# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_44 - 576 Mg_chelatase PF01078.16 207 9.8e-05 13.5 0.0 1 1 4.7e-06 0.00025 12.2 0.0 7 59 342 394 337 413 0.82 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_21 - 533 UPF0020 PF01170.13 180 9.9e-08 23.7 0.0 1 1 5.7e-09 3e-07 22.2 0.0 8 119 196 305 190 311 0.76 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_11 - 264 MipZ PF09140.6 261 1.8e-07 22.4 0.0 1 1 1.1e-08 5.9e-07 20.7 0.0 2 129 3 148 2 176 0.63 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 264 YhjQ PF06564.7 244 1.4e-08 26.3 0.0 1 1 6.9e-10 3.6e-08 25.0 0.0 1 149 1 149 1 167 0.73 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_46 - 302 3HCDH_N PF02737.13 180 7.5e-05 14.4 0.1 1 2 0.063 3.3 -0.7 0.0 14 44 4 34 2 57 0.76 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 3HCDH_N PF02737.13 180 7.5e-05 14.4 0.1 2 2 6.1e-06 0.00032 12.4 0.0 1 39 132 170 132 194 0.85 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_28 - 136 GIDA PF01134.17 392 2.8e-11 34.8 0.5 1 1 1.1e-12 2.8e-11 34.8 0.5 1 48 24 74 24 123 0.74 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 GIDA PF01134.17 392 5.3e-08 24.0 0.5 1 1 2.1e-09 5.5e-08 24.0 0.5 1 34 10 43 10 60 0.88 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_44 - 576 CoaE PF01121.15 180 0.00019 12.8 0.2 1 2 0.014 0.74 1.1 0.0 85 130 30 74 25 109 0.86 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_44 - 576 CoaE PF01121.15 180 0.00019 12.8 0.2 2 2 5.6e-05 0.0029 9.0 0.1 2 22 359 379 358 407 0.92 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_28 - 136 Pyr_redox_2 PF07992.9 201 3.9e-10 31.9 0.1 1 1 1.7e-11 4.4e-10 31.7 0.1 1 52 24 75 24 122 0.76 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 Pyr_redox_2 PF07992.9 201 6.3e-07 21.4 0.1 1 1 2.4e-08 6.3e-07 21.4 0.1 1 30 10 39 10 66 0.87 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_15 - 417 Usp PF00582.21 140 0.0018 10.4 6.7 1 2 6.6e-05 0.0034 9.6 2.1 3 94 19 111 17 115 0.74 # 10025 # 11275 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_15 - 417 Usp PF00582.21 140 0.0018 10.4 6.7 2 2 0.0079 0.41 2.8 0.2 47 132 264 349 254 355 0.67 # 10025 # 11275 # 1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.529 1_44 - 576 DUF87 PF01935.12 229 2.2e-05 16.3 0.7 1 1 2.5e-06 6.6e-05 14.7 0.6 26 45 360 379 357 390 0.86 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 DUF87 PF01935.12 229 6.5e-05 14.8 0.0 1 1 5.9e-06 0.00015 13.5 0.0 24 43 373 392 351 406 0.75 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 NB-ARC PF00931.17 287 9.7e-05 13.2 0.1 1 1 9e-06 0.00023 12.0 0.1 20 40 358 378 345 388 0.88 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 NB-ARC PF00931.17 287 0.00032 11.5 0.2 1 1 2.9e-05 0.00074 10.3 0.1 20 41 373 394 360 408 0.83 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 AAA_22 PF13401.1 131 3.9e-06 19.0 0.1 1 1 1.2e-06 2.1e-05 16.7 0.1 4 98 372 511 367 545 0.60 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_22 PF13401.1 131 3.8e-05 15.8 2.4 1 1 3.6e-06 6.2e-05 15.2 0.5 6 75 359 442 355 555 0.63 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_11 - 264 AAA_22 PF13401.1 131 8.6e-05 14.7 0.1 1 1 3.6e-05 0.00062 11.9 0.0 14 53 12 46 6 54 0.87 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_28 - 136 Trp_halogenase PF04820.9 454 1.1e-06 19.4 0.5 1 1 2.5e-08 1.3e-06 19.2 0.5 1 67 24 88 24 110 0.87 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_46 - 302 NAD_binding_7 PF13241.1 103 3.5e-05 16.0 0.1 1 1 4.9e-06 0.00013 14.3 0.0 5 71 128 194 126 236 0.80 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_28 - 136 NAD_binding_7 PF13241.1 103 3.9e-05 15.9 0.7 1 1 2.1e-06 5.5e-05 15.4 0.7 8 45 23 70 19 126 0.67 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_44 - 576 AAA_17 PF13207.1 121 2.1e-07 23.8 0.0 1 1 1.8e-08 4.8e-07 22.7 0.0 2 24 360 382 359 481 0.74 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_17 PF13207.1 121 1.4e-06 21.2 0.0 1 1 1.3e-07 3.5e-06 19.9 0.0 2 26 375 399 374 486 0.81 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 AAA_21 PF13304.1 303 1.2e-07 24.0 1.9 1 2 2.3e-06 6.1e-05 15.0 0.1 3 37 376 412 374 443 0.71 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 AAA_21 PF13304.1 303 1.2e-07 24.0 1.9 2 2 0.00074 0.019 6.8 0.0 235 272 481 515 456 538 0.82 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_21 PF13304.1 303 5.9e-06 18.3 0.1 1 1 2.8e-06 7.4e-05 14.7 0.1 3 25 361 387 359 501 0.83 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 MobB PF03205.9 140 4e-05 15.3 0.4 1 1 1.4e-05 0.00024 12.8 0.0 3 20 375 392 373 439 0.89 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_11 - 264 MobB PF03205.9 140 7.2e-05 14.5 0.0 1 1 9.5e-06 0.00016 13.3 0.0 10 45 12 45 2 49 0.88 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_44 - 576 MobB PF03205.9 140 0.00012 13.8 0.0 1 1 2.5e-05 0.00043 12.0 0.0 2 22 359 379 358 382 0.89 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_20 - 699 Helicase_C PF00271.26 78 0.00014 13.7 0.0 1 1 7.9e-06 0.00041 12.2 0.0 22 77 309 364 291 365 0.87 # 14496 # 16592 # 1 # ID=1_20;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 1_11 - 264 ArsA_ATPase PF02374.10 305 2.1e-10 32.1 0.2 1 1 1e-11 5.3e-10 30.7 0.0 1 49 1 50 1 131 0.76 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 586 T2SE PF00437.15 272 7.9e-06 16.9 0.0 1 1 3.1e-07 1.6e-05 15.9 0.0 99 148 343 392 337 416 0.87 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_46 - 302 AdoHcyase_NAD PF00670.16 162 3.3e-07 22.3 0.1 1 1 1.5e-08 8e-07 21.0 0.1 21 136 128 243 124 248 0.79 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 Shikimate_DH PF01488.15 135 1.2e-05 17.4 0.4 1 2 0.06 1.6 0.9 0.0 63 83 22 42 10 79 0.79 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 Shikimate_DH PF01488.15 135 1.2e-05 17.4 0.4 2 2 6.2e-06 0.00016 13.8 0.1 8 100 126 211 120 228 0.74 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_28 - 136 Shikimate_DH PF01488.15 135 0.00014 14.0 0.3 1 1 9.1e-06 0.00024 13.2 0.3 12 41 22 51 14 56 0.92 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_44 - 576 Zeta_toxin PF06414.7 201 2.5e-06 18.7 0.1 1 1 2.2e-07 5.8e-06 17.5 0.1 19 83 360 418 355 432 0.76 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 Zeta_toxin PF06414.7 201 1.8e-05 15.9 0.0 1 1 1.5e-06 4e-05 14.7 0.0 17 55 373 412 363 440 0.92 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_35 - 81 NAD_binding_8 PF13450.1 68 1.1e-05 17.4 0.7 1 1 7.2e-07 1.9e-05 16.7 0.7 1 26 13 38 13 40 0.94 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_28 - 136 NAD_binding_8 PF13450.1 68 2e-05 16.6 0.1 1 1 1.7e-06 4.4e-05 15.5 0.1 1 29 27 55 27 59 0.94 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_28 - 136 FAD_binding_3 PF01494.14 356 1.2e-07 23.0 1.0 1 2 1.9e-08 4.9e-07 21.0 0.3 1 35 22 56 22 69 0.92 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_28 - 136 FAD_binding_3 PF01494.14 356 1.2e-07 23.0 1.0 2 2 0.026 0.66 0.8 0.0 99 136 82 120 59 129 0.66 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 FAD_binding_3 PF01494.14 356 9.7e-05 13.4 0.1 1 1 4.3e-06 0.00011 13.3 0.1 2 31 9 38 8 49 0.84 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_43 - 586 SMC_N PF02463.14 220 1e-08 26.6 0.8 1 2 0.00021 0.0054 7.9 0.2 25 44 373 392 362 396 0.80 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 SMC_N PF02463.14 220 1e-08 26.6 0.8 2 2 3.2e-07 8.2e-06 17.1 0.0 105 211 397 553 391 560 0.90 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 SMC_N PF02463.14 220 9.3e-07 20.2 3.8 1 1 1.1e-06 2.8e-05 15.4 3.8 26 209 359 536 347 541 0.65 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_11 - 264 VirC1 PF07015.6 231 1.8e-08 25.6 0.0 1 2 1.1e-08 5.7e-07 20.8 0.0 1 46 1 46 1 59 0.91 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 264 VirC1 PF07015.6 231 1.8e-08 25.6 0.0 2 2 0.0029 0.15 3.0 0.0 72 112 106 146 95 224 0.84 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 264 Fer4_NifH PF00142.13 273 9.8e-08 23.4 0.1 1 2 3.6e-07 1.9e-05 15.9 0.0 8 69 10 68 2 81 0.87 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 264 Fer4_NifH PF00142.13 273 9.8e-08 23.4 0.1 2 2 0.00049 0.025 5.7 0.0 186 237 195 248 165 262 0.70 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_44 - 576 AAA_16 PF13191.1 185 7.4e-06 18.0 0.1 1 1 8.1e-07 2.1e-05 16.5 0.1 20 175 355 511 342 522 0.50 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_16 PF13191.1 185 9.6e-05 14.4 0.0 1 1 6.8e-06 0.00018 13.5 0.0 23 46 371 394 359 527 0.78 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 AAA_23 PF13476.1 202 9e-06 18.1 1.0 1 1 1.4e-06 3.7e-05 16.1 0.1 20 39 373 392 360 394 0.79 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_23 PF13476.1 202 5.4e-05 15.5 0.7 1 1 2.1e-06 5.4e-05 15.5 0.7 14 53 349 391 346 575 0.57 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_18 PF13238.1 129 5.4e-06 18.7 0.2 1 2 0.03 0.78 2.1 0.1 49 91 188 230 176 236 0.76 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_43 - 586 AAA_18 PF13238.1 129 5.4e-06 18.7 0.2 2 2 1.1e-05 0.00027 13.2 0.0 1 23 375 407 375 465 0.67 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_18 PF13238.1 129 5.8e-06 18.7 0.0 1 1 5.5e-07 1.4e-05 17.4 0.0 1 23 360 392 360 465 0.74 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_46 - 302 GFO_IDH_MocA PF01408.17 120 6.3e-05 15.5 0.1 1 2 0.082 4.3 -0.1 0.0 52 72 23 44 7 72 0.71 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 GFO_IDH_MocA PF01408.17 120 6.3e-05 15.5 0.1 2 2 9.4e-06 0.00049 12.6 0.0 2 71 132 192 131 209 0.85 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_11 - 264 CbiA PF01656.18 195 1.5e-25 81.7 0.0 1 1 3.7e-27 1.9e-25 81.3 0.0 1 188 4 218 4 225 0.75 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_11 - 264 AAA_14 PF13173.1 128 1e-05 17.4 1.1 1 1 1.6e-06 2.8e-05 16.0 0.4 12 56 12 63 8 175 0.78 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_43 - 586 AAA_14 PF13173.1 128 2.1e-05 16.4 0.1 1 1 1.1e-05 0.0002 13.3 0.1 3 50 373 421 371 552 0.77 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_14 PF13173.1 128 0.00019 13.3 0.0 1 1 4.5e-05 0.00078 11.4 0.0 3 45 358 400 356 423 0.65 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_28 - 136 HI0933_like PF03486.9 409 5.3e-08 23.6 3.6 1 1 3.6e-09 9.4e-08 22.8 3.6 2 35 24 57 23 96 0.90 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 HI0933_like PF03486.9 409 2.2e-07 21.6 0.4 1 1 1e-08 2.6e-07 21.3 0.4 1 30 9 38 9 44 0.93 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_43 - 586 AAA_29 PF13555.1 62 3.7e-06 18.4 0.0 1 1 4.4e-07 1.1e-05 16.9 0.0 13 40 363 389 360 394 0.85 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_29 PF13555.1 62 2.6e-05 15.8 0.1 1 1 2.6e-06 6.7e-05 14.4 0.1 19 40 354 374 347 389 0.78 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_30 - 232 FAD_binding_2 PF00890.19 417 1.1e-18 59.2 0.0 1 1 1.1e-19 1.5e-18 58.8 0.0 278 410 22 203 19 205 0.84 # 24882 # 25577 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.506 1_28 - 136 FAD_binding_2 PF00890.19 417 8.7e-16 49.6 1.8 1 1 7.8e-17 1e-15 49.4 1.8 1 99 24 118 24 132 0.86 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_29 - 106 FAD_binding_2 PF00890.19 417 2e-13 41.9 0.0 1 1 1.9e-14 2.4e-13 41.6 0.0 147 209 30 95 27 104 0.90 # 24458 # 24775 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_35 - 81 FAD_binding_2 PF00890.19 417 1.6e-09 29.0 2.6 1 1 1.5e-10 1.9e-09 28.7 2.6 1 29 10 38 10 45 0.93 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_43 - 586 AAA PF00004.24 132 0.00013 14.2 0.1 1 1 2.1e-05 0.0011 11.2 0.1 2 38 376 479 375 553 0.56 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_28 - 136 Thi4 PF01946.12 230 4.7e-07 21.1 1.3 1 1 2.8e-08 7.2e-07 20.4 0.9 15 49 20 54 12 63 0.88 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 Thi4 PF01946.12 230 6.6e-05 14.0 0.2 1 1 3.1e-06 8.1e-05 13.7 0.2 17 48 8 39 2 48 0.87 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_28 - 136 Pyr_redox_3 PF13738.1 203 7.1e-07 21.4 0.8 1 1 3.4e-08 8.7e-07 21.1 0.8 1 33 26 57 26 119 0.83 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 Pyr_redox_3 PF13738.1 203 0.0005 12.1 0.4 1 1 2.4e-05 0.00063 11.8 0.4 1 26 12 36 12 42 0.89 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_21 - 533 N6_Mtase PF02384.11 311 2.2e-118 386.8 0.0 1 1 5.6e-120 2.9e-118 386.4 0.0 3 308 169 475 167 478 0.98 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_43 - 586 DUF258 PF03193.11 161 0.00011 13.4 0.0 1 1 7.5e-06 0.0002 12.6 0.0 34 66 371 403 345 463 0.84 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 DUF258 PF03193.11 161 0.00013 13.2 0.0 1 1 9.7e-06 0.00025 12.2 0.0 25 67 346 389 332 436 0.88 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_46 - 302 NAD_binding_2 PF03446.10 163 3.5e-10 31.9 0.0 1 2 0.0013 0.066 5.0 0.0 15 46 3 34 2 72 0.85 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 NAD_binding_2 PF03446.10 163 3.5e-10 31.9 0.0 2 2 9.5e-10 4.9e-08 24.9 0.0 2 113 131 238 130 244 0.91 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_11 - 264 AAA_31 PF13614.1 157 2.5e-12 39.0 0.1 1 1 1e-13 5.2e-12 37.9 0.1 1 132 2 132 2 142 0.79 # 6188 # 6979 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.340 1_44 - 576 AAA_33 PF13671.1 143 0.00027 12.8 0.0 1 1 1.1e-05 0.00055 11.8 0.0 2 21 360 379 359 465 0.72 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_21 - 533 Methyltransf_26 PF13659.1 117 9.7e-13 40.2 0.0 1 1 3.8e-14 2e-12 39.2 0.0 3 116 219 353 217 354 0.79 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_35 - 81 NAD_Gly3P_dh_N PF01210.18 157 0.00054 11.7 1.3 1 1 1.4e-05 0.00074 11.3 1.3 2 27 11 36 10 46 0.90 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_46 - 302 2-Hacid_dh_C PF02826.14 178 4.8e-60 193.7 0.0 1 1 1.8e-61 9.6e-60 192.7 0.0 2 178 98 270 97 270 0.96 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_44 - 576 AAA_30 PF13604.1 196 1.5e-05 16.6 0.4 1 1 1.4e-06 3.7e-05 15.3 0.3 4 86 341 434 338 518 0.63 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_30 PF13604.1 196 2e-05 16.2 0.0 1 1 2.1e-06 5.4e-05 14.8 0.0 19 49 373 403 366 528 0.85 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 FtsK_SpoIIIE PF01580.13 205 6.4e-05 14.4 0.1 1 1 7.9e-06 0.0002 12.8 0.0 15 56 334 375 323 384 0.81 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 FtsK_SpoIIIE PF01580.13 205 0.0001 13.8 0.0 1 1 6.7e-06 0.00017 13.0 0.0 27 56 361 390 351 462 0.85 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_21 - 533 MTS PF05175.9 170 2.5e-05 15.7 0.0 1 1 1e-06 5.2e-05 14.6 0.0 32 140 217 352 199 362 0.75 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_28 - 136 Lycopene_cycl PF05834.7 374 6.3e-05 13.9 0.3 1 1 3.4e-06 8.7e-05 13.5 0.3 1 36 24 57 24 62 0.90 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 Lycopene_cycl PF05834.7 374 8.3e-05 13.5 0.3 1 1 3.7e-06 9.5e-05 13.3 0.3 1 29 10 36 10 47 0.83 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_46 - 302 ELFV_dehydrog PF00208.16 244 0.00016 13.3 0.1 1 1 5e-06 0.00026 12.6 0.1 25 137 123 234 113 240 0.72 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_44 - 576 ABC_tran PF00005.22 137 5.3e-35 112.7 0.1 1 1 4.7e-36 1.2e-34 111.5 0.1 1 137 347 496 347 496 0.92 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 ABC_tran PF00005.22 137 6.9e-34 109.1 0.0 1 1 4.5e-35 1.2e-33 108.3 0.0 1 137 362 511 362 511 0.95 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 ATP-synt_ab PF00006.20 215 0.0003 12.3 0.4 1 1 1.2e-05 0.0006 11.3 0.4 10 39 352 381 346 568 0.83 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_21 - 533 Eco57I PF07669.6 106 9e-09 27.7 0.0 1 1 6e-10 3.1e-08 26.0 0.0 2 105 292 404 291 405 0.91 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_43 - 586 AAA_19 PF13245.1 76 2.6e-07 22.4 0.0 1 1 2.4e-08 6.3e-07 21.1 0.0 9 60 372 416 366 439 0.77 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_19 PF13245.1 76 7e-06 17.8 0.2 1 1 1.6e-06 4.2e-05 15.3 0.1 9 56 356 399 350 425 0.68 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_10 PF12846.2 304 2.7e-05 15.6 0.2 1 1 2.5e-06 6.4e-05 14.4 0.2 3 23 374 394 372 405 0.88 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_10 PF12846.2 304 0.00035 12.0 0.5 1 1 3.1e-05 0.0008 10.8 0.2 5 23 361 379 357 390 0.87 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_28 - 136 FAD_oxidored PF12831.2 428 5.5e-10 30.8 0.3 1 1 2.1e-11 5.5e-10 30.8 0.3 1 34 24 57 24 133 0.76 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 FAD_oxidored PF12831.2 428 5.7e-09 27.4 3.6 1 1 2.8e-10 7.4e-09 27.0 3.6 1 29 10 38 10 40 0.96 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_28 - 136 DAO PF01266.19 358 1.1e-06 19.7 0.1 1 1 7.3e-08 1.3e-06 19.5 0.1 1 65 24 96 24 126 0.66 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 DAO PF01266.19 358 1.3e-06 19.5 0.6 1 1 9.2e-08 1.6e-06 19.2 0.6 1 29 10 38 10 40 0.95 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_29 - 106 DAO PF01266.19 358 2e-06 18.8 0.0 1 1 1.3e-07 2.2e-06 18.7 0.0 152 211 29 94 8 104 0.86 # 24458 # 24775 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.459 1_20 - 699 ResIII PF04851.10 184 4.5e-14 44.6 0.3 1 1 1.7e-15 4.5e-14 44.6 0.3 57 183 2 116 1 117 0.80 # 14496 # 16592 # 1 # ID=1_20;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 1_19 - 306 ResIII PF04851.10 184 1.5e-11 36.4 0.0 1 1 1.4e-12 3.8e-11 35.1 0.0 4 50 255 298 253 303 0.88 # 13572 # 14489 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_21 - 533 Methyltransf_31 PF13847.1 152 2.6e-05 15.8 0.0 1 1 2e-06 0.0001 13.9 0.0 2 83 215 302 214 352 0.83 # 16606 # 18204 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_43 - 586 DEAD PF00270.24 169 3.2e-06 18.7 0.4 1 1 6.8e-07 1.8e-05 16.3 0.4 13 146 371 527 364 547 0.69 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_20 - 699 DEAD PF00270.24 169 5.1e-06 18.1 0.8 1 1 6e-07 1.6e-05 16.5 0.0 56 146 7 104 3 121 0.74 # 14496 # 16592 # 1 # ID=1_20;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.438 1_28 - 136 Pyr_redox PF00070.22 80 1.4e-08 27.1 0.9 1 1 7.5e-10 2e-08 26.6 0.9 2 67 25 89 24 103 0.86 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_46 - 302 Pyr_redox PF00070.22 80 4.7e-05 15.8 0.1 1 1 4.5e-06 0.00012 14.5 0.1 2 25 133 156 132 173 0.86 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_46 - 302 IlvN PF07991.7 165 3.5e-08 25.0 0.0 1 1 1.3e-09 6.7e-08 24.0 0.0 2 91 128 215 127 231 0.80 # 37426 # 38331 # 1 # ID=1_46;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.511 1_28 - 136 AlaDh_PNT_C PF01262.16 168 1e-06 20.4 0.6 1 1 4.8e-08 1.2e-06 20.1 0.6 22 53 24 55 17 99 0.88 # 24057 # 24464 # 1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.520 1_35 - 81 AlaDh_PNT_C PF01262.16 168 6.7e-05 14.5 0.2 1 1 3e-06 7.9e-05 14.3 0.2 22 48 10 36 2 49 0.85 # 27744 # 27986 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.510 1_44 - 576 NACHT PF05729.7 166 0.00024 12.8 0.2 1 1 1.6e-05 0.00084 11.0 0.1 3 22 360 379 358 386 0.88 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_44 - 576 AAA_25 PF13481.1 194 1.3e-05 16.6 0.0 1 1 1e-06 2.6e-05 15.6 0.0 19 54 340 378 323 407 0.77 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 1_43 - 586 AAA_25 PF13481.1 194 0.00016 13.1 0.1 1 1 2.1e-05 0.00054 11.4 0.0 18 50 354 389 343 392 0.76 # 33242 # 34999 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.503 1_44 - 576 AAA_5 PF07728.9 139 0.00017 13.3 0.1 1 1 1.1e-05 0.00057 11.6 0.0 4 25 362 384 360 455 0.89 # 34999 # 36726 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.531 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f4cf483c-948a-474a-b6eb-0d54bd2963b5 # Target file: checkm_output/bins/pGCA_001908415.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001908415.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f4cf483c-948a-474a-b6eb-0d54bd2963b5 checkm_output/bins/pGCA_001908415.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:05 2020 # [ok]