# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 698 Mg_chelatase PF01078.16 207 1.6e-06 18.8 0.2 1 2 0.00071 0.026 5.1 0.0 20 65 114 159 94 177 0.72 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Mg_chelatase PF01078.16 207 1.6e-06 18.8 0.2 2 2 5.5e-05 0.002 8.7 0.1 24 44 448 468 442 607 0.88 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Torsin PF06309.6 127 0.00033 12.0 0.0 1 2 0.078 2.8 -0.7 0.0 59 117 122 180 113 192 0.79 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Torsin PF06309.6 127 0.00033 12.0 0.0 2 2 7.5e-05 0.0027 9.1 0.0 9 78 401 471 396 481 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 IstB_IS21 PF01695.12 178 1.8e-08 25.4 0.0 1 2 6e-06 0.00022 12.2 0.0 43 75 112 144 99 150 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 IstB_IS21 PF01695.12 178 1.8e-08 25.4 0.0 2 2 2e-05 0.00072 10.5 0.0 50 70 449 469 445 491 0.88 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_11 - 383 Methyltransf_18 PF12847.2 112 1e-06 20.8 0.1 1 1 6e-08 2.2e-06 19.8 0.1 2 76 183 257 182 300 0.73 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_15 - 501 Pyr_redox_2 PF07992.9 201 0.00014 13.2 0.0 1 2 0.00052 0.019 6.3 0.0 2 55 9 59 8 112 0.74 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_15 - 501 Pyr_redox_2 PF07992.9 201 0.00014 13.2 0.0 2 2 0.0017 0.061 4.6 0.0 62 128 178 257 143 267 0.66 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 698 AAA_2 PF07724.9 171 6.8e-51 164.0 5.4 1 2 4.2e-08 1.5e-06 19.7 0.2 5 109 118 228 114 244 0.86 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_2 PF07724.9 171 6.8e-51 164.0 5.4 2 2 4.4e-47 1.6e-45 146.5 0.0 1 169 444 599 444 601 0.97 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NB-ARC PF00931.17 287 1.2e-05 15.7 0.0 1 2 0.00018 0.0067 6.7 0.0 2 37 101 134 100 150 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NB-ARC PF00931.17 287 1.2e-05 15.7 0.0 2 2 0.00039 0.014 5.6 0.0 23 76 450 501 439 547 0.69 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_22 PF13401.1 131 1.1e-14 46.1 0.0 1 2 2.7e-08 9.9e-07 20.5 0.0 8 101 120 202 113 242 0.83 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_22 PF13401.1 131 1.1e-14 46.1 0.0 2 2 8.4e-09 3e-07 22.1 0.0 5 116 447 547 444 565 0.86 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_11 - 383 Methyltransf_11 PF08241.7 95 6.1e-05 15.0 0.0 1 1 7.8e-06 0.00028 12.9 0.0 3 50 189 238 187 257 0.86 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 698 SRP54 PF00448.17 196 5.1e-06 17.5 0.1 1 2 8e-05 0.0029 8.5 0.0 5 76 120 196 116 202 0.72 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 SRP54 PF00448.17 196 5.1e-06 17.5 0.1 2 2 0.00045 0.016 6.1 0.0 4 23 449 468 447 487 0.79 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 DNA_pol3_delta2 PF13177.1 162 0.00019 12.6 0.0 1 2 0.012 0.44 1.6 0.0 16 48 113 145 104 212 0.82 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 DNA_pol3_delta2 PF13177.1 162 0.00019 12.6 0.0 2 2 0.00026 0.0092 7.1 0.0 20 49 447 476 420 545 0.66 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_3 PF07726.6 131 8.6e-07 20.1 0.2 1 2 0.0097 0.35 2.0 0.0 4 23 121 140 119 163 0.89 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_3 PF07726.6 131 8.6e-07 20.1 0.2 2 2 1.1e-06 4e-05 14.7 0.0 38 111 491 568 448 571 0.62 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_17 PF13207.1 121 3.6e-08 25.8 5.5 1 2 0.0011 0.019 7.3 0.0 3 65 120 187 119 203 0.67 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_17 PF13207.1 121 3.6e-08 25.8 5.5 2 2 8.6e-06 0.00015 14.0 1.7 3 49 450 504 449 696 0.79 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 225 AAA_17 PF13207.1 121 1.9e-06 20.2 0.9 1 1 1.5e-07 2.8e-06 19.7 0.9 23 113 24 122 20 205 0.85 # 12445 # 13119 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.344 1_11 - 383 ADH_zinc_N_2 PF13602.1 127 6.3e-05 15.4 0.0 1 1 5.1e-06 0.00018 13.9 0.0 14 117 240 369 226 373 0.58 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 698 MobB PF03205.9 140 1.5e-06 19.5 2.4 1 2 1.9e-05 0.00069 10.8 0.0 5 39 121 154 119 167 0.85 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 MobB PF03205.9 140 1.5e-06 19.5 2.4 2 2 0.00021 0.0076 7.4 0.0 4 20 450 466 448 480 0.88 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_27 - 346 ADH_zinc_N PF00107.21 130 7.3e-29 91.4 0.0 1 1 6.7e-30 1.2e-28 90.7 0.0 1 128 178 304 178 306 0.98 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_11 - 383 ADH_zinc_N PF00107.21 130 1.2e-17 55.2 0.1 1 2 9e-18 1.6e-16 51.5 0.1 1 67 193 260 193 268 0.92 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_11 - 383 ADH_zinc_N PF00107.21 130 1.2e-17 55.2 0.1 2 2 0.037 0.66 1.0 0.0 72 112 285 325 279 342 0.80 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 698 PhoH PF02562.11 205 9.2e-06 16.4 0.2 1 3 0.00066 0.024 5.3 0.0 12 42 107 139 97 203 0.75 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 PhoH PF02562.11 205 9.2e-06 16.4 0.2 2 3 0.083 3 -1.6 0.0 165 195 378 408 366 415 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 PhoH PF02562.11 205 9.2e-06 16.4 0.2 3 3 0.0002 0.007 7.0 0.0 23 48 450 475 441 482 0.89 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Zeta_toxin PF06414.7 201 2.2e-07 21.6 1.8 1 3 0.00081 0.029 4.9 0.1 5 44 104 144 100 152 0.80 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Zeta_toxin PF06414.7 201 2.2e-07 21.6 1.8 2 3 0.0077 0.28 1.7 0.2 83 118 332 367 327 371 0.92 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Zeta_toxin PF06414.7 201 2.2e-07 21.6 1.8 3 3 5e-06 0.00018 12.1 0.0 10 56 439 488 429 524 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 592 NAD_binding_8 PF13450.1 68 1.4e-07 23.0 0.0 1 1 1.9e-08 3.3e-07 21.8 0.0 2 65 28 94 27 97 0.73 # 6468 # 8243 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.337 1_15 - 501 NAD_binding_8 PF13450.1 68 1.9e-05 16.2 0.0 1 1 2.5e-06 4.5e-05 15.0 0.0 1 41 11 53 11 70 0.86 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 698 Arch_ATPase PF01637.13 234 4.6e-12 37.5 5.0 1 4 0.022 0.78 0.8 0.0 36 70 13 47 12 87 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Arch_ATPase PF01637.13 234 4.6e-12 37.5 5.0 2 4 9.9e-06 0.00036 11.7 0.1 3 39 99 135 97 145 0.89 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Arch_ATPase PF01637.13 234 4.6e-12 37.5 5.0 3 4 2.4e-06 8.6e-05 13.7 0.0 101 208 171 277 146 296 0.76 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Arch_ATPase PF01637.13 234 4.6e-12 37.5 5.0 4 4 0.00079 0.028 5.5 0.2 27 44 453 470 442 620 0.53 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_15 - 501 OCD_Mu_crystall PF02423.10 314 0.00031 11.0 0.0 1 1 1.4e-05 0.0005 10.3 0.0 126 163 3 40 1 48 0.92 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 698 AAA_16 PF13191.1 185 2.1e-16 51.9 1.8 1 3 4.1e-11 1.5e-09 29.5 0.1 2 93 97 190 96 226 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_16 PF13191.1 185 2.1e-16 51.9 1.8 2 3 9.4e-07 3.4e-05 15.3 0.0 3 63 419 485 417 507 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_16 PF13191.1 185 2.1e-16 51.9 1.8 3 3 0.011 0.4 2.1 0.0 148 176 516 545 505 554 0.82 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_23 PF13476.1 202 1.4e-05 17.0 18.0 1 2 2.8e-06 0.0001 14.2 4.6 23 196 120 371 100 418 0.55 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_23 PF13476.1 202 1.4e-05 17.0 18.0 2 2 1.4e-05 0.0005 11.9 0.6 20 137 447 595 438 673 0.56 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_18 PF13238.1 129 6.8e-09 27.6 4.6 1 2 6.5e-06 0.00023 12.9 0.1 2 81 120 196 120 206 0.82 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_18 PF13238.1 129 6.8e-09 27.6 4.6 2 2 2.2e-06 8e-05 14.4 0.0 3 23 451 488 450 564 0.65 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 CbiA PF01656.18 195 4.2e-05 14.5 0.5 1 2 0.00039 0.014 6.2 0.0 7 29 124 145 120 261 0.79 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 CbiA PF01656.18 195 4.2e-05 14.5 0.5 2 2 0.00068 0.025 5.4 0.1 8 49 455 504 451 601 0.66 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_14 PF13173.1 128 5.9e-14 43.6 0.1 1 2 2.9e-08 1e-06 20.1 0.0 6 87 120 225 115 258 0.74 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_14 PF13173.1 128 5.9e-14 43.6 0.1 2 2 2.2e-08 7.8e-07 20.5 0.0 7 89 451 547 447 580 0.71 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 SRPRB PF09439.5 181 3.8e-06 17.7 2.8 1 3 0.0036 0.13 2.9 0.0 2 30 115 143 114 167 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 SRPRB PF09439.5 181 3.8e-06 17.7 2.8 2 3 0.00089 0.032 4.9 1.0 126 157 321 357 316 375 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 SRPRB PF09439.5 181 3.8e-06 17.7 2.8 3 3 0.00021 0.0077 6.9 0.0 5 30 448 473 445 516 0.80 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_27 - 346 HI0933_like PF03486.9 409 7.1e-05 12.8 0.1 1 1 3.1e-06 0.00011 12.2 0.1 2 67 170 235 169 243 0.80 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_4 - 45 GRDA PF04723.9 150 0.00011 13.4 0.9 1 1 3.1e-06 0.00011 13.4 0.9 112 144 13 44 3 44 0.90 # 2453 # 2587 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.304 1_6 - 698 AAA_29 PF13555.1 62 9.7e-06 16.6 0.1 1 2 7e-05 0.0025 8.9 0.0 21 48 114 141 104 149 0.80 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_29 PF13555.1 62 9.7e-06 16.6 0.1 2 2 0.0011 0.038 5.1 0.0 23 37 447 460 435 474 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA PF00004.24 132 2.3e-29 93.7 0.2 1 2 7.3e-20 2.6e-18 58.0 0.0 2 127 120 255 119 260 0.73 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA PF00004.24 132 2.3e-29 93.7 0.2 2 2 4.5e-12 1.6e-10 32.8 0.0 2 111 450 569 449 581 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 592 Strep_67kDa_ant PF06100.6 500 6.4e-282 926.6 0.1 1 1 2.1e-283 7.7e-282 926.3 0.1 1 500 21 520 21 520 1.00 # 6468 # 8243 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.337 1_6 - 698 Sigma54_activat PF00158.21 168 1.8e-15 48.2 0.5 1 2 1.8e-06 6.6e-05 13.9 0.1 2 105 98 199 97 204 0.73 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Sigma54_activat PF00158.21 168 1.8e-15 48.2 0.5 2 2 4.4e-12 1.6e-10 32.2 0.0 24 158 448 582 418 591 0.77 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_22 - 170 N6_Mtase PF02384.11 311 1.6e-48 156.8 0.1 1 1 5.2e-50 1.9e-48 156.5 0.1 179 310 1 131 1 132 0.97 # 20052 # 20561 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.327 1_6 - 698 DUF258 PF03193.11 161 5e-07 20.5 0.1 1 2 1.6e-05 0.00058 10.5 0.0 24 58 105 139 84 171 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 DUF258 PF03193.11 161 5e-07 20.5 0.1 2 2 0.0002 0.0073 7.0 0.0 39 57 450 468 439 503 0.87 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NTPase_1 PF03266.10 168 0.00018 12.7 1.1 1 2 0.00042 0.015 6.4 0.1 3 29 120 146 118 149 0.88 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NTPase_1 PF03266.10 168 0.00018 12.7 1.1 2 2 0.0064 0.23 2.6 0.0 5 20 452 467 448 475 0.83 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_33 PF13671.1 143 1.8e-05 16.1 0.0 1 2 0.0046 0.17 3.3 0.0 3 22 120 139 120 192 0.72 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_33 PF13671.1 143 1.8e-05 16.1 0.0 2 2 7e-05 0.0025 9.2 0.0 3 20 450 467 449 524 0.88 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_27 - 346 2-Hacid_dh_C PF02826.14 178 2.2e-05 15.1 0.0 1 1 1.2e-06 4.1e-05 14.2 0.0 29 82 161 215 143 232 0.82 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_27 - 346 MTS PF05175.9 170 0.00018 12.4 0.2 1 1 1.1e-05 0.00041 11.2 0.0 31 101 167 238 146 241 0.86 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_6 - 698 ABC_tran PF00005.22 137 1.9e-05 16.5 2.8 1 2 0.0035 0.12 4.1 1.9 15 42 120 145 111 391 0.83 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 ABC_tran PF00005.22 137 1.9e-05 16.5 2.8 2 2 8.3e-05 0.003 9.3 0.0 16 80 451 530 447 598 0.67 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_15 - 501 K_oxygenase PF13434.1 341 6e-05 13.5 0.0 1 2 0.065 2.3 -1.6 0.0 189 202 5 18 2 43 0.62 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_15 - 501 K_oxygenase PF13434.1 341 6e-05 13.5 0.0 2 2 6.7e-06 0.00024 11.5 0.0 285 338 191 244 182 246 0.89 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_27 - 346 UDPG_MGDP_dh_N PF03721.9 185 0.00011 13.1 0.5 1 2 0.051 1.8 -0.7 0.0 30 51 77 98 66 108 0.61 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_27 - 346 UDPG_MGDP_dh_N PF03721.9 185 0.00011 13.1 0.5 2 2 2e-05 0.00073 10.4 0.0 2 41 170 210 169 224 0.88 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_6 - 698 RuvB_N PF05496.7 234 1.3e-05 15.8 3.8 1 3 0.0084 0.3 1.5 1.0 92 112 176 198 103 202 0.61 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 RuvB_N PF05496.7 234 1.3e-05 15.8 3.8 2 3 2.8e-05 0.001 9.6 0.0 23 74 415 470 395 488 0.76 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 RuvB_N PF05496.7 234 1.3e-05 15.8 3.8 3 3 0.011 0.39 1.1 0.0 100 130 518 548 475 559 0.83 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_19 PF13245.1 76 2.4e-05 15.5 0.0 1 2 0.00011 0.004 8.5 0.1 9 36 117 141 109 158 0.77 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_19 PF13245.1 76 2.4e-05 15.5 0.0 2 2 0.0026 0.094 4.0 0.0 16 37 452 473 441 493 0.82 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_10 PF12846.2 304 6.5e-07 20.4 0.6 1 3 0.028 1 0.1 0.0 5 34 120 149 116 170 0.75 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_10 PF12846.2 304 6.5e-07 20.4 0.6 2 3 0.00042 0.015 6.1 0.0 212 237 176 205 147 210 0.67 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_10 PF12846.2 304 6.5e-07 20.4 0.6 3 3 3.6e-05 0.0013 9.6 0.1 3 116 448 622 447 678 0.60 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_15 - 501 Mqo PF06039.10 489 3.9e-234 768.6 0.0 1 1 1.3e-235 4.6e-234 768.4 0.0 3 489 5 492 3 492 0.99 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_15 - 501 DAO PF01266.19 358 9.3e-11 32.6 0.0 1 1 2.8e-12 1e-10 32.5 0.0 2 213 9 257 8 411 0.87 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 698 ResIII PF04851.10 184 8.8e-08 23.6 5.0 1 4 0.0033 0.12 3.6 0.0 12 44 104 135 77 147 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 ResIII PF04851.10 184 8.8e-08 23.6 5.0 2 4 0.00088 0.032 5.5 0.1 109 160 149 201 136 220 0.77 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 ResIII PF04851.10 184 8.8e-08 23.6 5.0 3 4 0.012 0.43 1.8 0.7 58 123 328 392 316 417 0.69 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 ResIII PF04851.10 184 8.8e-08 23.6 5.0 4 4 4.4e-05 0.0016 9.7 0.0 8 46 421 467 419 478 0.76 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_11 - 383 Methyltransf_31 PF13847.1 152 0.00011 13.3 0.1 1 1 5.8e-06 0.00021 12.4 0.1 2 79 181 257 180 295 0.74 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 698 DUF815 PF05673.8 250 6.7e-08 23.2 0.3 1 2 8e-06 0.00029 11.2 0.0 40 81 103 144 86 196 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 DUF815 PF05673.8 250 6.7e-08 23.2 0.3 2 2 0.00036 0.013 5.8 0.1 33 102 425 495 396 656 0.76 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_27 - 346 Pyr_redox PF00070.22 80 3.4e-06 18.9 0.1 1 2 8.7e-05 0.0016 10.4 0.0 10 62 68 114 67 127 0.84 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_27 - 346 Pyr_redox PF00070.22 80 3.4e-06 18.9 0.1 2 2 0.0048 0.086 4.8 0.1 2 34 171 204 170 214 0.83 # 23285 # 24322 # -1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.360 1_15 - 501 Pyr_redox PF00070.22 80 0.00024 13.0 0.0 1 2 0.00062 0.011 7.7 0.0 2 35 9 44 8 54 0.85 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_15 - 501 Pyr_redox PF00070.22 80 0.00024 13.0 0.0 2 2 0.032 0.57 2.2 0.1 42 78 186 224 169 229 0.79 # 13347 # 14849 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.338 1_6 - 698 TrwB_AAD_bind PF10412.4 386 2.7e-05 14.3 0.0 1 2 5.9e-05 0.0021 8.1 0.0 12 52 113 153 106 199 0.84 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 TrwB_AAD_bind PF10412.4 386 2.7e-05 14.3 0.0 2 2 0.0015 0.053 3.5 0.0 17 44 448 475 441 487 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 Kinesin-relat_1 PF12711.2 86 0.00038 12.4 2.2 1 1 4.2e-05 0.0015 10.4 2.2 2 42 333 371 332 376 0.94 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_17 - 143 TIGR00329 TIGR00329 305 0.00012 12.5 0.2 1 1 3.9e-06 0.00014 12.3 0.2 156 225 14 87 3 133 0.80 # 17720 # 18148 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.268 1_6 - 698 RNA_helicase PF00910.17 107 5.8e-08 24.4 1.9 1 2 0.00011 0.0041 8.8 0.0 3 26 121 144 120 197 0.82 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 RNA_helicase PF00910.17 107 5.8e-08 24.4 1.9 2 2 1.6e-05 0.00059 11.5 0.5 2 27 450 484 449 569 0.62 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 UPF0079 PF02367.12 123 2.9e-05 15.2 0.1 1 2 0.00012 0.0045 8.1 0.0 19 40 120 141 105 149 0.83 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 UPF0079 PF02367.12 123 2.9e-05 15.2 0.1 2 2 0.0019 0.069 4.3 0.0 19 43 450 475 445 479 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_11 - 383 AlaDh_PNT_C PF01262.16 168 0.00017 12.6 0.1 1 1 1.1e-05 0.0004 11.4 0.1 21 55 184 218 174 266 0.81 # 10212 # 11360 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.353 1_6 - 698 AAA_24 PF13479.1 213 1.2e-05 16.5 0.1 1 2 0.0076 0.27 2.2 0.0 7 24 120 137 114 141 0.78 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_24 PF13479.1 213 1.2e-05 16.5 0.1 2 2 1.2e-05 0.00044 11.3 0.1 6 89 449 540 447 555 0.75 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NACHT PF05729.7 166 4.4e-08 24.4 0.0 1 2 9.2e-07 3.3e-05 15.0 0.0 4 31 120 147 118 163 0.93 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 NACHT PF05729.7 166 4.4e-08 24.4 0.0 2 2 0.00045 0.016 6.3 0.0 4 24 450 470 448 485 0.86 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_25 PF13481.1 194 3e-08 24.7 0.8 1 2 0.00016 0.0059 7.4 0.1 37 61 120 144 94 229 0.87 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_25 PF13481.1 194 3e-08 24.7 0.8 2 2 3.8e-06 0.00014 12.8 0.1 13 94 426 519 421 640 0.54 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_28 PF13521.1 163 0.00023 12.6 0.1 1 2 0.0067 0.24 2.8 0.0 4 22 121 139 119 194 0.80 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_28 PF13521.1 163 0.00023 12.6 0.1 2 2 0.00062 0.022 6.1 0.0 2 20 449 467 448 496 0.85 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_5 PF07728.9 139 7.7e-18 56.0 0.3 1 2 1.4e-06 4.9e-05 14.6 0.1 3 75 120 197 118 202 0.59 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_6 - 698 AAA_5 PF07728.9 139 7.7e-18 56.0 0.3 2 2 5.9e-14 2.1e-12 38.4 0.0 2 125 449 571 448 590 0.81 # 3787 # 5880 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f349b3a0-3160-4a98-9cd4-b832b24f7d74 # Target file: checkm_output/bins/pGCA_001922405.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001922405.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f349b3a0-3160-4a98-9cd4-b832b24f7d74 checkm_output/bins/pGCA_001922405.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:20 2020 # [ok]