# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_38 - 140 cobW PF02492.14 178 4e-05 16.0 0.0 1 1 4.9e-07 4.9e-05 15.7 0.0 4 26 51 72 48 97 0.85 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_22 - 135 Seryl_tRNA_N PF02403.17 108 5.5e-06 19.3 5.0 1 1 7.9e-08 7.8e-06 18.8 5.0 5 90 47 129 45 133 0.91 # 12242 # 12646 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.356 2_23 - 157 SSB PF00436.20 104 4.7e-39 125.4 0.1 1 1 6.3e-41 6.3e-39 125.0 0.1 1 104 2 103 2 103 0.98 # 13982 # 14452 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 2_38 - 140 DUF87 PF01935.12 229 0.00063 12.5 0.1 1 1 8.3e-06 0.00083 12.1 0.1 29 69 53 101 49 130 0.72 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 NB-ARC PF00931.17 287 3.6e-05 15.6 0.1 1 1 4.3e-07 4.2e-05 15.3 0.1 22 49 50 77 34 101 0.89 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 Septin PF00735.13 281 0.0003 12.7 0.0 1 1 3.4e-06 0.00033 12.6 0.0 5 66 48 111 44 134 0.73 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 AAA_22 PF13401.1 131 8.6e-05 15.6 0.0 1 1 1.3e-06 0.00013 15.0 0.0 7 31 50 74 44 138 0.67 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 Miro PF08477.8 119 1e-05 19.0 0.1 1 1 1.3e-07 1.2e-05 18.7 0.1 2 36 50 84 49 124 0.71 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 MobB PF03205.9 140 0.0003 13.4 0.0 1 1 4.4e-06 0.00044 12.9 0.0 4 27 51 74 49 104 0.89 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 MCM PF00493.18 331 0.00052 11.7 0.0 1 1 6.7e-06 0.00066 11.4 0.0 51 89 41 80 31 100 0.83 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_37 - 403 T2SE PF00437.15 272 3.9e-41 133.6 0.0 1 1 1.2e-42 5.8e-41 133.0 0.0 10 249 72 315 63 337 0.85 # 24982 # 26190 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.378 2_38 - 140 T2SE PF00437.15 272 8.8e-05 14.4 0.0 1 1 2.1e-06 0.00011 14.1 0.0 126 151 45 70 25 88 0.83 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 Zeta_toxin PF06414.7 201 5.3e-05 15.2 0.0 1 1 7.6e-07 7.6e-05 14.7 0.0 19 47 50 79 40 80 0.91 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 Arch_ATPase PF01637.13 234 0.00019 14.1 0.0 1 1 1.9e-06 0.00019 14.1 0.0 22 48 49 75 37 133 0.86 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 AAA_16 PF13191.1 185 3.8e-05 16.6 0.0 1 1 3.9e-07 3.9e-05 16.6 0.0 26 51 49 74 36 118 0.85 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 AAA_18 PF13238.1 129 4.1e-06 20.0 0.1 1 1 5.8e-08 5.8e-06 19.6 0.1 2 79 51 128 51 132 0.71 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 AAA_29 PF13555.1 62 5.3e-07 22.0 0.1 1 1 9.5e-09 9.4e-07 21.3 0.1 7 40 34 64 29 69 0.88 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 MMR_HSR1 PF01926.18 116 5.8e-05 16.0 0.1 1 1 8e-07 7.9e-05 15.5 0.1 2 37 50 94 49 130 0.65 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 DUF258 PF03193.11 161 0.00036 12.6 0.0 1 1 4.6e-06 0.00045 12.3 0.0 38 75 50 87 29 105 0.84 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_49 - 787 TraG-D_C PF12696.2 128 7.9e-31 99.5 0.0 1 1 1.9e-32 1.9e-30 98.3 0.0 1 128 433 552 433 552 0.89 # 32053 # 34413 # 1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_38 - 140 NTPase_1 PF03266.10 168 3e-06 19.9 0.1 1 1 3.7e-08 3.6e-06 19.6 0.1 2 34 50 82 49 135 0.73 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 FtsK_SpoIIIE PF01580.13 205 2.2e-05 16.9 0.0 1 1 3.1e-07 3.1e-05 16.4 0.0 28 64 31 73 19 76 0.86 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 ABC_tran PF00005.22 137 0.00017 14.8 0.2 1 1 3e-06 0.00029 14.0 0.1 15 36 51 72 48 100 0.84 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_37 - 223 AAA_10 PF12846.2 304 1e-28 93.5 1.2 1 1 2.5e-30 1.2e-28 93.2 1.2 155 300 2 175 1 180 0.93 # 24270 # 24938 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_38 - 140 AAA_10 PF12846.2 304 3e-18 59.1 0.5 1 1 7.5e-20 3.7e-18 58.8 0.5 2 70 48 115 47 137 0.89 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_37 - 223 ResIII PF04851.10 184 0.00012 14.8 0.1 1 1 2.2e-06 0.00022 14.0 0.0 111 163 25 98 19 154 0.77 # 24270 # 24938 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_37 - 223 Zot PF05707.7 193 3.3e-07 22.8 0.1 1 1 4.9e-09 4.8e-07 22.3 0.1 53 129 54 129 17 133 0.73 # 24270 # 24938 # -1 # ID=2_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_38 - 140 Viral_helicase1 PF01443.13 234 0.00017 14.0 0.1 1 1 2.1e-06 0.00021 13.7 0.1 3 22 52 71 50 135 0.76 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_49 - 787 DEAD PF00270.24 169 0.00021 13.7 0.0 1 1 3.5e-06 0.00035 13.0 0.0 16 46 159 195 149 392 0.79 # 32053 # 34413 # 1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_38 - 140 DUF815 PF05673.8 250 0.00045 12.0 0.1 1 2 0.0085 0.84 1.3 0.0 178 211 13 46 10 50 0.87 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 DUF815 PF05673.8 250 0.00045 12.0 0.1 2 2 3.4e-05 0.0034 9.2 0.1 55 81 49 75 41 82 0.87 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_49 - 787 TrwB_AAD_bind PF10412.4 386 8.7e-24 76.6 0.1 1 2 1.3e-05 0.00066 11.2 0.0 12 61 154 206 149 311 0.70 # 32053 # 34413 # 1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_49 - 787 TrwB_AAD_bind PF10412.4 386 8.7e-24 76.6 0.1 2 2 4e-21 2e-19 62.3 0.0 211 373 399 558 375 568 0.83 # 32053 # 34413 # 1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_38 - 140 TrwB_AAD_bind PF10412.4 386 3.4e-05 15.4 0.2 1 1 9.7e-07 4.8e-05 14.9 0.2 17 57 49 89 39 98 0.91 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 1_37 - 403 Sigma54_activ_2 PF14532.1 138 0.00046 13.1 0.0 1 1 3.8e-05 0.0037 10.2 0.0 15 44 183 212 177 291 0.71 # 24982 # 26190 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_49 - 787 T4SS-DNA_transf PF02534.9 469 8.5e-52 169.1 0.1 1 1 1.2e-53 1.2e-51 168.6 0.1 35 440 148 567 112 587 0.80 # 32053 # 34413 # 1 # ID=1_49;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 2_38 - 140 AAA_32 PF13654.1 509 5.6e-06 18.1 0.1 1 1 7.5e-08 7.4e-06 17.7 0.1 29 57 46 74 41 79 0.88 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 Pox_A32 PF04665.7 241 0.00018 13.7 0.1 1 1 2.5e-06 0.00025 13.2 0.1 8 40 42 74 37 83 0.83 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 GTP_EFTU PF00009.22 188 7.1e-05 15.2 0.0 1 1 8.8e-07 8.7e-05 14.9 0.0 4 30 48 74 45 112 0.66 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 RNA_helicase PF00910.17 107 0.00075 12.6 0.3 1 2 0.023 2.3 1.4 0.0 43 68 23 49 13 53 0.81 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_38 - 140 RNA_helicase PF00910.17 107 0.00075 12.6 0.3 2 2 4.7e-05 0.0047 10.0 0.1 2 26 51 75 50 93 0.81 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 2_23 - 157 tRNA_anti-codon PF01336.20 75 3.8e-06 19.7 0.0 1 1 6.7e-08 6.6e-06 18.9 0.0 27 67 47 95 36 103 0.78 # 13982 # 14452 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 2_38 - 140 NACHT PF05729.7 166 1.5e-05 17.6 0.0 1 1 2e-07 2e-05 17.2 0.0 3 27 50 74 48 82 0.87 # 25175 # 25594 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.381 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/685966e4-6ba0-4d0f-8bb0-c49f541140a6 # Target file: checkm_output/bins/pGCA_001902555.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001902555.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/685966e4-6ba0-4d0f-8bb0-c49f541140a6 checkm_output/bins/pGCA_001902555.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:04 2020 # [ok]