# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_37 - 380 UPF0020 PF01170.13 180 0.00011 13.6 0.2 1 1 1.3e-05 0.00062 11.2 0.2 90 120 130 158 78 196 0.69 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_6 - 220 MipZ PF09140.6 261 2e-13 41.8 0.5 1 2 4.4e-08 2.1e-06 18.8 0.0 3 39 4 40 2 47 0.92 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 MipZ PF09140.6 261 2e-13 41.8 0.5 2 2 5.2e-09 2.5e-07 21.8 0.1 77 187 53 174 40 191 0.77 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_37 - 380 Methyltransf_11 PF08241.7 95 2.9e-06 19.7 0.0 1 1 2.9e-07 1.4e-05 17.5 0.0 1 94 85 190 85 191 0.74 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_6 - 220 SRP54 PF00448.17 196 1.1e-05 16.8 0.0 1 1 4.8e-07 2.3e-05 15.8 0.0 11 93 12 84 3 93 0.80 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 AAA_17 PF13207.1 121 9.4e-05 15.1 0.1 1 1 4.5e-06 0.00021 14.0 0.0 9 77 12 82 10 196 0.63 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 MobB PF03205.9 140 9.5e-05 14.0 0.2 1 2 6.2e-06 0.0003 12.4 0.1 7 39 9 40 3 146 0.81 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 MobB PF03205.9 140 9.5e-05 14.0 0.2 2 2 0.066 3.2 -0.6 0.0 58 87 132 161 123 207 0.73 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 LpxK PF02606.9 326 0.00027 11.8 0.1 1 1 1.3e-05 0.0006 10.6 0.0 45 70 10 35 4 37 0.89 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 ArsA_ATPase PF02374.10 305 3.9e-07 21.2 0.0 1 1 1.1e-08 5.4e-07 20.7 0.0 3 107 4 103 2 129 0.71 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 AAA_26 PF13500.1 199 0.00032 12.2 0.4 1 1 1.5e-05 0.00072 11.0 0.2 2 32 3 33 2 36 0.90 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 VirC1 PF07015.6 231 5.3e-17 53.5 0.1 1 1 1.5e-18 7e-17 53.1 0.1 1 189 1 182 1 219 0.80 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 AAA_18 PF13238.1 129 7.2e-07 21.5 0.8 1 2 5.6e-08 2.7e-06 19.6 0.1 8 78 12 102 10 143 0.76 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 AAA_18 PF13238.1 129 7.2e-07 21.5 0.8 2 2 0.065 3.1 0.0 0.1 57 91 151 178 133 206 0.59 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 CbiA PF01656.18 195 1.4e-17 55.6 1.5 1 2 5.6e-19 2.7e-17 54.6 0.8 1 177 4 159 4 180 0.74 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 CbiA PF01656.18 195 1.4e-17 55.6 1.5 2 2 0.051 2.4 -0.7 0.1 180 180 180 180 141 211 0.40 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_37 - 380 Methyltransf_25 PF13649.1 101 2.6e-05 16.5 0.0 1 1 1.9e-06 9e-05 14.7 0.0 1 74 84 155 84 187 0.79 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 380 N6_Mtase PF02384.11 311 1.7e-17 55.2 0.2 1 1 8.9e-19 4.3e-17 53.9 0.1 18 236 50 244 39 265 0.80 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_6 - 220 AAA_31 PF13614.1 157 6e-09 27.9 0.1 1 2 1.7e-06 8.1e-05 14.5 0.0 7 41 8 42 3 46 0.86 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_6 - 220 AAA_31 PF13614.1 157 6e-09 27.9 0.1 2 2 1.7e-05 0.00081 11.2 0.0 97 152 54 108 49 111 0.92 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_37 - 380 Methyltransf_26 PF13659.1 117 1.4e-21 68.6 0.0 1 1 4.6e-23 2.2e-21 68.0 0.0 1 116 81 194 81 195 0.91 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 380 MTS PF05175.9 170 1.4e-06 19.6 0.0 1 1 7e-08 3.4e-06 18.4 0.0 32 140 81 193 69 205 0.67 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_25 - 188 Mg_chelatase_2 PF13335.1 96 8.7e-05 14.8 0.1 1 1 3.6e-06 0.00017 13.9 0.1 5 68 116 179 112 182 0.91 # 19314 # 19877 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.317 1_37 - 380 Eco57I PF07669.6 106 3.8e-14 44.9 0.1 1 1 2.4e-15 1.2e-13 43.3 0.1 3 105 145 243 140 244 0.85 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 380 Methyltransf_31 PF13847.1 152 1.7e-09 29.3 0.3 1 1 1.1e-10 5.4e-09 27.7 0.0 5 126 82 210 80 253 0.75 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_37 - 380 Methyltransf_23 PF13489.1 161 5.6e-05 14.8 0.0 1 1 4.4e-06 0.00021 12.9 0.0 13 84 74 150 59 219 0.79 # 28973 # 30112 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.296 1_6 - 220 APS_kinase PF01583.15 157 5.1e-06 18.1 0.0 1 1 1.7e-07 8.1e-06 17.4 0.0 2 43 2 43 1 80 0.84 # 3392 # 4051 # 1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1cb0a2e8-6c31-40e6-b173-3de1d61a455d # Target file: checkm_output/bins/pGCA_001880245.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001880245.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1cb0a2e8-6c31-40e6-b173-3de1d61a455d checkm_output/bins/pGCA_001880245.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:55 2020 # [ok]