# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_83 - 1149 Methyltransf_12 PF08242.7 99 1.8e-05 18.6 0.0 1 1 5.9e-07 8.4e-05 16.5 0.0 1 99 1005 1090 1005 1090 0.79 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_83 - 1149 RrnaAD PF00398.15 262 0.0018 10.7 0.0 1 1 2.6e-05 0.0037 9.7 0.0 22 90 992 1055 985 1070 0.88 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_87 - 610 Seryl_tRNA_N PF02403.17 108 0.016 8.7 5.7 1 1 6.5e-05 0.0092 9.4 3.2 61 104 358 401 342 402 0.80 # 58129 # 59958 # -1 # ID=1_87;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_48 - 217 MipZ PF09140.6 261 8.9e-16 51.1 0.4 1 2 1.1e-15 1.5e-13 43.8 0.4 2 146 4 128 3 187 0.73 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 MipZ PF09140.6 261 8.9e-16 51.1 0.4 2 2 0.043 6.1 -0.8 0.0 214 234 180 200 169 209 0.70 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_40 - 191 SSB PF00436.20 104 1.4e-42 137.2 0.3 1 1 1.4e-44 1.9e-42 136.8 0.3 1 99 5 104 5 112 0.96 # 24601 # 25173 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.674 1_83 - 1149 Methyltransf_18 PF12847.2 112 6.8e-07 23.3 0.3 1 1 3.2e-08 4.6e-06 20.6 0.0 2 109 1001 1092 1000 1094 0.85 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_48 - 217 ATP_bind_1 PF03029.12 238 0.00023 14.1 0.0 1 1 2.7e-06 0.00038 13.4 0.0 6 59 13 69 6 106 0.83 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 SRP54 PF00448.17 196 2.1e-09 30.5 0.9 1 1 3e-11 4.3e-09 29.5 0.9 4 120 4 115 2 133 0.71 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 614 Helicase_C PF00271.26 78 4.4e-06 19.9 0.0 1 1 6.8e-08 9.6e-06 18.9 0.0 11 78 441 510 435 510 0.90 # 2444 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_48 - 217 ArsA_ATPase PF02374.10 305 6.3e-09 28.6 0.1 1 1 9.4e-11 1.3e-08 27.5 0.1 3 50 4 52 2 67 0.89 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 VirC1 PF07015.6 231 1.6e-06 20.7 0.1 1 1 1.8e-08 2.6e-06 20.1 0.1 2 123 3 120 2 208 0.74 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 Fer4_NifH PF00142.13 273 0.00015 14.4 0.2 1 3 9.7e-06 0.0014 11.2 0.0 7 42 9 45 3 59 0.85 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 Fer4_NifH PF00142.13 273 0.00015 14.4 0.2 2 3 0.027 3.8 -0.1 0.0 197 249 77 131 45 152 0.66 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 Fer4_NifH PF00142.13 273 0.00015 14.4 0.2 3 3 0.051 7.2 -1.0 0.0 48 86 139 176 136 184 0.84 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 CbiA PF01656.18 195 1.1e-15 50.9 0.1 1 1 1.1e-17 1.6e-15 50.4 0.1 1 142 5 128 5 167 0.83 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_83 - 1149 DREV PF05219.7 265 0.0017 10.6 0.0 1 1 1.9e-05 0.0027 10.0 0.0 93 141 999 1047 989 1064 0.86 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_48 - 217 AAA_31 PF13614.1 157 9.5e-08 25.5 0.1 1 2 2.5e-07 3.5e-05 17.2 0.0 2 46 4 48 3 61 0.89 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_48 - 217 AAA_31 PF13614.1 157 9.5e-08 25.5 0.1 2 2 0.00056 0.08 6.3 0.0 105 147 68 109 56 117 0.84 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_83 - 1149 Methyltransf_26 PF13659.1 117 1.5e-13 44.3 2.3 1 2 0.085 12 -0.6 0.1 48 75 182 257 18 296 0.52 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_83 - 1149 Methyltransf_26 PF13659.1 117 1.5e-13 44.3 2.3 2 2 5.4e-15 7.6e-13 42.0 0.0 2 115 1002 1094 1001 1096 0.86 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_83 - 1149 MTS PF05175.9 170 2.1e-08 27.1 0.0 1 1 3.2e-10 4.5e-08 26.0 0.0 31 141 1000 1095 989 1104 0.87 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_6 - 614 Helicase_C_4 PF13871.1 278 1.7e-05 17.8 0.0 1 1 2.8e-07 3.9e-05 16.5 0.0 52 118 454 514 440 524 0.82 # 2444 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_48 - 217 AAA_10 PF12846.2 304 0.00031 13.6 0.0 1 1 3.5e-06 0.0005 12.9 0.0 11 48 13 55 3 179 0.90 # 29043 # 29693 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_6 - 614 DEAD PF00270.24 169 1.7e-06 21.0 0.0 1 1 2.9e-08 4.1e-06 19.8 0.0 6 165 118 272 113 274 0.77 # 2444 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.672 1_83 - 1149 Methyltransf_23 PF13489.1 161 1.1e-09 31.7 0.1 1 1 3.9e-11 5.6e-09 29.3 0.0 14 113 993 1092 988 1120 0.82 # 49686 # 53132 # -1 # ID=1_83;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.664 1_6 - 614 SNF2_N PF00176.18 299 1.3e-26 86.4 0.0 1 1 1.5e-28 2.1e-26 85.8 0.0 7 293 63 396 59 401 0.77 # 2444 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.672 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dc4ee495-6e9c-4353-a315-3177375abe42 # Target file: checkm_output/bins/pGCA_001913135.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001913135.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dc4ee495-6e9c-4353-a315-3177375abe42 checkm_output/bins/pGCA_001913135.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:16 2020 # [ok]