# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_8 - 281 ThiI PF02568.9 197 0.00097 12.7 0.0 1 2 1.6e-05 0.0038 10.8 0.0 5 115 20 123 15 129 0.64 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 2_8 - 281 ThiI PF02568.9 197 0.00097 12.7 0.0 2 2 0.093 22 -1.5 0.0 149 193 155 201 141 204 0.73 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 2_8 - 281 ATP_bind_3 PF01171.15 182 6.3e-07 23.2 0.0 1 1 4.7e-09 1.1e-06 22.4 0.0 2 108 21 128 20 132 0.69 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 8_1 - 270 Methyltransf_32 PF13679.1 141 0.0012 12.6 0.1 1 2 0.00041 0.097 6.5 0.0 32 68 11 47 4 64 0.85 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 8_1 - 270 Methyltransf_32 PF13679.1 141 0.0012 12.6 0.1 2 2 0.004 0.94 3.3 0.0 26 45 172 191 158 216 0.78 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_19 - 541 UPF0020 PF01170.13 180 7.5e-06 19.7 0.0 1 1 6.7e-08 1.6e-05 18.7 0.0 27 118 230 319 218 328 0.85 # 18427 # 20049 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 2_17 - 91 IstB_IS21 PF01695.12 178 1.4e-05 18.7 0.0 1 1 2.2e-07 2.7e-05 17.8 0.0 1 32 54 85 54 87 0.94 # 16960 # 17232 # 1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.388 2_26 - 844 IstB_IS21 PF01695.12 178 0.0008 13.0 0.0 1 1 2.1e-05 0.0024 11.4 0.0 49 76 97 124 77 157 0.74 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 8_1 - 270 MipZ PF09140.6 261 2.6e-13 43.7 0.0 1 1 4.7e-13 2.2e-11 37.4 0.0 3 131 4 154 2 172 0.65 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 6_11 - 270 MipZ PF09140.6 261 5.6e-11 36.1 0.0 1 2 8.3e-09 3.9e-07 23.5 0.0 2 56 4 58 3 79 0.91 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 6_11 - 270 MipZ PF09140.6 261 5.6e-11 36.1 0.0 2 2 6.9e-05 0.0033 10.6 0.0 65 122 94 150 79 158 0.74 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_2 - 287 MipZ PF09140.6 261 1.6e-10 34.6 0.2 1 2 4.4e-09 2.1e-07 24.4 0.2 2 57 18 72 17 102 0.77 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 1_2 - 287 MipZ PF09140.6 261 1.6e-10 34.6 0.2 2 2 0.00038 0.018 8.2 0.0 76 122 119 165 95 178 0.80 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 3_9 - 267 MipZ PF09140.6 261 3.3e-09 30.3 0.1 1 2 7.7e-09 3.6e-07 23.6 0.0 2 52 2 52 1 73 0.78 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 3_9 - 267 MipZ PF09140.6 261 3.3e-09 30.3 0.1 2 2 0.0046 0.22 4.7 0.0 68 108 94 135 74 157 0.70 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 9_3 - 301 MipZ PF09140.6 261 1.6e-08 28.0 0.4 1 2 9.9e-08 4.7e-06 19.9 0.1 2 43 4 46 3 58 0.87 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 9_3 - 301 MipZ PF09140.6 261 1.6e-08 28.0 0.4 2 2 0.0016 0.074 6.2 0.0 84 122 109 147 97 153 0.74 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 8_1 - 270 YhjQ PF06564.7 244 1.7e-12 41.3 0.0 1 1 6e-14 2.8e-12 40.6 0.0 1 184 1 190 1 243 0.76 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 3_9 - 267 YhjQ PF06564.7 244 1.9e-11 37.9 0.0 1 1 6e-13 2.8e-11 37.3 0.0 10 150 9 158 2 181 0.78 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 6_11 - 270 YhjQ PF06564.7 244 5.9e-11 36.2 0.0 1 1 1.7e-12 8.2e-11 35.8 0.0 4 151 5 160 1 166 0.82 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_2 - 287 YhjQ PF06564.7 244 4.3e-08 26.9 0.0 1 1 1.7e-09 8.2e-08 26.0 0.0 10 147 25 171 17 179 0.75 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 9_3 - 301 YhjQ PF06564.7 244 6.4e-08 26.3 0.0 1 1 1.8e-09 8.3e-08 25.9 0.0 2 180 3 185 1 209 0.75 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 4_5 - 465 3HCDH_N PF02737.13 180 2.1e-08 28.1 0.2 1 1 2.9e-10 3.5e-08 27.4 0.2 3 73 161 231 159 239 0.89 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 3HCDH_N PF02737.13 180 0.0021 11.8 0.0 1 1 3.7e-05 0.0043 10.8 0.0 2 44 16 58 15 97 0.85 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_5 - 465 GIDA PF01134.17 392 1.3e-07 24.9 1.6 1 3 0.0021 0.25 4.2 0.1 2 21 8 27 7 45 0.84 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 GIDA PF01134.17 392 1.3e-07 24.9 1.6 2 3 0.00028 0.033 7.1 0.0 116 150 82 116 48 149 0.86 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 GIDA PF01134.17 392 1.3e-07 24.9 1.6 3 3 1.5e-05 0.0017 11.3 0.0 3 54 161 210 159 240 0.84 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 GIDA PF01134.17 392 0.00014 14.9 1.0 1 1 2.9e-06 0.00034 13.6 1.0 1 28 15 42 15 63 0.88 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_5 - 465 Pyr_redox_2 PF07992.9 201 1.4e-28 94.2 0.0 1 1 3.5e-30 2.7e-28 93.3 0.0 2 198 8 297 7 300 0.87 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 Pyr_redox_2 PF07992.9 201 4.9e-07 23.9 0.0 1 1 1.2e-08 9.3e-07 23.0 0.0 1 75 15 95 15 214 0.83 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_27 - 373 Pyr_redox_2 PF07992.9 201 9.6e-05 16.4 0.3 1 1 2.9e-06 0.00023 15.2 0.3 1 37 5 41 5 91 0.84 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 6_2 - 144 Usp PF00582.21 140 8.1e-26 85.0 1.2 1 1 4e-28 9.3e-26 84.8 1.2 2 140 5 143 4 143 0.97 # 792 # 1223 # -1 # ID=6_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.398 3_9 - 267 DUF87 PF01935.12 229 0.00047 14.1 0.1 1 1 4.9e-06 0.0012 12.8 0.1 33 60 11 37 9 67 0.92 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 8_7 - 308 AAA_22 PF13401.1 131 0.00052 14.3 0.2 1 1 9.5e-06 0.0022 12.2 0.0 4 91 33 113 28 134 0.83 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 8_1 - 270 ATP_bind_1 PF03029.12 238 1.4e-07 25.4 0.0 1 1 1.1e-09 2.6e-07 24.5 0.0 6 99 12 130 10 144 0.80 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 8_1 - 270 SRP54 PF00448.17 196 1.5e-05 18.6 0.6 1 1 3.7e-07 4.4e-05 17.1 0.3 10 40 11 41 1 46 0.84 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 3_9 - 267 SRP54 PF00448.17 196 0.00021 14.9 0.2 1 2 6.8e-05 0.008 9.7 0.0 11 38 11 38 9 43 0.94 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 3_9 - 267 SRP54 PF00448.17 196 0.00021 14.9 0.2 2 2 0.0072 0.85 3.1 0.0 65 149 108 195 86 214 0.76 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 4_5 - 465 NAD_binding_7 PF13241.1 103 0.00026 15.4 0.0 1 2 0.011 2.7 2.5 0.0 5 33 3 31 1 95 0.79 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 NAD_binding_7 PF13241.1 103 0.00026 15.4 0.0 2 2 4.9e-05 0.012 10.1 0.1 7 45 157 211 154 272 0.63 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 8_1 - 270 AAA_17 PF13207.1 121 0.00094 14.1 0.1 1 1 2e-05 0.0046 11.9 0.0 9 32 12 40 11 106 0.78 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_8 - 281 Arginosuc_synth PF00764.14 388 0.00078 12.6 0.1 1 2 1.1e-05 0.0026 10.9 0.0 2 51 23 74 22 98 0.78 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 2_8 - 281 Arginosuc_synth PF00764.14 388 0.00078 12.6 0.1 2 2 0.05 12 -1.1 0.0 135 160 143 168 132 198 0.82 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 3_9 - 267 LpxK PF02606.9 326 0.0017 11.4 0.0 1 1 1.1e-05 0.0025 10.8 0.0 46 71 10 35 2 54 0.92 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 2_8 - 281 NAD_synthase PF02540.12 242 3.8e-11 36.4 0.1 1 1 2.8e-13 6.6e-11 35.6 0.1 16 107 16 107 3 175 0.85 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 3_9 - 267 ArsA_ATPase PF02374.10 305 2e-12 40.8 0.4 1 1 1.1e-13 5.1e-12 39.5 0.1 9 137 9 136 3 140 0.82 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 8_1 - 270 ArsA_ATPase PF02374.10 305 2.1e-12 40.7 0.0 1 1 8.2e-14 3.9e-12 39.9 0.0 5 137 6 132 1 137 0.72 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 6_11 - 270 ArsA_ATPase PF02374.10 305 6.7e-12 39.1 0.6 1 1 2.5e-12 1.2e-10 35.0 0.6 2 137 3 137 2 141 0.67 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_2 - 287 ArsA_ATPase PF02374.10 305 1.3e-08 28.4 0.2 1 1 6.7e-10 3.1e-08 27.1 0.2 8 136 24 151 17 154 0.75 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 9_3 - 301 ArsA_ATPase PF02374.10 305 0.00017 14.8 4.1 1 2 1.8e-05 0.00083 12.5 1.2 8 136 10 133 2 137 0.62 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 9_3 - 301 ArsA_ATPase PF02374.10 305 0.00017 14.8 4.1 2 2 0.044 2.1 1.4 0.1 235 279 136 182 134 197 0.78 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 4_5 - 465 Shikimate_DH PF01488.15 135 0.00064 14.0 0.3 1 1 7.1e-06 0.0017 12.6 0.3 12 87 157 230 150 257 0.71 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_27 - 373 Cytidylate_kin2 PF13189.1 179 0.00097 13.2 0.1 1 1 1.1e-05 0.0027 11.8 0.0 89 122 332 366 263 369 0.78 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 8_7 - 308 Zeta_toxin PF06414.7 201 6.1e-54 176.3 0.0 1 1 4.4e-56 1e-53 175.5 0.0 3 198 22 213 20 216 0.95 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 1_27 - 373 NAD_binding_8 PF13450.1 68 1.2e-21 70.7 0.4 1 1 6.1e-23 2.9e-21 69.5 0.4 1 68 8 74 8 74 0.96 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 10_4 - 590 NAD_binding_8 PF13450.1 68 1.4e-09 32.0 0.1 1 1 6e-11 2.9e-09 31.0 0.1 1 66 27 95 27 97 0.77 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 591 NAD_binding_8 PF13450.1 68 3.1e-09 30.9 0.1 1 1 1.3e-10 6.1e-09 30.0 0.1 1 66 27 95 27 97 0.81 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 4_11 - 594 NAD_binding_8 PF13450.1 68 8.5e-05 16.7 1.1 1 1 1.2e-05 0.00057 14.0 0.0 1 30 18 47 18 89 0.91 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_5 - 465 NAD_binding_8 PF13450.1 68 0.00052 14.2 0.0 1 1 0.00012 0.0057 10.8 0.0 1 31 162 192 162 213 0.94 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 F420_oxidored PF03807.12 96 0.00097 13.7 0.1 1 1 9.3e-06 0.0022 12.6 0.1 2 52 160 206 159 269 0.81 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_41 - 591 FAD_binding_3 PF01494.14 356 0.0007 12.8 0.3 1 2 3.3e-05 0.0039 10.3 0.2 5 24 26 45 22 48 0.90 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_41 - 591 FAD_binding_3 PF01494.14 356 0.0007 12.8 0.3 2 2 0.048 5.6 -0.1 0.0 114 159 229 277 176 279 0.77 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 10_4 - 590 FAD_binding_3 PF01494.14 356 0.0016 11.6 0.9 1 1 1.9e-05 0.0022 11.2 0.2 5 24 26 45 22 47 0.90 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 8_1 - 270 VirC1 PF07015.6 231 6.4e-06 19.5 0.0 1 1 8.1e-08 9.5e-06 18.9 0.0 1 46 1 46 1 80 0.90 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 6_11 - 270 VirC1 PF07015.6 231 0.00095 12.4 0.4 1 1 2.3e-05 0.0027 10.9 0.0 2 39 3 40 2 48 0.84 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 2_8 - 281 TIGR02432 TIGR02432 189 3.8e-06 20.8 0.0 1 1 3.2e-08 7.4e-06 19.8 0.0 2 106 21 123 20 131 0.77 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 3_9 - 267 Fer4_NifH PF00142.13 273 1.1e-09 31.9 0.4 1 1 9.9e-11 4.7e-09 29.9 0.1 7 52 8 53 3 61 0.92 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 1_2 - 287 Fer4_NifH PF00142.13 273 2e-07 24.5 2.0 1 1 5.9e-09 2.8e-07 24.1 0.3 8 57 25 76 18 97 0.83 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 9_3 - 301 Fer4_NifH PF00142.13 273 2.7e-06 20.8 0.1 1 1 1.1e-07 5.3e-06 19.9 0.1 7 54 10 58 3 84 0.77 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 8_1 - 270 Fer4_NifH PF00142.13 273 1.1e-05 18.8 0.1 1 2 0.00011 0.0052 10.1 0.0 8 42 10 44 3 81 0.88 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 8_1 - 270 Fer4_NifH PF00142.13 273 1.1e-05 18.8 0.1 2 2 0.0013 0.061 6.6 0.0 187 236 196 247 186 265 0.76 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 6_11 - 270 Fer4_NifH PF00142.13 273 3.3e-05 17.3 0.0 1 1 1.2e-06 5.6e-05 16.5 0.0 8 52 11 55 2 75 0.90 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 2_8 - 281 QueC PF06508.8 210 3.6e-06 20.5 0.1 1 1 2.8e-08 6.7e-06 19.6 0.1 2 65 21 85 20 133 0.89 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 8_7 - 308 AAA_16 PF13191.1 185 2.8e-05 18.3 0.0 1 1 3.4e-07 8e-05 16.8 0.0 7 84 18 107 14 293 0.85 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 8_1 - 270 AAA_18 PF13238.1 129 0.00043 14.7 0.4 1 1 2.8e-05 0.0033 11.9 0.1 8 86 12 92 11 156 0.63 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_26 - 844 AAA_18 PF13238.1 129 0.0021 12.5 0.1 1 1 0.00026 0.031 8.7 0.0 1 23 98 130 98 173 0.69 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 6_11 - 270 CbiA PF01656.18 195 2.6e-30 99.4 0.0 1 1 7e-32 3.3e-30 99.0 0.0 1 184 5 221 5 232 0.74 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 1_2 - 287 CbiA PF01656.18 195 4.2e-29 95.5 0.5 1 1 1.1e-30 5.2e-29 95.1 0.5 1 190 19 240 19 245 0.81 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 3_9 - 267 CbiA PF01656.18 195 1.7e-27 90.2 0.2 1 1 4.7e-29 2.2e-27 89.8 0.2 1 193 3 228 3 230 0.82 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 8_1 - 270 CbiA PF01656.18 195 2.9e-26 86.2 0.0 1 1 9.5e-28 4.5e-26 85.5 0.0 1 158 4 196 4 233 0.70 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 9_3 - 301 CbiA PF01656.18 195 3.5e-24 79.4 0.2 1 1 9.8e-26 4.6e-24 79.0 0.2 1 193 5 228 5 230 0.72 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 8_1 - 270 AAA_14 PF13173.1 128 9e-05 16.5 0.6 1 1 1.4e-06 0.00034 14.6 0.4 12 44 12 45 7 128 0.79 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 4_5 - 465 HI0933_like PF03486.9 409 1.5e-07 24.3 0.7 1 3 0.001 0.082 5.4 0.0 2 28 7 35 6 43 0.77 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 HI0933_like PF03486.9 409 1.5e-07 24.3 0.7 2 3 7.1e-05 0.0056 9.2 0.0 116 164 68 116 63 142 0.92 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 HI0933_like PF03486.9 409 1.5e-07 24.3 0.7 3 3 0.001 0.08 5.4 0.0 2 37 159 194 158 198 0.91 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 HI0933_like PF03486.9 409 2.1e-06 20.5 0.1 1 2 1.5e-07 1.2e-05 18.0 0.1 1 33 14 46 14 50 0.94 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_11 - 594 HI0933_like PF03486.9 409 2.1e-06 20.5 0.1 2 2 0.049 3.8 -0.1 0.0 356 407 411 465 317 467 0.72 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 10_4 - 590 HI0933_like PF03486.9 409 0.0019 10.8 0.7 1 3 0.0089 0.7 2.3 0.3 4 22 26 44 23 62 0.71 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 HI0933_like PF03486.9 409 0.0019 10.8 0.7 2 3 0.0013 0.099 5.1 0.0 102 145 220 263 201 292 0.79 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 HI0933_like PF03486.9 409 0.0019 10.8 0.7 3 3 0.078 6.1 -0.8 0.0 343 363 363 383 355 386 0.89 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 4_11 - 594 FAD_binding_2 PF00890.19 417 2.8e-33 109.4 0.9 1 1 8e-35 3.8e-33 109.0 0.9 1 401 15 440 15 453 0.81 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 10_4 - 590 FAD_binding_2 PF00890.19 417 3.7e-07 23.4 0.2 1 2 7.6e-05 0.0036 10.2 0.4 4 22 27 45 25 57 0.90 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 FAD_binding_2 PF00890.19 417 3.7e-07 23.4 0.2 2 2 5.2e-05 0.0025 10.8 0.0 126 182 212 272 176 316 0.75 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 591 FAD_binding_2 PF00890.19 417 4.8e-07 23.0 0.2 1 2 1.3e-05 0.00059 12.8 0.2 4 35 27 62 25 72 0.72 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_41 - 591 FAD_binding_2 PF00890.19 417 4.8e-07 23.0 0.2 2 2 0.00039 0.018 7.9 0.0 136 202 221 298 205 319 0.64 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_27 - 373 FAD_binding_2 PF00890.19 417 2.2e-05 17.5 0.1 1 1 1.1e-06 5.3e-05 16.3 0.1 1 37 5 41 5 49 0.92 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 4_5 - 465 FAD_binding_2 PF00890.19 417 7.5e-05 15.8 0.2 1 2 0.012 0.55 3.0 0.2 2 21 8 27 7 46 0.84 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 FAD_binding_2 PF00890.19 417 7.5e-05 15.8 0.2 2 2 0.00012 0.0055 9.6 0.0 135 204 55 119 42 136 0.87 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 Thi4 PF01946.12 230 1.9e-06 21.2 0.0 1 1 1.3e-08 3.1e-06 20.5 0.0 8 67 4 65 1 95 0.75 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_41 - 591 Strep_67kDa_ant PF06100.6 500 2.3e-257 848.3 0.1 1 1 2.2e-259 2.6e-257 848.1 0.1 1 500 21 521 21 521 0.99 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 10_4 - 590 Strep_67kDa_ant PF06100.6 500 4.7e-253 834.0 0.0 1 1 4.7e-255 5.6e-253 833.8 0.0 2 500 22 519 21 519 1.00 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 2_26 - 844 Sigma54_activat PF00158.21 168 6.3e-07 23.1 0.0 1 1 1.6e-08 3.8e-06 20.6 0.0 3 121 73 192 71 196 0.70 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 4_5 - 465 Pyr_redox_3 PF13738.1 203 3.9e-09 31.0 0.3 1 2 0.041 2.4 2.3 0.0 165 185 3 23 1 41 0.83 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 Pyr_redox_3 PF13738.1 203 3.9e-09 31.0 0.3 2 2 2.5e-09 1.5e-07 25.8 0.0 96 200 75 190 58 193 0.72 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 10_4 - 590 Pyr_redox_3 PF13738.1 203 5.3e-05 17.5 2.5 1 2 1.6e-05 0.00094 13.4 0.9 2 37 27 65 26 80 0.87 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 Pyr_redox_3 PF13738.1 203 5.3e-05 17.5 2.5 2 2 0.028 1.7 2.8 0.0 60 112 208 260 169 292 0.66 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 591 Pyr_redox_3 PF13738.1 203 0.00012 16.3 1.3 1 1 5.7e-05 0.0034 11.6 0.1 2 36 27 64 26 97 0.79 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_27 - 373 Pyr_redox_3 PF13738.1 203 0.00035 14.8 0.5 1 1 1.1e-05 0.00065 13.9 0.5 1 48 7 54 7 126 0.84 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 2_19 - 541 N6_Mtase PF02384.11 311 1.1e-117 386.6 0.0 1 1 7.1e-120 1.7e-117 386.0 0.0 2 308 181 489 180 492 0.96 # 18427 # 20049 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 1_33 - 181 GCD14 PF08704.5 247 0.028 8.0 5.8 1 1 0.00011 0.026 8.1 4.7 162 227 107 170 91 179 0.63 # 26856 # 27398 # -1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.372 2_8 - 281 Asn_synthase PF00733.16 255 3.3e-06 20.9 0.0 1 1 2e-08 4.7e-06 20.4 0.0 11 77 12 81 5 124 0.82 # 7592 # 8434 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.355 4_5 - 465 NAD_binding_2 PF03446.10 163 3.1e-06 21.2 0.4 1 1 2.2e-08 5.3e-06 20.5 0.4 2 76 158 236 157 279 0.72 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 8_1 - 270 AAA_31 PF13614.1 157 1.6e-14 48.3 0.0 1 1 2.9e-15 1.4e-13 45.2 0.0 2 151 3 154 2 159 0.73 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 6_11 - 270 AAA_31 PF13614.1 157 1.9e-13 44.7 0.8 1 1 2.9e-14 1.4e-12 41.9 0.8 2 149 4 157 3 162 0.75 # 6910 # 7719 # -1 # ID=6_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.353 9_3 - 301 AAA_31 PF13614.1 157 3.9e-10 34.0 0.8 1 1 1e-10 4.9e-09 30.4 0.8 1 150 3 155 3 159 0.81 # 787 # 1689 # -1 # ID=9_3;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.358 3_9 - 267 AAA_31 PF13614.1 157 1.9e-08 28.5 0.2 1 1 1.1e-09 5e-08 27.1 0.2 9 149 9 156 2 162 0.75 # 9024 # 9824 # -1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.360 1_2 - 287 AAA_31 PF13614.1 157 3e-07 24.6 0.3 1 1 4.5e-08 2.1e-06 21.9 0.3 9 135 25 159 18 179 0.64 # 469 # 1329 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.384 8_7 - 308 AAA_33 PF13671.1 143 0.00016 15.7 0.1 1 2 3e-06 0.00071 13.6 0.0 3 108 37 147 36 184 0.73 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 8_7 - 308 AAA_33 PF13671.1 143 0.00016 15.7 0.1 2 2 0.075 18 -0.7 0.0 29 52 241 264 213 289 0.62 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 8_1 - 270 KTI12 PF08433.5 270 0.0011 12.3 0.0 1 1 9.3e-06 0.0022 11.3 0.0 12 42 13 48 10 85 0.81 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_19 - 541 Methyltransf_26 PF13659.1 117 5.1e-12 40.0 0.0 1 1 7.1e-14 1.7e-11 38.3 0.0 3 116 234 368 232 369 0.78 # 18427 # 20049 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 4_5 - 465 2-Hacid_dh_C PF02826.14 178 0.00014 15.2 0.0 1 1 2.3e-06 0.00054 13.3 0.0 35 79 156 199 131 220 0.79 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 1_25 - 88 AAA_30 PF13604.1 196 0.0005 13.8 0.0 1 1 4.5e-06 0.00054 13.7 0.0 47 88 11 52 4 83 0.83 # 21635 # 21898 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 3_2 - 84 AAA_30 PF13604.1 196 0.00069 13.3 0.0 1 1 6.1e-06 0.00072 13.3 0.0 47 89 11 53 3 73 0.83 # 677 # 928 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 4_5 - 465 Lycopene_cycl PF05834.7 374 0.00058 12.9 0.1 1 2 0.00055 0.065 6.2 0.0 2 34 8 40 7 46 0.88 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 Lycopene_cycl PF05834.7 374 0.00058 12.9 0.1 2 2 0.0015 0.18 4.7 0.0 3 39 161 195 159 238 0.83 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 Lycopene_cycl PF05834.7 374 0.00075 12.5 0.1 1 1 1.1e-05 0.0012 11.8 0.1 1 39 15 51 15 58 0.87 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 8_7 - 308 ABC_tran PF00005.22 137 0.0046 11.4 0.0 1 1 2e-05 0.0046 11.4 0.0 14 61 36 82 27 142 0.68 # 4340 # 5263 # 1 # ID=8_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.356 4_5 - 465 K_oxygenase PF13434.1 341 1.7e-05 18.0 1.3 1 3 0.094 22 -2.2 0.0 189 222 4 37 2 41 0.85 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 K_oxygenase PF13434.1 341 1.7e-05 18.0 1.3 2 3 5.8e-07 0.00014 15.0 0.0 140 233 99 198 76 206 0.72 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 K_oxygenase PF13434.1 341 1.7e-05 18.0 1.3 3 3 0.0069 1.6 1.6 0.1 282 339 202 256 193 258 0.78 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 2_19 - 541 Eco57I PF07669.6 106 4.7e-09 30.7 0.0 1 1 1.2e-10 2.8e-08 28.2 0.0 3 104 308 418 306 420 0.87 # 18427 # 20049 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.436 2_26 - 844 IPPT PF01715.12 253 0.0011 12.1 0.0 1 2 0.091 21 -2.0 0.0 151 181 300 330 289 347 0.84 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 2_26 - 844 IPPT PF01715.12 253 0.0011 12.1 0.0 2 2 2.2e-05 0.0052 9.9 0.0 166 215 611 659 596 675 0.85 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_27 - 373 GLF PF03275.8 204 6.3e-90 294.2 8.2 1 1 4.3e-92 1e-89 293.5 8.2 1 204 149 353 149 353 0.98 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 4_5 - 465 UDPG_MGDP_dh_N PF03721.9 185 0.0011 12.5 0.1 1 1 7.3e-06 0.0017 11.8 0.1 2 52 159 209 158 271 0.75 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 NAD_binding_10 PF13460.1 183 0.00063 13.9 0.1 1 1 1.1e-05 0.0026 11.9 0.1 2 36 161 194 160 278 0.90 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 FAD_oxidored PF12831.2 428 4.6e-08 26.6 0.0 1 1 1.1e-09 8.9e-08 25.6 0.0 1 140 15 195 15 198 0.74 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_27 - 373 FAD_oxidored PF12831.2 428 0.00012 15.3 0.1 1 1 4.5e-06 0.00036 13.8 0.1 1 67 5 74 5 125 0.70 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 4_5 - 465 FAD_oxidored PF12831.2 428 0.00058 13.1 0.1 1 2 8.1e-05 0.0064 9.7 0.0 2 21 8 27 7 44 0.83 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 FAD_oxidored PF12831.2 428 0.00058 13.1 0.1 2 2 0.031 2.5 1.1 0.1 86 131 195 236 151 247 0.65 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 DAO PF01266.19 358 1e-09 31.8 0.3 1 3 0.027 1.3 1.9 0.0 2 31 8 39 7 56 0.82 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 DAO PF01266.19 358 1e-09 31.8 0.3 2 3 9.8e-06 0.00046 13.2 0.0 154 201 68 116 48 120 0.90 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 DAO PF01266.19 358 1e-09 31.8 0.3 3 3 1.3e-05 0.00059 12.9 0.0 2 32 160 191 159 232 0.93 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_11 - 594 DAO PF01266.19 358 1.9e-07 24.4 0.0 1 1 7.9e-09 3.7e-07 23.4 0.0 1 50 15 77 15 138 0.76 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_27 - 373 DAO PF01266.19 358 3.4e-07 23.5 0.0 1 1 1.1e-08 5.2e-07 22.9 0.0 1 35 5 40 5 79 0.91 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 10_4 - 590 DAO PF01266.19 358 4.5e-05 16.6 0.0 1 2 3.8e-05 0.0018 11.3 0.0 4 36 27 63 24 102 0.90 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 DAO PF01266.19 358 4.5e-05 16.6 0.0 2 2 0.014 0.67 2.8 0.0 146 179 226 259 217 297 0.80 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 591 DAO PF01266.19 358 0.00016 14.7 0.0 1 1 1.1e-05 0.00051 13.1 0.0 4 48 27 79 24 153 0.75 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 4_11 - 594 ThiF PF00899.16 136 0.0014 12.6 0.3 1 2 0.0017 0.4 4.6 0.0 4 23 15 34 12 44 0.83 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_11 - 594 ThiF PF00899.16 136 0.0014 12.6 0.3 2 2 0.00079 0.19 5.7 0.0 54 105 333 385 306 396 0.79 # 10069 # 11850 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_20 - 1056 ResIII PF04851.10 184 8e-34 111.2 1.5 1 1 1.2e-35 2.9e-33 109.4 0.7 4 183 261 431 258 432 0.92 # 20063 # 23230 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.447 4_5 - 465 NAD_binding_9 PF13454.1 156 0.00076 13.4 0.1 1 2 0.05 3.9 1.3 0.0 2 42 10 51 9 62 0.80 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 NAD_binding_9 PF13454.1 156 0.00076 13.4 0.1 2 2 0.00029 0.023 8.6 0.0 1 37 161 192 161 249 0.76 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 10_4 - 590 NAD_binding_9 PF13454.1 156 0.00088 13.2 0.3 1 1 3.2e-05 0.0025 11.7 0.3 2 36 27 60 26 69 0.84 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_41 - 591 NAD_binding_9 PF13454.1 156 0.0016 12.4 0.1 1 1 5.3e-05 0.0041 11.0 0.1 2 41 27 64 26 75 0.84 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_20 - 1056 DEAD PF00270.24 169 6.4e-10 32.9 3.8 1 2 7.3e-12 1.7e-09 31.5 0.1 3 141 264 415 262 437 0.68 # 20063 # 23230 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.447 2_20 - 1056 DEAD PF00270.24 169 6.4e-10 32.9 3.8 2 2 0.01 2.5 1.7 0.1 45 92 514 619 458 639 0.67 # 20063 # 23230 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.447 4_5 - 465 Pyr_redox PF00070.22 80 3.7e-21 69.5 0.7 1 3 0.018 1.1 3.9 0.0 2 28 8 36 7 57 0.82 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 Pyr_redox PF00070.22 80 3.7e-21 69.5 0.7 2 3 0.00049 0.029 9.0 0.0 47 74 68 95 59 101 0.81 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 4_5 - 465 Pyr_redox PF00070.22 80 3.7e-21 69.5 0.7 3 3 1.1e-17 6.3e-16 52.7 0.3 2 78 160 234 159 240 0.94 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 10_4 - 590 Pyr_redox PF00070.22 80 1.4e-06 22.8 0.9 1 2 0.0015 0.089 7.4 0.2 3 34 26 61 24 72 0.76 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 10_4 - 590 Pyr_redox PF00070.22 80 1.4e-06 22.8 0.9 2 2 1.8e-05 0.0011 13.6 0.0 10 76 194 266 193 274 0.79 # 1082 # 2851 # 1 # ID=10_4;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_27 - 373 Pyr_redox PF00070.22 80 4.4e-06 21.2 0.1 1 1 1.6e-07 9.6e-06 20.1 0.1 3 42 7 47 5 54 0.90 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 1_41 - 591 Pyr_redox PF00070.22 80 0.0012 13.4 1.2 1 2 0.004 0.24 6.0 0.2 3 32 26 59 24 69 0.76 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 1_41 - 591 Pyr_redox PF00070.22 80 0.0012 13.4 1.2 2 2 0.0083 0.49 5.0 0.0 41 71 227 257 219 272 0.79 # 31851 # 33623 # -1 # ID=1_41;partial=00;start_type=GTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.412 2_26 - 844 Sigma54_activ_2 PF14532.1 138 3.4e-10 34.2 0.0 1 1 4.7e-12 1.1e-09 32.6 0.0 5 113 77 208 75 227 0.79 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 1_29 - 88 AAA_32 PF13654.1 509 0.00057 12.7 1.1 1 1 2.7e-06 0.00063 12.5 1.1 111 187 2 77 1 83 0.88 # 24990 # 25253 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.409 1_27 - 373 Amino_oxidase PF01593.19 450 0.0017 11.5 0.0 1 1 1.5e-05 0.0035 10.5 0.0 14 60 26 71 19 109 0.85 # 22555 # 23673 # -1 # ID=1_27;partial=00;start_type=TTG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.399 4_5 - 465 TrkA_N PF02254.13 116 0.00048 14.3 0.4 1 1 1.3e-05 0.003 11.7 0.1 2 51 161 210 160 227 0.87 # 4105 # 5499 # -1 # ID=4_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.405 2_6 - 116 Terminase_GpA PF05876.7 557 0.0015 11.0 0.1 1 1 7.8e-06 0.0018 10.7 0.1 184 239 45 110 40 112 0.73 # 5939 # 6286 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.454 8_1 - 270 AAA_24 PF13479.1 213 2.5e-05 18.1 0.0 1 1 2.3e-07 5.5e-05 16.9 0.0 11 75 10 128 6 129 0.88 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 2_26 - 844 NACHT PF05729.7 166 0.00015 15.6 0.0 1 2 3.6e-05 0.0084 9.9 0.0 2 48 97 142 96 173 0.78 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 2_26 - 844 NACHT PF05729.7 166 0.00015 15.6 0.0 2 2 0.0085 2 2.1 0.1 16 79 443 506 442 507 0.80 # 26774 # 29305 # 1 # ID=2_26;partial=00;start_type=TTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.441 8_1 - 270 APS_kinase PF01583.15 157 0.0021 11.9 0.0 1 2 4.8e-05 0.011 9.5 0.0 10 40 10 40 2 63 0.87 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 8_1 - 270 APS_kinase PF01583.15 157 0.0021 11.9 0.0 2 2 0.067 16 -0.8 0.0 69 89 135 155 132 165 0.87 # 399 # 1208 # 1 # ID=8_1;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.364 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/bb82e3ef-8803-4002-8c8e-83729e7133c2 # Target file: checkm_output/bins/pGCA_001908455.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001908455.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/bb82e3ef-8803-4002-8c8e-83729e7133c2 checkm_output/bins/pGCA_001908455.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:08 2020 # [ok]