# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 939 UPF0020 PF01170.13 180 6.7e-17 54.2 0.0 1 1 2.9e-18 2.4e-16 52.4 0.0 16 122 295 403 291 462 0.73 # 1 # 2817 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_39 - 448 Terminase_6 PF03237.10 384 1.3e-14 46.3 0.1 1 1 2e-16 1.6e-14 46.0 0.1 3 306 26 338 24 365 0.75 # 28777 # 30120 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_25 - 214 IstB_IS21 PF01695.12 178 1e-13 43.7 0.0 1 1 1.8e-15 1.4e-13 43.2 0.0 32 118 34 122 11 149 0.75 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_25 - 214 AAA_17 PF13207.1 121 2.5e-05 17.7 0.1 1 1 5.7e-07 4.5e-05 16.9 0.1 3 64 52 121 51 209 0.61 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_21 - 663 AAA_21 PF13304.1 303 1.8e-07 23.9 7.1 1 3 2.2e-09 1.8e-07 23.9 7.1 4 203 31 206 28 247 0.71 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_21 PF13304.1 303 1.8e-07 23.9 7.1 2 3 0.07 5.6 -0.7 2.4 156 216 276 334 225 364 0.60 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_21 PF13304.1 303 1.8e-07 23.9 7.1 3 3 0.005 0.4 3.1 4.8 37 164 491 616 480 652 0.86 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_25 - 214 PhoH PF02562.11 205 1.1e-05 17.3 0.0 1 1 2e-07 1.6e-05 16.8 0.0 16 66 43 94 32 131 0.80 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_25 - 214 Zeta_toxin PF06414.7 201 4.7e-06 18.4 0.0 1 1 9.3e-08 7.4e-06 17.7 0.0 21 74 53 105 36 152 0.83 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_21 - 663 SMC_N PF02463.14 220 2.9e-10 32.3 2.0 1 1 3.6e-12 2.9e-10 32.3 2.0 2 129 7 137 6 339 0.91 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_23 PF13476.1 202 2.6e-11 36.8 82.6 1 1 0.027 1.1 2.1 82.6 1 194 9 495 9 564 0.60 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_25 - 214 AAA_23 PF13476.1 202 3.1e-05 16.9 0.1 1 1 9.7e-07 3.9e-05 16.6 0.1 3 115 36 156 34 193 0.62 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_25 - 214 AAA_18 PF13238.1 129 5.5e-05 16.1 0.0 1 1 1.4e-06 0.00011 15.1 0.0 3 106 53 176 52 210 0.71 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_21 - 663 AAA_13 PF13166.1 712 0.0004 11.5 0.1 1 3 5e-06 0.0004 11.5 0.1 14 48 24 58 12 82 0.80 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_13 PF13166.1 712 0.0004 11.5 0.1 2 3 0.0075 0.6 1.0 15.8 277 471 152 341 136 346 0.68 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_13 PF13166.1 712 0.0004 11.5 0.1 3 3 0.0007 0.056 4.4 27.7 243 443 344 546 335 562 0.75 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 AAA_29 PF13555.1 62 1.2e-07 23.8 0.1 1 1 3e-09 2.4e-07 22.9 0.1 1 51 7 54 7 61 0.83 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_25 - 214 Bac_DnaA PF00308.13 219 4.4e-08 25.6 0.1 1 1 8.7e-10 6.9e-08 24.9 0.1 32 106 46 121 25 131 0.88 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_43 - 90 MRP-L47 PF06984.8 87 0.00012 14.5 0.5 1 1 2.3e-06 0.00018 14.0 0.5 18 68 14 65 2 87 0.60 # 33106 # 33375 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_1 - 939 N6_Mtase PF02384.11 311 2e-52 170.7 1.9 1 1 4.6e-54 3.7e-52 169.8 1.9 3 309 265 574 263 576 0.85 # 1 # 2817 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_1 - 939 Methyltransf_26 PF13659.1 117 1.9e-12 39.9 0.0 1 1 7e-14 5.6e-12 38.4 0.0 1 116 308 440 308 441 0.81 # 1 # 2817 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_21 - 663 DUF2813 PF11398.3 373 1.1e-07 23.8 0.1 1 2 1.4e-09 1.1e-07 23.8 0.1 2 66 6 67 5 86 0.80 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 DUF2813 PF11398.3 373 1.1e-07 23.8 0.1 2 2 0.089 7.2 -1.9 0.0 217 269 120 171 66 192 0.59 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_1 - 939 Eco57I PF07669.6 106 1.4e-07 24.5 0.1 1 1 7.6e-09 6.1e-07 22.4 0.1 3 105 388 491 386 492 0.85 # 1 # 2817 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.296 1_25 - 214 AAA_19 PF13245.1 76 2.7e-05 16.5 0.0 1 1 5.4e-07 4.3e-05 15.9 0.0 16 59 54 94 42 113 0.76 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_25 - 214 Viral_helicase1 PF01443.13 234 0.00068 11.7 0.0 1 1 1.2e-05 0.001 11.2 0.0 5 76 55 126 53 146 0.76 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_39 - 448 Terminase_3 PF04466.8 387 5.6e-127 416.5 2.7 1 1 8.2e-129 6.6e-127 416.3 2.7 3 385 21 409 19 411 0.98 # 28777 # 30120 # 1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.321 1_25 - 214 ArgK PF03308.11 267 0.00059 11.2 0.0 1 1 1.2e-05 0.00095 10.5 0.0 30 63 49 82 28 85 0.87 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_21 - 663 tRNA-synt_His PF13393.1 311 0.017 6.7 6.0 1 2 7.2e-05 0.0058 8.2 0.5 189 263 380 457 363 458 0.79 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_21 - 663 tRNA-synt_His PF13393.1 311 0.017 6.7 6.0 2 2 0.034 2.7 -0.5 0.1 11 57 486 532 464 539 0.73 # 15561 # 17549 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.342 1_25 - 214 RNA_helicase PF00910.17 107 4.1e-06 19.6 0.0 1 1 1.8e-07 1.4e-05 17.8 0.0 3 64 53 127 51 135 0.78 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_46 - 213 Ribosomal_L29 PF00831.18 58 1.5e-05 17.2 1.4 1 2 0.021 1.7 1.1 0.1 7 19 69 81 51 83 0.72 # 33827 # 34465 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_46 - 213 Ribosomal_L29 PF00831.18 58 1.5e-05 17.2 1.4 2 2 1.9e-07 1.5e-05 17.2 1.4 2 42 79 121 78 123 0.85 # 33827 # 34465 # 1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.324 1_43 - 90 Terminase_GpA PF05876.7 557 8.8e-05 13.5 0.2 1 1 1.3e-06 0.0001 13.3 0.2 201 248 10 56 7 69 0.88 # 33106 # 33375 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.270 1_25 - 214 AAA_25 PF13481.1 194 7.4e-05 14.8 0.1 1 1 2.2e-06 0.00018 13.5 0.1 36 59 51 74 45 85 0.82 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 1_25 - 214 AAA_5 PF07728.9 139 0.00042 12.7 0.0 1 1 1.1e-05 0.00091 11.6 0.0 4 76 53 123 50 133 0.81 # 20358 # 20999 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.394 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3423fbf2-40b4-42cd-8669-331e683767fc # Target file: checkm_output/bins/pGCA_001902295.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001902295.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3423fbf2-40b4-42cd-8669-331e683767fc checkm_output/bins/pGCA_001902295.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:03 2020 # [ok]