# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_12 - 391 DUF87 PF01935.12 229 4e-08 24.2 0.1 1 2 7.1e-09 1.7e-07 22.1 0.0 21 51 138 168 130 174 0.84 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 DUF87 PF01935.12 229 4e-08 24.2 0.1 2 2 0.097 2.3 -1.2 0.0 95 126 197 228 178 273 0.73 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_22 PF13401.1 131 2.3e-09 28.4 0.1 1 1 2.2e-10 5.2e-09 27.3 0.1 4 122 140 279 136 288 0.73 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 T2SE PF00437.15 272 7.2e-07 19.2 0.0 1 1 5.4e-08 1.3e-06 18.3 0.0 121 152 138 164 96 171 0.83 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 Arch_ATPase PF01637.13 234 1.5e-07 22.2 0.1 1 1 1.3e-08 3e-07 21.2 0.1 21 147 141 265 136 277 0.64 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_16 PF13191.1 185 1.7e-05 15.7 0.2 1 1 1.8e-06 4.3e-05 14.4 0.2 24 60 140 180 131 267 0.79 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_23 PF13476.1 202 5.3e-08 24.3 1.5 1 1 2.7e-09 6.5e-08 24.0 0.1 10 84 129 203 111 369 0.79 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_18 PF13238.1 129 1.2e-05 16.6 1.3 1 1 1.3e-06 3.2e-05 15.2 0.5 1 107 143 253 143 268 0.49 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_7 - 733 Rossmann-like PF10727.4 127 0.00013 12.7 0.0 1 1 1.9e-05 0.00044 10.9 0.0 36 69 661 694 634 697 0.88 # 2583 # 4781 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.372 1_12 - 391 AAA_29 PF13555.1 62 1.1e-06 19.0 0.0 1 1 8.5e-08 2e-06 18.2 0.0 16 49 134 166 127 171 0.76 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA PF00004.24 132 0.00017 12.7 0.1 1 1 4.1e-05 0.00099 10.2 0.1 1 57 143 215 143 283 0.68 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 MMR_HSR1 PF01926.18 116 3.2e-05 14.8 0.5 1 1 4e-05 0.00097 10.0 0.5 2 88 143 358 142 386 0.49 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 FtsK_SpoIIIE PF01580.13 205 8e-34 107.7 0.0 1 1 5.1e-35 1.2e-33 107.1 0.0 14 204 116 284 105 285 0.92 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 ABC_tran PF00005.22 137 5e-06 17.8 0.0 1 1 3.5e-07 8.5e-06 17.0 0.0 4 36 133 165 131 316 0.75 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_10 PF12846.2 304 3.9e-10 30.5 0.1 1 2 2.5e-06 5.9e-05 13.4 0.0 2 26 141 165 140 171 0.89 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 AAA_10 PF12846.2 304 3.9e-10 30.5 0.1 2 2 1.1e-06 2.7e-05 14.6 0.0 215 292 235 309 204 317 0.76 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 ResIII PF04851.10 184 5.7e-05 13.9 0.1 1 1 6.7e-06 0.00016 12.4 0.0 3 47 103 162 101 188 0.84 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 Viral_helicase1 PF01443.13 234 9e-05 12.9 0.2 1 1 9.8e-06 0.00023 11.6 0.1 1 35 143 176 143 205 0.68 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 TrwB_AAD_bind PF10412.4 386 1.1e-07 21.7 0.1 1 2 8.6e-07 2.1e-05 14.1 0.0 15 41 140 166 136 171 0.88 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 TrwB_AAD_bind PF10412.4 386 1.1e-07 21.7 0.1 2 2 0.00039 0.0093 5.4 0.0 234 281 230 282 224 314 0.80 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 Pox_A32 PF04665.7 241 6.4e-06 16.4 0.1 1 1 7.1e-07 1.7e-05 15.1 0.1 10 91 138 222 131 309 0.60 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 RNA_helicase PF00910.17 107 5e-05 14.4 0.3 1 1 1.6e-05 0.00038 11.6 0.0 1 45 143 186 143 239 0.80 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 1_12 - 391 NACHT PF05729.7 166 9.9e-05 12.9 0.0 1 1 9.7e-06 0.00023 11.7 0.0 3 31 143 171 142 227 0.88 # 6690 # 7862 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.380 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/920fe334-1f7a-45fc-a69d-688b2f5fa791 # Target file: checkm_output/bins/pGCA_001889165.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001889165.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/920fe334-1f7a-45fc-a69d-688b2f5fa791 checkm_output/bins/pGCA_001889165.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:47:00 2020 # [ok]