# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_111 - 184 DUF2122 PF09895.4 106 0.00041 13.7 0.1 1 2 0.00096 0.11 5.9 0.0 65 97 42 74 16 80 0.77 # 58803 # 59354 # -1 # ID=1_111;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.284 1_111 - 184 DUF2122 PF09895.4 106 0.00041 13.7 0.1 2 2 0.001 0.12 5.8 0.0 44 93 129 178 120 182 0.80 # 58803 # 59354 # -1 # ID=1_111;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.284 1_91 - 415 Terminase_6 PF03237.10 384 3.6e-20 65.1 4.8 1 1 4e-22 4.6e-20 64.7 4.8 2 381 27 400 26 402 0.85 # 47089 # 48333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 1_101 - 60 Eno-Rase_FAD_bd PF07055.7 65 0.00041 13.5 0.0 1 1 4.3e-06 0.0005 13.2 0.0 21 50 17 46 10 53 0.87 # 54199 # 54378 # 1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.233 1_57 - 128 SSB PF00436.20 104 4.5e-36 116.1 1.1 1 1 4.9e-38 5.7e-36 115.7 1.1 1 104 1 101 1 101 0.99 # 32746 # 33129 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.294 1_70 - 235 Methyltransf_18 PF12847.2 112 0.00036 14.3 0.0 1 1 6.2e-06 0.00072 13.3 0.0 2 47 180 223 179 230 0.91 # 36859 # 37563 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_8 - 619 AAA_22 PF13401.1 131 7e-05 16.1 1.4 1 1 9.7e-06 0.00057 13.2 0.8 6 123 343 507 341 513 0.72 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_94 - 784 AAA_22 PF13401.1 131 0.00052 13.3 0.1 1 2 0.00038 0.022 8.0 0.0 5 47 395 456 390 519 0.71 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_94 - 784 AAA_22 PF13401.1 131 0.00052 13.3 0.1 2 2 0.056 3.3 1.0 0.0 88 125 667 708 649 714 0.78 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_70 - 235 N6_N4_Mtase PF01555.13 231 4.7e-15 48.8 2.5 1 2 0.014 1.6 1.2 1.5 3 49 29 84 27 114 0.70 # 36859 # 37563 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_70 - 235 N6_N4_Mtase PF01555.13 231 4.7e-15 48.8 2.5 2 2 2.1e-16 2.4e-14 46.5 0.0 156 229 147 217 102 219 0.81 # 36859 # 37563 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_8 - 619 MobB PF03205.9 140 0.0004 13.2 0.1 1 1 9.2e-06 0.0011 11.8 0.1 6 34 347 375 343 386 0.88 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_8 - 619 AAA_16 PF13191.1 185 0.00066 12.8 0.0 1 1 1.7e-05 0.002 11.2 0.0 24 61 341 380 329 476 0.89 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_8 - 619 KaiC PF06745.8 227 1.1e-05 17.7 0.9 1 2 0.045 5.2 -0.8 0.1 98 130 268 302 238 308 0.74 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_8 - 619 KaiC PF06745.8 227 1.1e-05 17.7 0.9 2 2 5.8e-07 6.8e-05 15.2 0.1 3 127 326 472 324 497 0.70 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_94 - 784 AAA_14 PF13173.1 128 0.00023 14.2 9.6 1 2 2.8e-06 0.00033 13.7 0.0 3 39 395 432 393 492 0.74 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_94 - 784 AAA_14 PF13173.1 128 0.00023 14.2 9.6 2 2 0.0014 0.16 5.0 0.2 60 97 658 707 596 729 0.65 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_8 - 619 AAA_29 PF13555.1 62 0.0009 11.9 0.1 1 1 2.7e-05 0.0032 10.2 0.0 26 39 344 357 338 373 0.82 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_70 - 235 Methyltransf_26 PF13659.1 117 4.5e-06 19.9 0.0 1 2 0.00018 0.021 8.0 0.0 58 94 14 50 7 88 0.83 # 36859 # 37563 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_70 - 235 Methyltransf_26 PF13659.1 117 4.5e-06 19.9 0.0 2 2 4.6e-05 0.0054 9.9 0.0 1 45 180 223 180 230 0.93 # 36859 # 37563 # -1 # ID=1_70;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.299 1_8 - 619 DAP3 PF10236.4 309 0.0012 10.8 3.1 1 2 0.023 2.7 -0.1 1.5 227 301 93 183 71 188 0.62 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_8 - 619 DAP3 PF10236.4 309 0.0012 10.8 3.1 2 2 2e-05 0.0023 10.0 0.0 27 52 345 370 341 374 0.91 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_8 - 619 Helicase_RecD PF05127.9 177 0.00059 12.6 0.0 1 1 1.1e-05 0.0013 11.5 0.0 3 32 347 376 345 429 0.87 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_94 - 784 AAA_10 PF12846.2 304 2.6e-09 30.0 0.8 1 2 0.066 7.7 -1.1 0.1 24 127 154 265 146 357 0.61 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_94 - 784 AAA_10 PF12846.2 304 2.6e-09 30.0 0.8 2 2 2.2e-11 2.6e-09 30.0 0.8 5 261 398 711 395 737 0.67 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_8 - 619 Zot PF05707.7 193 0.00043 12.9 0.0 1 1 8.2e-06 0.00096 11.8 0.0 3 54 344 400 342 476 0.75 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 1_94 - 784 TrwB_AAD_bind PF10412.4 386 2.6e-05 16.1 0.2 1 2 0.00045 0.052 5.2 0.0 14 50 393 429 384 438 0.88 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_94 - 784 TrwB_AAD_bind PF10412.4 386 2.6e-05 16.1 0.2 2 2 5e-05 0.0059 8.3 0.1 219 286 645 713 604 722 0.73 # 49111 # 51462 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.271 1_46 - 171 Sigma54_activ_2 PF14532.1 138 0.00087 12.5 0.0 1 1 1.1e-05 0.0013 11.9 0.0 6 40 11 45 8 107 0.89 # 27712 # 28224 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.304 1_91 - 415 Terminase_3 PF04466.8 387 1.1e-106 350.2 8.1 1 1 1.1e-108 1.2e-106 350.1 8.1 2 386 22 401 21 402 0.97 # 47089 # 48333 # -1 # ID=1_91;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.302 1_57 - 128 tRNA_anti-codon PF01336.20 75 5.7e-05 16.1 0.2 1 1 7.4e-07 8.7e-05 15.5 0.2 25 73 43 99 40 101 0.81 # 32746 # 33129 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.294 1_8 - 619 AAA_25 PF13481.1 194 1.7e-12 40.2 0.0 1 1 3.4e-14 3.9e-12 39.1 0.0 15 193 324 513 311 514 0.68 # 2322 # 4178 # -1 # ID=1_8;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.289 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/44af8fd0-cc6c-4ba9-a73d-ae6918240b54 # Target file: checkm_output/bins/pGCA_001879625.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001879625.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/44af8fd0-cc6c-4ba9-a73d-ae6918240b54 checkm_output/bins/pGCA_001879625.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:54 2020 # [ok]