# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_9 - 229 cobW PF02492.14 178 0.00086 12.0 0.1 1 1 1.1e-05 0.0014 11.3 0.1 3 19 38 54 36 64 0.86 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 Rad17 PF03215.10 519 5.5e-05 15.2 0.0 1 1 4.3e-07 5.5e-05 15.2 0.0 26 89 15 80 6 198 0.78 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 1_17 - 451 Terminase_6 PF03237.10 384 1.4e-48 158.8 0.0 1 1 1.3e-50 1.7e-48 158.5 0.0 1 379 65 428 65 433 0.93 # 15650 # 17002 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_14 - 252 MipZ PF09140.6 261 6.2e-12 38.3 0.1 1 1 2.4e-11 7.9e-10 31.5 0.1 2 129 8 154 7 177 0.67 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 2_4 - 255 MipZ PF09140.6 261 9.7e-12 37.7 0.1 1 1 1.3e-11 4.4e-10 32.3 0.1 2 129 8 155 7 197 0.67 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_3 - 255 MipZ PF09140.6 261 3.8e-10 32.5 0.2 1 1 7.1e-10 2.3e-08 26.7 0.2 2 63 8 67 7 157 0.60 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 5_2 - 256 MipZ PF09140.6 261 2.7e-09 29.7 0.0 1 1 7.4e-10 2.4e-08 26.6 0.0 2 129 4 149 3 171 0.68 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 5_2 - 256 YhjQ PF06564.7 244 8.3e-05 15.3 0.1 1 1 2.2e-05 0.00093 11.8 0.1 3 212 4 226 2 253 0.61 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 2_4 - 255 YhjQ PF06564.7 244 0.00016 14.3 0.0 1 1 5.2e-06 0.00022 13.9 0.0 3 144 8 151 6 160 0.72 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 1_14 - 252 YhjQ PF06564.7 244 0.00071 12.2 0.1 1 1 8.4e-05 0.0036 9.9 0.1 2 148 7 154 6 163 0.64 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 3_9 - 229 NB-ARC PF00931.17 287 0.00019 13.6 0.0 1 1 2e-06 0.00026 13.2 0.0 17 60 33 79 18 139 0.75 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_22 PF13401.1 131 9.8e-06 19.0 0.0 1 2 1.4e-06 9.1e-05 15.9 0.0 3 24 34 55 31 93 0.91 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_22 PF13401.1 131 9.8e-06 19.0 0.0 2 2 0.074 4.8 0.6 0.0 88 123 158 204 112 212 0.59 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 2_23 - 484 AAA_22 PF13401.1 131 0.0044 10.4 2.7 1 2 0.00058 0.038 7.4 0.3 72 101 164 196 131 222 0.69 # 23408 # 24859 # 1 # ID=2_23;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 2_23 - 484 AAA_22 PF13401.1 131 0.0044 10.4 2.7 2 2 0.02 1.3 2.4 0.2 82 111 238 266 229 294 0.79 # 23408 # 24859 # 1 # ID=2_23;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 2_4 - 255 ATP_bind_1 PF03029.12 238 1.3e-05 18.0 0.0 1 1 1.6e-07 2.1e-05 17.4 0.0 6 49 17 60 15 132 0.79 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 2_4 - 255 SRP54 PF00448.17 196 0.0012 11.6 0.0 1 2 0.00039 0.051 6.2 0.0 11 39 17 45 6 85 0.88 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 2_4 - 255 SRP54 PF00448.17 196 0.0012 11.6 0.0 2 2 0.0027 0.35 3.5 0.0 78 92 119 133 87 145 0.72 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_9 - 229 AAA_17 PF13207.1 121 2.5e-06 21.6 0.0 1 1 5.5e-08 7.2e-06 20.1 0.0 2 32 38 65 37 96 0.74 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_21 PF13304.1 303 3.4e-09 30.3 3.0 1 2 3.5e-06 0.00045 13.5 0.7 6 54 42 90 40 100 0.75 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_21 PF13304.1 303 3.4e-09 30.3 3.0 2 2 1.3e-07 1.7e-05 18.1 0.6 189 301 97 208 67 210 0.69 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 2_22 - 513 NAD_synthase PF02540.12 242 5.5e-13 41.6 0.2 1 2 8.3e-12 1.1e-09 30.8 0.0 4 96 201 292 198 301 0.88 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 2_22 - 513 NAD_synthase PF02540.12 242 5.5e-13 41.6 0.2 2 2 6.3e-05 0.0081 8.3 0.0 148 177 360 389 358 419 0.94 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 2_4 - 255 ArsA_ATPase PF02374.10 305 1.1e-11 37.6 1.2 1 1 1.6e-12 5.2e-11 35.3 0.3 7 136 13 134 6 140 0.74 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_3 - 255 ArsA_ATPase PF02374.10 305 1.2e-07 24.2 0.2 1 1 1.3e-08 4.1e-07 22.5 0.2 8 136 14 133 7 146 0.77 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 1_14 - 252 ArsA_ATPase PF02374.10 305 6.2e-07 22.0 0.7 1 1 1.7e-07 5.5e-06 18.8 0.7 7 136 13 133 6 136 0.60 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 5_2 - 256 ArsA_ATPase PF02374.10 305 7e-06 18.5 1.1 1 1 1e-06 3.3e-05 16.3 0.9 6 137 8 129 3 195 0.79 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_17 - 451 PhoH PF02562.11 205 0.00017 14.1 0.0 1 1 1.4e-05 0.0009 11.8 0.0 5 151 45 195 43 208 0.72 # 15650 # 17002 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 3_9 - 229 PhoH PF02562.11 205 0.00018 14.1 0.0 1 1 4.7e-06 0.00031 13.3 0.0 14 48 30 65 20 68 0.78 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 T2SE PF00437.15 272 3.8e-07 22.5 0.0 1 1 5e-09 6.5e-07 21.7 0.0 121 149 28 56 7 74 0.84 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 2_4 - 255 AAA_26 PF13500.1 199 0.00042 13.2 0.3 1 1 6.1e-05 0.0079 9.1 0.3 3 32 9 38 7 223 0.62 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_9 - 229 Zeta_toxin PF06414.7 201 0.00015 14.2 0.0 1 1 1.6e-06 0.00021 13.7 0.0 7 38 25 57 19 87 0.80 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 SMC_N PF02463.14 220 9.9e-08 24.7 0.2 1 1 2.3e-09 3e-07 23.1 0.2 23 212 34 219 22 222 0.74 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_3 - 255 VirC1 PF07015.6 231 5.4e-07 22.1 0.4 1 2 9.7e-07 4.2e-05 16.0 0.0 3 50 8 54 6 77 0.80 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 3_3 - 255 VirC1 PF07015.6 231 5.4e-07 22.1 0.4 2 2 0.0045 0.19 4.0 0.1 83 150 123 186 108 199 0.72 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 2_4 - 255 VirC1 PF07015.6 231 2e-06 20.3 0.0 1 2 5e-07 2.2e-05 16.9 0.0 2 50 7 55 6 73 0.83 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 2_4 - 255 VirC1 PF07015.6 231 2e-06 20.3 0.0 2 2 0.032 1.4 1.2 0.0 82 112 123 153 107 176 0.78 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 1_14 - 252 VirC1 PF07015.6 231 1.3e-05 17.6 4.5 1 3 9.1e-06 0.00039 12.8 0.1 2 40 7 44 6 53 0.76 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 1_14 - 252 VirC1 PF07015.6 231 1.3e-05 17.6 4.5 2 3 0.043 1.9 0.7 0.1 99 117 80 98 58 112 0.79 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 1_14 - 252 VirC1 PF07015.6 231 1.3e-05 17.6 4.5 3 3 0.0027 0.12 4.7 0.1 83 142 123 178 101 218 0.71 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 2_4 - 255 Fer4_NifH PF00142.13 273 1.1e-08 27.9 0.1 1 2 3.4e-09 1.1e-07 24.6 0.0 8 55 15 62 7 89 0.85 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 2_4 - 255 Fer4_NifH PF00142.13 273 1.1e-08 27.9 0.1 2 2 0.046 1.5 1.2 0.0 186 241 190 243 180 250 0.67 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_3 - 255 Fer4_NifH PF00142.13 273 1.5e-05 17.5 0.2 1 1 1.1e-06 3.4e-05 16.4 0.1 8 76 15 84 9 93 0.76 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 1_14 - 252 Fer4_NifH PF00142.13 273 1.8e-05 17.3 0.0 1 1 1e-06 3.4e-05 16.4 0.0 8 48 15 54 7 82 0.82 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 5_2 - 256 Fer4_NifH PF00142.13 273 0.0022 10.4 1.6 1 2 0.00035 0.011 8.1 0.0 8 48 11 50 5 84 0.82 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 5_2 - 256 Fer4_NifH PF00142.13 273 0.0022 10.4 1.6 2 2 0.053 1.7 0.9 0.5 190 247 190 248 159 254 0.78 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 2_22 - 513 QueC PF06508.8 210 2.9e-06 20.0 0.0 1 1 4.4e-07 5.7e-05 15.7 0.0 2 176 218 381 217 387 0.72 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 3_9 - 229 AAA_16 PF13191.1 185 0.00012 15.3 0.0 1 1 1.2e-06 0.00016 15.0 0.0 22 44 33 55 20 133 0.88 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_23 PF13476.1 202 2.8e-07 24.3 0.5 1 1 8.4e-09 1.1e-06 22.4 0.5 11 51 24 67 21 222 0.54 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_18 PF13238.1 129 2e-05 18.2 0.4 1 1 6.3e-07 4.1e-05 17.2 0.2 1 22 38 59 38 134 0.73 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_3 - 255 AAA_18 PF13238.1 129 0.0021 11.7 3.7 1 2 5.6e-05 0.0037 10.9 0.7 8 96 17 118 16 214 0.78 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 3_3 - 255 AAA_18 PF13238.1 129 0.0021 11.7 3.7 2 2 0.096 6.2 0.4 0.2 38 78 214 253 206 254 0.71 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 1_14 - 252 CbiA PF01656.18 195 1.1e-35 116.1 0.0 1 1 4.1e-37 1.3e-35 115.8 0.0 1 174 9 202 9 218 0.84 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 2_4 - 255 CbiA PF01656.18 195 4.6e-35 114.0 0.1 1 1 1.7e-36 5.5e-35 113.8 0.1 1 193 9 220 9 222 0.79 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 3_3 - 255 CbiA PF01656.18 195 5.8e-34 110.5 0.2 1 1 2.2e-35 7.2e-34 110.1 0.2 1 166 9 194 9 225 0.85 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 5_2 - 256 CbiA PF01656.18 195 1.5e-30 99.3 0.0 1 1 5.8e-32 1.9e-30 99.0 0.0 1 193 5 219 5 239 0.75 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 3_9 - 229 AAA_14 PF13173.1 128 0.00027 14.2 0.1 1 1 5.3e-06 0.00069 12.8 0.0 2 23 35 56 34 110 0.68 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 SRPRB PF09439.5 181 0.0003 13.3 0.2 1 2 9.7e-06 0.0013 11.3 0.0 2 30 34 62 33 84 0.72 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 SRPRB PF09439.5 181 0.0003 13.3 0.2 2 2 0.044 5.8 -0.7 0.0 93 118 178 203 165 220 0.79 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_29 PF13555.1 62 1.5e-05 17.8 0.1 1 1 2.2e-07 2.8e-05 16.9 0.1 19 41 32 53 21 71 0.76 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 2_22 - 513 PAPS_reduct PF01507.14 174 1.3e-07 24.9 0.0 1 1 2e-09 2.6e-07 23.9 0.0 2 161 218 388 217 398 0.75 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 3_9 - 229 DUF258 PF03193.11 161 1.3e-06 20.9 0.1 1 1 2.1e-08 2.7e-06 19.9 0.1 26 68 25 68 6 75 0.84 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 2_22 - 513 Asn_synthase PF00733.16 255 0.00015 14.5 0.0 1 2 0.028 3.6 0.2 0.0 16 27 44 55 38 60 0.84 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 2_22 - 513 Asn_synthase PF00733.16 255 0.00015 14.5 0.0 2 2 9e-06 0.0012 11.7 0.0 10 58 209 256 198 314 0.81 # 21849 # 23387 # 1 # ID=2_22;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.323 1_14 - 252 AAA_31 PF13614.1 157 1.6e-15 50.6 0.6 1 1 9.7e-17 3.1e-15 49.7 0.6 1 154 7 159 7 162 0.84 # 12932 # 13687 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-12bp;gc_cont=0.270 3_3 - 255 AAA_31 PF13614.1 157 3.8e-14 46.2 0.8 1 1 4.4e-15 1.4e-13 44.3 0.8 2 152 8 157 7 162 0.71 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 2_4 - 255 AAA_31 PF13614.1 157 4.1e-14 46.1 0.4 1 1 2.1e-15 7e-14 45.3 0.4 1 138 7 144 7 162 0.81 # 3824 # 4588 # -1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.308 5_2 - 256 AAA_31 PF13614.1 157 3.8e-13 42.9 0.1 1 1 2.7e-14 8.7e-13 41.8 0.1 2 150 4 150 3 157 0.78 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 3_9 - 229 AAA_33 PF13671.1 143 0.0014 11.7 0.0 1 1 1.9e-05 0.0024 11.0 0.0 1 17 37 53 37 84 0.89 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_30 PF13604.1 196 0.00089 12.1 0.0 1 1 1.1e-05 0.0015 11.4 0.0 16 38 33 55 26 65 0.84 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 ABC_tran PF00005.22 137 1.3e-28 93.3 0.0 1 1 1.2e-30 1.6e-28 93.0 0.0 2 137 26 174 25 174 0.87 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_19 PF13245.1 76 0.0008 12.5 0.0 1 1 1.2e-05 0.0016 11.6 0.0 10 31 35 55 28 58 0.81 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_10 PF12846.2 304 9.9e-05 15.1 1.3 1 2 1.5e-06 0.00019 14.2 0.4 5 21 39 55 37 67 0.86 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 AAA_10 PF12846.2 304 9.9e-05 15.1 1.3 2 2 0.05 6.5 -0.7 0.0 162 192 108 141 70 207 0.63 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 DEAD PF00270.24 169 0.00019 14.3 0.0 1 1 2e-06 0.00026 13.8 0.0 8 33 28 54 23 203 0.83 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_3 - 255 CmcI PF04989.7 206 1.6e-05 17.5 0.2 1 1 5.2e-07 3.4e-05 16.5 0.1 32 96 5 70 1 108 0.80 # 1833 # 2597 # -1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.259 2_23 - 484 CmcI PF04989.7 206 0.00035 13.2 0.8 1 1 9.7e-06 0.00063 12.3 0.8 60 129 192 262 171 269 0.76 # 23408 # 24859 # 1 # ID=2_23;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.345 3_9 - 229 AAA_11 PF13086.1 236 0.00041 13.2 0.0 1 1 4.2e-06 0.00055 12.8 0.0 9 43 27 60 23 178 0.75 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 5_2 - 256 ParA PF10609.4 81 0.001 12.2 0.0 1 1 1.4e-05 0.0019 11.4 0.0 2 37 120 152 119 184 0.79 # 614 # 1381 # -1 # ID=5_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.294 1_17 - 451 Terminase_3 PF04466.8 387 4.4e-12 39.0 0.7 1 1 4.8e-14 6.2e-12 38.5 0.7 5 242 64 297 62 344 0.86 # 15650 # 17002 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 3_9 - 229 RNA_helicase PF00910.17 107 6.1e-05 16.5 0.0 1 1 1.5e-06 0.0002 14.8 0.0 1 19 38 56 38 87 0.87 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 UPF0079 PF02367.12 123 0.00026 13.9 0.0 1 1 3.8e-06 0.0005 13.0 0.0 6 34 26 54 21 72 0.82 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 NACHT PF05729.7 166 6.2e-05 16.0 0.0 1 1 8.2e-07 0.00011 15.2 0.0 2 19 37 54 36 90 0.90 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 1_17 - 451 AAA_28 PF13521.1 163 0.00045 13.5 0.0 1 2 0.001 0.066 6.4 0.0 1 19 63 81 63 98 0.90 # 15650 # 17002 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 1_17 - 451 AAA_28 PF13521.1 163 0.00045 13.5 0.0 2 2 0.0038 0.25 4.6 0.0 68 102 186 219 163 240 0.76 # 15650 # 17002 # 1 # ID=1_17;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.290 3_9 - 229 AAA_28 PF13521.1 163 0.00099 12.4 0.0 1 1 2.4e-05 0.0016 11.7 0.0 2 20 38 56 37 82 0.89 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 3_9 - 229 APS_kinase PF01583.15 157 0.00036 13.5 0.1 1 1 7.9e-06 0.001 12.0 0.1 4 103 37 131 34 146 0.66 # 7811 # 8497 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.291 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/00b332f4-4af3-4d87-bede-f6f79465775f # Target file: checkm_output/bins/pGCA_001936255.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001936255.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/00b332f4-4af3-4d87-bede-f6f79465775f checkm_output/bins/pGCA_001936255.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:23 2020 # [ok]