# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_32 - 899 cobW PF02492.14 178 5.5e-05 14.1 0.0 1 1 6.4e-06 0.00023 12.1 0.0 4 22 413 431 411 443 0.85 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 UvrD_C_2 PF13538.1 104 1.5e-12 39.1 0.0 1 1 1.5e-13 5.3e-12 37.3 0.0 17 103 675 759 656 760 0.66 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 1 3 7.1e-08 1.3e-06 19.8 0.0 10 48 399 434 386 445 0.79 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 2 3 0.002 0.036 5.3 0.0 153 226 567 650 502 653 0.72 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 DUF87 PF01935.12 229 3.6e-09 28.2 2.1 3 3 0.087 1.6 -0.1 0.8 120 184 806 878 798 894 0.75 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_2 - 871 DUF87 PF01935.12 229 4.8e-05 14.7 3.3 1 1 5.5e-06 9.9e-05 13.7 0.1 26 63 494 530 486 541 0.92 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_23 - 782 AAA_22 PF13401.1 131 1.4e-06 19.9 0.8 1 2 0.0011 0.019 6.6 0.0 5 28 227 251 221 304 0.70 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 AAA_22 PF13401.1 131 1.4e-06 19.9 0.8 2 2 0.00025 0.0046 8.6 0.0 44 108 499 565 456 577 0.75 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 AAA_22 PF13401.1 131 9.9e-06 17.2 0.0 1 1 4.1e-06 7.4e-05 14.4 0.0 9 100 414 514 410 548 0.66 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_15 PF13175.1 415 0.00012 12.6 0.2 1 1 3.4e-06 0.00012 12.6 0.2 27 85 414 479 385 509 0.79 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_17 PF13207.1 121 0.00035 12.9 0.2 1 1 4.3e-05 0.0015 10.8 0.0 4 60 414 481 412 597 0.63 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 PhoH PF02562.11 205 1e-06 19.6 0.3 1 3 2.3e-05 0.00081 10.1 0.1 4 39 212 246 209 271 0.76 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 PhoH PF02562.11 205 1e-06 19.6 0.3 2 3 0.00066 0.024 5.3 0.0 123 161 549 586 480 623 0.81 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 PhoH PF02562.11 205 1e-06 19.6 0.3 3 3 0.033 1.2 -0.3 0.0 56 115 643 710 642 735 0.75 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 T2SE PF00437.15 272 9.6e-05 12.8 0.0 1 1 4.7e-06 0.00017 12.0 0.0 133 154 414 435 409 442 0.88 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 G-alpha PF00503.15 389 2.7e-05 14.4 0.0 1 1 1.6e-06 5.8e-05 13.3 0.0 63 175 414 582 409 610 0.60 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_16 PF13191.1 185 0.00011 13.7 0.0 1 1 8.2e-06 0.00029 12.3 0.0 29 52 414 439 413 549 0.78 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_23 PF13476.1 202 0.00024 12.9 4.9 1 3 0.096 3.5 -0.7 0.1 172 172 214 214 92 276 0.40 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_23 PF13476.1 202 0.00024 12.9 4.9 2 3 1.7e-05 0.00062 11.6 0.0 24 40 414 430 413 499 0.85 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_23 PF13476.1 202 0.00024 12.9 4.9 3 3 0.029 1 1.0 0.4 88 143 840 878 735 895 0.52 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_18 PF13238.1 129 1.2e-05 17.1 0.1 1 2 0.099 3.6 -0.6 0.0 96 114 244 262 187 272 0.79 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_18 PF13238.1 129 1.2e-05 17.1 0.1 2 2 3.3e-06 0.00012 13.9 0.0 3 53 414 484 413 586 0.69 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_14 PF13173.1 128 1.3e-08 26.3 0.0 1 3 0.077 1.4 0.3 0.0 72 102 317 346 304 359 0.86 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_14 PF13173.1 128 1.3e-08 26.3 0.0 2 3 1.3e-06 2.4e-05 15.7 0.0 7 65 414 473 409 549 0.77 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 AAA_14 PF13173.1 128 1.3e-08 26.3 0.0 3 3 0.0033 0.059 4.8 0.0 28 85 625 687 606 705 0.60 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 AAA_14 PF13173.1 128 0.00022 12.6 3.5 1 2 0.00051 0.0093 7.4 0.0 2 33 226 264 225 308 0.72 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 AAA_14 PF13173.1 128 0.00022 12.6 3.5 2 2 0.0043 0.078 4.4 0.2 28 80 505 564 486 593 0.65 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 AAA_29 PF13555.1 62 1.1e-05 16.5 0.0 1 1 7.6e-07 2.7e-05 15.2 0.0 25 40 411 426 397 430 0.80 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 UvrD_C PF13361.1 351 3.5e-12 37.8 2.9 1 3 0.02 0.7 0.6 0.9 170 240 21 117 2 133 0.67 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 UvrD_C PF13361.1 351 3.5e-12 37.8 2.9 2 3 3.6e-10 1.3e-08 26.1 0.6 2 101 609 695 608 709 0.90 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 UvrD_C PF13361.1 351 3.5e-12 37.8 2.9 3 3 1.5e-08 5.4e-07 20.7 0.1 283 346 706 759 694 762 0.78 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 MMR_HSR1 PF01926.18 116 8.6e-05 14.0 0.0 1 1 1e-05 0.00036 12.0 0.0 3 21 413 431 411 469 0.86 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_2 - 871 DUF258 PF03193.11 161 4e-05 14.3 0.0 1 1 4.7e-06 8.5e-05 13.2 0.0 21 59 476 515 463 534 0.78 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 899 DUF258 PF03193.11 161 0.00027 11.6 0.0 1 1 2.8e-05 0.00051 10.7 0.0 36 58 410 432 387 458 0.80 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 TraG-D_C PF12696.2 128 6e-05 14.4 0.3 1 1 6.8e-06 0.00024 12.4 0.0 3 42 668 706 667 727 0.92 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 AAA_30 PF13604.1 196 4.7e-06 17.7 0.1 1 1 1.1e-06 3.8e-05 14.8 0.0 2 34 213 242 212 268 0.82 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_2 - 871 FtsK_SpoIIIE PF01580.13 205 5.7e-06 17.3 0.0 1 2 0.086 1.5 -0.4 0.0 103 140 71 108 67 173 0.86 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_2 - 871 FtsK_SpoIIIE PF01580.13 205 5.7e-06 17.3 0.0 2 2 2.3e-06 4.1e-05 14.6 0.0 40 81 493 530 459 541 0.82 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 899 FtsK_SpoIIIE PF01580.13 205 0.00037 11.4 0.0 1 1 4.5e-05 0.00081 10.3 0.0 27 64 397 435 386 456 0.78 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 ABC_tran PF00005.22 137 1.5e-06 20.0 0.0 1 1 7.9e-07 1.4e-05 16.9 0.0 12 34 410 432 407 444 0.88 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_2 - 871 ABC_tran PF00005.22 137 7.6e-05 14.5 0.2 1 1 3.2e-05 0.00058 11.6 0.0 14 44 494 524 486 600 0.79 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_23 - 782 AAA_19 PF13245.1 76 4.9e-10 30.6 0.0 1 1 2.8e-11 1e-09 29.6 0.0 4 62 221 280 218 296 0.79 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_2 - 871 AAA_10 PF12846.2 304 1.7e-40 130.7 0.1 1 1 2e-41 3.6e-40 129.7 0.1 3 303 493 802 491 803 0.86 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 899 AAA_10 PF12846.2 304 1.1e-19 62.4 0.0 1 1 1.2e-20 2.1e-19 61.5 0.0 3 301 411 740 409 743 0.78 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_25 - 306 LCM PF04072.9 183 1.2e-41 133.7 0.0 1 1 4.2e-43 1.5e-41 133.4 0.0 2 181 11 206 10 208 0.92 # 20714 # 21631 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.319 1_23 - 782 Viral_helicase1 PF01443.13 234 1.6e-09 29.1 0.1 1 2 1.1e-05 0.00041 11.3 0.0 1 20 229 248 229 302 0.68 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 Viral_helicase1 PF01443.13 234 1.6e-09 29.1 0.1 2 2 6e-06 0.00022 12.3 0.4 54 233 538 760 518 761 0.70 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 DUF2075 PF09848.4 352 1.1e-07 22.5 0.3 1 2 5.2e-06 0.00019 11.9 0.0 2 40 227 269 226 322 0.75 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 DUF2075 PF09848.4 352 1.1e-07 22.5 0.3 2 2 9e-05 0.0033 7.8 0.4 124 241 577 694 507 708 0.75 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 DEAD PF00270.24 169 6.5e-05 13.9 0.5 1 1 9.7e-06 0.00035 11.6 0.3 4 46 217 269 211 456 0.74 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_2 - 871 DUF853 PF05872.7 504 7.6e-05 12.6 0.1 1 1 4.2e-06 0.00015 11.6 0.1 25 65 495 535 480 539 0.93 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 899 TrwB_AAD_bind PF10412.4 386 7e-06 16.2 0.0 1 2 6.2e-05 0.0011 9.0 0.0 7 39 401 433 396 439 0.86 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 TrwB_AAD_bind PF10412.4 386 7e-06 16.2 0.0 2 2 0.0012 0.021 4.8 0.0 194 283 620 704 564 708 0.87 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_2 - 871 TrwB_AAD_bind PF10412.4 386 9.8e-05 12.5 0.1 1 1 1.1e-05 0.0002 11.5 0.1 16 54 492 530 484 533 0.89 # 375 # 2987 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.386 1_32 - 899 ArgK PF03308.11 267 0.00045 10.5 0.0 1 1 2.6e-05 0.00094 9.4 0.0 31 55 411 435 402 452 0.85 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_32 - 899 RNA_helicase PF00910.17 107 0.00011 13.8 0.0 1 1 9e-06 0.00032 12.4 0.0 3 32 414 443 412 457 0.83 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 UvrD-helicase PF00580.16 315 1.1e-15 49.2 17.4 1 3 2.1e-08 7.6e-07 20.1 0.0 2 50 214 265 213 268 0.78 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 UvrD-helicase PF00580.16 315 1.1e-15 49.2 17.4 2 3 2.6e-12 9.4e-11 32.9 8.3 144 307 406 595 285 600 0.58 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_23 - 782 UvrD-helicase PF00580.16 315 1.1e-15 49.2 17.4 3 3 0.029 1 -0.1 0.3 30 102 655 679 599 739 0.62 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 1_32 - 899 NACHT PF05729.7 166 8.5e-05 13.7 0.0 1 1 1.4e-05 0.00025 12.2 0.0 5 33 414 442 412 476 0.84 # 31376 # 34072 # 1 # ID=1_32;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.395 1_23 - 782 NACHT PF05729.7 166 0.00022 12.4 0.0 1 1 3.4e-05 0.0006 10.9 0.0 2 28 228 255 227 284 0.78 # 17391 # 19736 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.360 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/eabc5ff7-9799-4a67-90a0-4afa1bb9a2ff # Target file: checkm_output/bins/pGCA_001895885.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001895885.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/eabc5ff7-9799-4a67-90a0-4afa1bb9a2ff checkm_output/bins/pGCA_001895885.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:02 2020 # [ok]