# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 632 cobW PF02492.14 178 0.0002 13.6 0.0 1 1 4.3e-06 0.00039 12.6 0.0 4 24 241 261 238 273 0.82 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_68 - 135 Seryl_tRNA_N PF02403.17 108 5e-06 19.3 5.0 1 1 7.9e-08 7.1e-06 18.8 5.0 5 90 47 129 45 133 0.91 # 51703 # 52107 # 1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.356 1_23 - 157 SSB PF00436.20 104 4.3e-39 125.4 0.1 1 1 6.3e-41 5.7e-39 125.0 0.1 1 104 2 103 2 103 0.98 # 13913 # 14383 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_37 - 632 DUF87 PF01935.12 229 0.0027 10.3 3.6 1 2 0.031 2.8 0.4 0.2 132 193 64 124 48 148 0.64 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 DUF87 PF01935.12 229 0.0027 10.3 3.6 2 2 6.2e-05 0.0056 9.2 0.5 30 81 244 303 240 464 0.70 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 NB-ARC PF00931.17 287 0.00011 13.8 0.8 1 2 4.4e-06 0.0004 12.0 0.0 22 49 240 267 226 281 0.89 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 NB-ARC PF00931.17 287 0.00011 13.8 0.8 2 2 0.036 3.3 -0.8 0.1 50 112 441 501 427 512 0.69 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_22 PF13401.1 131 8.4e-07 22.0 0.0 1 2 5.7e-06 0.00051 13.0 0.0 7 87 240 334 235 361 0.60 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_22 PF13401.1 131 8.4e-07 22.0 0.0 2 2 0.00084 0.075 5.9 0.0 88 114 483 522 411 539 0.67 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Miro PF08477.8 119 5.3e-05 16.5 0.5 1 1 1.5e-06 0.00013 15.2 0.1 2 31 240 269 239 315 0.74 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_53 - 403 T2SE PF00437.15 272 3.6e-41 133.6 0.0 1 1 1.2e-42 5.2e-41 133.0 0.0 10 249 72 315 63 337 0.85 # 38159 # 39367 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_37 - 632 T2SE PF00437.15 272 0.00046 11.9 0.0 1 1 2.1e-05 0.00092 10.9 0.0 127 151 236 260 214 272 0.83 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Zeta_toxin PF06414.7 201 0.00026 12.9 0.0 1 1 6.4e-06 0.00058 11.7 0.0 19 47 240 269 232 270 0.91 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Arch_ATPase PF01637.13 234 0.00073 12.0 6.5 1 3 0.039 3.6 -0.1 1.0 59 126 81 164 52 168 0.59 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Arch_ATPase PF01637.13 234 0.00073 12.0 6.5 2 3 9.1e-06 0.00082 11.8 0.1 22 88 239 310 228 363 0.57 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Arch_ATPase PF01637.13 234 0.00073 12.0 6.5 3 3 0.025 2.2 0.6 0.0 97 198 396 494 379 512 0.71 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_16 PF13191.1 185 6.6e-05 15.7 0.0 1 2 4.4e-06 0.0004 13.1 0.0 26 51 239 264 227 305 0.86 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_16 PF13191.1 185 6.6e-05 15.7 0.0 2 2 0.084 7.5 -0.8 0.0 134 164 457 504 412 530 0.70 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_18 PF13238.1 129 7.4e-06 19.1 0.7 1 1 7.4e-07 6.6e-05 16.0 0.0 2 79 241 318 241 329 0.70 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_14 PF13173.1 128 0.00016 14.4 1.1 1 2 2.6e-05 0.0024 10.6 0.0 6 85 241 335 237 347 0.55 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_14 PF13173.1 128 0.00016 14.4 1.1 2 2 0.033 3 0.6 0.0 61 78 490 507 427 523 0.78 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_29 PF13555.1 62 3.7e-06 19.2 0.1 1 1 8.3e-08 7.5e-06 18.2 0.1 7 40 224 254 219 259 0.88 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 MMR_HSR1 PF01926.18 116 0.00023 13.9 0.1 1 1 7.8e-06 0.0007 12.3 0.1 2 37 240 284 239 348 0.67 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 DUF258 PF03193.11 161 0.00055 11.9 0.0 1 2 0.026 2.3 0.1 0.0 86 120 145 179 132 183 0.76 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 DUF258 PF03193.11 161 0.00055 11.9 0.0 2 2 5.6e-05 0.005 8.8 0.0 39 75 241 277 225 293 0.84 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_41 - 787 TraG-D_C PF12696.2 128 7.2e-31 99.5 0.0 1 1 1.9e-32 1.7e-30 98.3 0.0 1 128 433 552 433 552 0.89 # 29936 # 32296 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_37 - 632 NTPase_1 PF03266.10 168 1.7e-05 17.3 0.0 1 1 4e-07 3.6e-05 16.3 0.0 2 34 240 272 239 341 0.76 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 FtsK_SpoIIIE PF01580.13 205 8.3e-05 14.9 0.0 1 1 3.3e-06 0.00029 13.1 0.0 29 63 222 262 212 266 0.85 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 ABC_tran PF00005.22 137 0.00035 13.7 0.3 1 1 1.6e-05 0.0015 11.6 0.0 15 36 241 262 237 361 0.85 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_10 PF12846.2 304 1.2e-56 185.1 0.6 1 1 2.2e-58 2e-56 184.4 0.6 2 300 238 584 237 589 0.91 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Zot PF05707.7 193 1.3e-07 24.0 0.4 1 2 0.0093 0.84 1.8 0.0 4 28 241 264 240 331 0.73 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Zot PF05707.7 193 1.3e-07 24.0 0.4 2 2 3.4e-08 3.1e-06 19.5 0.1 54 129 466 538 427 542 0.75 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_41 - 787 DEAD PF00270.24 169 0.0002 13.7 0.0 1 1 3.5e-06 0.00032 13.0 0.0 16 46 159 195 149 392 0.79 # 29936 # 32296 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_41 - 787 TrwB_AAD_bind PF10412.4 386 7.9e-24 76.6 0.1 1 2 1.3e-05 0.0006 11.2 0.0 12 61 154 206 149 311 0.70 # 29936 # 32296 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_41 - 787 TrwB_AAD_bind PF10412.4 386 7.9e-24 76.6 0.1 2 2 4e-21 1.8e-19 62.3 0.0 211 373 399 558 375 568 0.83 # 29936 # 32296 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_37 - 632 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.7 0.3 1 2 1e-05 0.00047 11.5 0.1 17 57 239 279 230 286 0.91 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 TrwB_AAD_bind PF10412.4 386 1.3e-05 16.7 0.3 2 2 0.0072 0.32 2.2 0.0 244 285 491 538 467 542 0.82 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_53 - 403 Sigma54_activ_2 PF14532.1 138 0.00042 13.1 0.0 1 1 3.8e-05 0.0034 10.2 0.0 15 44 183 212 177 291 0.71 # 38159 # 39367 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.378 1_41 - 787 T4SS-DNA_transf PF02534.9 469 7.7e-52 169.1 0.1 1 1 1.2e-53 1.1e-51 168.6 0.1 35 440 148 567 112 587 0.80 # 29936 # 32296 # -1 # ID=1_41;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.371 1_37 - 632 AAA_32 PF13654.1 509 3.4e-07 21.9 2.7 1 2 0.00013 0.012 7.0 0.6 105 193 60 153 50 180 0.82 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 AAA_32 PF13654.1 509 3.4e-07 21.9 2.7 2 2 5.9e-07 5.3e-05 14.7 0.1 29 57 236 264 231 269 0.88 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Pox_A32 PF04665.7 241 7.6e-05 14.8 1.1 1 2 2.2e-05 0.002 10.1 0.1 8 40 232 264 227 272 0.83 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 Pox_A32 PF04665.7 241 7.6e-05 14.8 1.1 2 2 0.0044 0.39 2.7 0.1 95 183 486 580 453 595 0.71 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_37 - 632 GTP_EFTU PF00009.22 188 0.00042 12.5 0.0 1 1 1e-05 0.0009 11.4 0.0 4 29 238 263 235 301 0.70 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 1_23 - 157 tRNA_anti-codon PF01336.20 75 3.4e-06 19.7 0.0 1 1 6.7e-08 6e-06 18.9 0.0 27 67 47 95 36 103 0.78 # 13913 # 14383 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.423 1_37 - 632 NACHT PF05729.7 166 5.8e-05 15.5 0.0 1 1 1.6e-06 0.00014 14.3 0.0 3 26 240 263 238 270 0.87 # 24201 # 26096 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.354 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ef70c640-422b-4917-aed2-cf83f76e0bbd # Target file: checkm_output/bins/pGCA_001890405.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001890405.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ef70c640-422b-4917-aed2-cf83f76e0bbd checkm_output/bins/pGCA_001890405.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:02 2020 # [ok]