW PF07021.7 193 0.00043 12.9 0.0 1 1 4.9e-06 0.00061 12.4 0.0 12 103 55 145 42 151 0.77 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_2 - 425 AAA_22 PF13401.1 131 0.0012 12.2 1.0 1 2 0.024 3 1.2 0.1 19 68 5 53 1 86 0.45 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 425 AAA_22 PF13401.1 131 0.0012 12.2 1.0 2 2 0.0001 0.013 8.9 0.1 3 37 191 233 189 367 0.65 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_7 - 254 Methyltransf_11 PF08241.7 95 7.7e-14 45.3 0.0 1 1 1.2e-15 1.5e-13 44.3 0.0 2 95 62 152 61 152 0.94 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_9 - 221 ArsA_ATPase PF02374.10 305 7.9e-05 15.0 0.3 1 1 1e-06 0.00013 14.3 0.3 9 35 11 36 2 46 0.81 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 1_2 - 425 T2SE PF00437.15 272 2.2e-28 92.1 0.0 1 1 2.6e-30 3.2e-28 91.5 0.0 7 254 72 319 67 336 0.84 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 425 Zeta_toxin PF06414.7 201 3e-05 16.4 0.0 1 1 4.9e-07 6.1e-05 15.4 0.0 16 58 192 252 185 320 0.70 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_73 - 123 Ribosomal_S7 PF00177.16 148 0.00029 13.7 1.3 1 1 4.5e-06 0.00056 12.7 1.2 21 69 41 93 12 99 0.80 # 48365 # 48733 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.295 2_9 - 221 VirC1 PF07015.6 231 1.3e-07 24.1 0.1 1 1 1.5e-09 1.9e-07 23.6 0.1 3 184 4 180 2 212 0.82 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 Fer4_NifH PF00142.13 273 0.001 11.5 0.0 1 1 1.3e-05 0.0016 10.9 0.0 8 39 11 41 4 53 0.84 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 CbiA PF01656.18 195 5.6e-25 81.1 0.1 1 1 1.2e-26 1.5e-24 79.7 0.1 1 181 5 168 5 180 0.83 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_7 - 254 Methyltransf_25 PF13649.1 101 5.9e-07 23.1 0.0 1 1 9.2e-09 1.2e-06 22.1 0.0 1 101 60 148 60 148 0.88 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_7 - 254 Ubie_methyltran PF01209.13 233 0.00047 12.5 0.0 1 1 8.4e-06 0.0011 11.4 0.0 41 156 50 157 43 166 0.79 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_50 - 789 TraG-D_C PF12696.2 128 3.3e-30 97.8 0.0 1 1 6.7e-32 8.4e-30 96.5 0.0 1 127 419 535 419 536 0.90 # 24075 # 26441 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.314 2_9 - 221 AAA_31 PF13614.1 157 2.9e-07 23.8 0.2 1 2 2.3e-08 2.9e-06 20.5 0.1 2 39 4 40 3 46 0.89 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 AAA_31 PF13614.1 157 2.9e-07 23.8 0.2 2 2 0.018 2.3 1.4 0.0 118 152 80 113 52 118 0.79 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 1_49 - 351 Rho_RNA_bind PF07497.7 78 0.00015 14.6 0.2 1 1 3.7e-06 0.00046 13.1 0.1 11 67 79 134 70 143 0.87 # 22943 # 23995 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.309 2_7 - 254 Methyltransf_26 PF13659.1 117 0.00082 12.6 0.4 1 1 2.4e-05 0.003 10.8 0.4 1 114 57 153 57 155 0.83 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 2_7 - 254 MTS PF05175.9 170 9.4e-07 21.6 0.0 1 1 1.9e-08 2.4e-06 20.2 0.0 21 71 46 96 42 114 0.88 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_2 - 425 ABC_tran PF00005.22 137 0.00024 14.7 0.0 1 1 4.7e-06 0.00059 13.4 0.0 8 47 189 228 183 327 0.83 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_9 - 221 AAA_19 PF13245.1 76 0.00012 15.0 6.2 1 2 0.00011 0.013 8.5 0.1 20 54 13 42 11 52 0.85 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 2_9 - 221 AAA_19 PF13245.1 76 0.00012 15.0 6.2 2 2 0.00024 0.031 7.3 2.2 6 65 75 127 70 175 0.72 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 1_61 - 624 AAA_10 PF12846.2 304 8.3e-49 159.8 0.4 1 1 2e-50 1.2e-48 159.2 0.4 1 302 246 566 246 568 0.93 # 37977 # 39848 # -1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.331 1_50 - 789 AAA_10 PF12846.2 304 2e-16 53.5 1.4 1 1 4.7e-18 2.9e-16 52.9 0.1 1 302 166 500 166 502 0.79 # 24075 # 26441 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.314 2_1 - 881 ResIII PF04851.10 184 0.00053 13.1 0.0 1 1 7.8e-06 0.00098 12.2 0.0 26 87 140 210 113 231 0.85 # 3 # 2645 # 1 # ID=2_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.690 2_7 - 254 Methyltransf_31 PF13847.1 152 2.2e-06 20.6 0.0 1 1 3.8e-08 4.8e-06 19.5 0.0 4 112 57 156 54 195 0.83 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_2 - 425 DEAD PF00270.24 169 5.9e-05 15.8 0.3 1 2 0.00027 0.033 6.9 0.4 54 128 8 73 5 99 0.82 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_2 - 425 DEAD PF00270.24 169 5.9e-05 15.8 0.3 2 2 0.00034 0.042 6.5 0.0 11 30 189 208 183 257 0.86 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_50 - 789 TrwB_AAD_bind PF10412.4 386 1e-27 89.9 0.0 1 2 5.2e-29 6.5e-27 87.3 0.0 7 376 158 545 153 552 0.81 # 24075 # 26441 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.314 1_50 - 789 TrwB_AAD_bind PF10412.4 386 1e-27 89.9 0.0 2 2 0.055 6.8 -1.7 0.1 316 357 655 695 652 709 0.77 # 24075 # 26441 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.314 1_50 - 789 T4SS-DNA_transf PF02534.9 469 6.2e-75 245.7 3.0 1 1 4.9e-77 6.2e-75 245.7 3.0 45 450 167 568 114 596 0.86 # 24075 # 26441 # -1 # ID=1_50;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.314 1_2 - 425 Pox_A32 PF04665.7 241 9.6e-05 15.0 0.2 1 1 2.2e-06 0.00027 13.5 0.0 8 63 187 241 183 259 0.80 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 2_7 - 254 Methyltransf_23 PF13489.1 161 4.7e-13 42.4 0.0 1 1 5.8e-15 7.3e-13 41.8 0.0 20 157 54 189 38 192 0.79 # 4535 # 5296 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.589 1_2 - 425 UPF0079 PF02367.12 123 0.00051 12.9 0.1 1 1 1.3e-05 0.0017 11.3 0.0 11 36 188 213 181 224 0.80 # 203 # 1477 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.324 1_28 - 142 Nup35_RRM PF05172.8 101 0.00029 13.8 0.1 1 1 4.2e-06 0.00053 13.0 0.1 5 66 43 107 33 112 0.82 # 12296 # 12721 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.305 1_23 - 161 tRNA_anti-codon PF01336.20 75 3.7e-06 20.0 0.0 1 1 5.2e-08 6.5e-06 19.2 0.0 27 72 54 107 32 110 0.82 # 10122 # 10604 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.381 2_9 - 221 AAA_25 PF13481.1 194 9.4e-06 18.3 1.3 1 1 2.1e-07 2.6e-05 16.9 0.4 42 89 12 47 11 87 0.68 # 6412 # 7074 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.701 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3955fec2-aad5-467c-a2fa-891365d960b7 # Target file: checkm_output/bins/pGCA_001938665.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001938665.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3955fec2-aad5-467c-a2fa-891365d960b7 checkm_output/bins/pGCA_001938665.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:25 2020 # [ok]