# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_100 - 622 Eno-Rase_NADH_b PF12242.3 78 0.047 6.7 8.5 1 1 2.6e-05 0.003 10.5 2.1 37 71 438 472 423 475 0.88 # 83159 # 85024 # -1 # ID=1_100;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.413 1_25 - 541 cobW PF02492.14 178 0.00053 12.6 0.0 1 1 1.1e-05 0.0013 11.3 0.0 3 23 245 265 244 323 0.85 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 IstB_IS21 PF01695.12 178 8.6e-05 15.1 0.0 1 1 1.2e-06 0.00014 14.5 0.0 23 70 117 162 106 185 0.80 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 400 MipZ PF09140.6 261 2.3e-10 33.1 0.2 1 2 2e-08 2.3e-06 19.9 0.0 2 49 108 157 107 195 0.83 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 MipZ PF09140.6 261 2.3e-10 33.1 0.2 2 2 1.2e-05 0.0013 10.9 0.0 87 134 231 278 215 284 0.86 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 YhjQ PF06564.7 244 1.5e-05 17.5 0.2 1 2 0.00039 0.046 6.1 0.0 3 54 108 162 106 283 0.74 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 YhjQ PF06564.7 244 1.5e-05 17.5 0.2 2 2 5.2e-05 0.0061 9.0 0.1 171 191 377 397 353 399 0.88 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_14 - 316 AAA_2 PF07724.9 171 0.00092 12.3 0.0 1 1 1.4e-05 0.0017 11.4 0.0 4 59 140 196 138 203 0.84 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 DUF87 PF01935.12 229 6.1e-08 25.8 0.0 1 1 4.3e-09 1.7e-07 24.4 0.0 18 59 451 490 436 492 0.82 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_41 - 654 DUF87 PF01935.12 229 1.7e-06 21.1 0.0 1 1 9.2e-08 3.6e-06 20.0 0.0 8 63 178 232 173 323 0.84 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 316 DUF87 PF01935.12 229 0.00045 13.2 0.0 1 1 1.8e-05 0.0007 12.5 0.0 24 58 140 175 120 197 0.88 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 AAA_22 PF13401.1 131 1.6e-07 24.6 0.0 1 2 0.017 0.68 3.2 0.0 69 128 222 283 195 286 0.84 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_12 - 805 AAA_22 PF13401.1 131 1.6e-07 24.6 0.0 2 2 1e-06 3.9e-05 16.9 0.0 5 32 455 482 451 515 0.84 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 AAA_22 PF13401.1 131 3.1e-05 17.3 0.0 1 1 1.1e-05 0.00042 13.6 0.0 3 63 241 291 238 305 0.75 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_22 PF13401.1 131 0.00095 12.5 0.0 1 1 4.1e-05 0.0016 11.7 0.0 4 37 139 184 133 233 0.74 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_62 - 402 DUF1611 PF07755.6 301 2.4e-106 347.8 0.0 1 1 2.4e-108 2.8e-106 347.6 0.0 1 301 78 383 78 383 0.98 # 52131 # 53336 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_12 - 805 AAA_17 PF13207.1 121 3.4e-05 17.8 0.0 1 1 1.1e-05 0.00044 14.2 0.0 3 57 458 536 457 578 0.64 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 AAA_17 PF13207.1 121 0.00011 16.1 0.0 1 1 1.1e-05 0.00042 14.3 0.0 2 22 245 265 245 322 0.83 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_17 PF13207.1 121 0.00017 15.6 0.0 1 1 9.5e-06 0.00037 14.5 0.0 2 32 142 170 141 215 0.78 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 400 ArsA_ATPase PF02374.10 305 3.5e-06 19.3 0.2 1 1 8.4e-08 9.8e-06 17.9 0.2 7 136 113 252 106 255 0.76 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_14 - 316 T2SE PF00437.15 272 5.4e-84 274.4 0.0 1 1 1.7e-85 6.7e-84 274.1 0.0 7 271 19 285 14 286 0.97 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 T2SE PF00437.15 272 4.8e-31 100.7 0.0 1 1 2e-32 7.9e-31 100.0 0.0 76 254 191 374 98 392 0.78 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 805 T2SE PF00437.15 272 8.7e-05 14.6 0.0 1 1 4.3e-06 0.00017 13.7 0.0 121 155 447 481 434 490 0.82 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_14 - 316 Zeta_toxin PF06414.7 201 1.5e-05 17.3 0.0 1 1 2.7e-07 3.2e-05 16.2 0.0 16 81 139 199 124 217 0.68 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 SMC_N PF02463.14 220 0.00082 11.7 0.1 1 1 2.2e-05 0.0025 10.1 0.0 26 44 244 262 232 295 0.88 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_2 - 400 VirC1 PF07015.6 231 1.2e-05 17.6 1.1 1 2 3e-05 0.0035 9.5 0.0 2 47 107 155 106 195 0.79 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 VirC1 PF07015.6 231 1.2e-05 17.6 1.1 2 2 0.00028 0.032 6.4 0.2 81 133 240 292 230 329 0.84 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_12 - 805 Arch_ATPase PF01637.13 234 0.0002 14.2 0.0 1 2 2.2e-05 0.0025 10.6 0.0 23 56 457 490 454 500 0.82 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_12 - 805 Arch_ATPase PF01637.13 234 0.0002 14.2 0.0 2 2 0.082 9.6 -1.1 0.0 186 231 606 649 577 653 0.77 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 AAA_16 PF13191.1 185 1e-05 18.7 0.0 1 1 9.5e-07 3.7e-05 16.9 0.0 21 51 239 269 229 298 0.79 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_16 PF13191.1 185 0.0006 12.9 0.0 1 1 3.6e-05 0.0014 11.7 0.0 23 49 138 164 122 218 0.89 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 AAA_16 PF13191.1 185 0.00072 12.7 0.0 1 1 7.6e-05 0.003 10.7 0.0 26 51 456 481 446 574 0.90 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_12 - 805 AAA_23 PF13476.1 202 6.3e-06 19.7 0.0 1 1 2.8e-07 1.6e-05 18.4 0.0 20 38 455 473 443 476 0.83 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 AAA_23 PF13476.1 202 0.00049 13.6 0.1 1 1 1.8e-05 0.001 12.5 0.1 22 47 245 266 235 441 0.78 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 AAA_18 PF13238.1 129 2.9e-06 20.8 0.0 1 1 1.5e-07 8.9e-06 19.2 0.0 1 42 245 286 245 309 0.84 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_18 PF13238.1 129 7.3e-05 16.2 0.0 1 1 2.2e-06 0.00013 15.4 0.0 1 37 142 174 142 200 0.75 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_2 - 400 CbiA PF01656.18 195 3.8e-24 78.2 0.0 1 1 1.1e-25 6.4e-24 77.5 0.0 1 178 109 331 109 348 0.69 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_62 - 402 CbiA PF01656.18 195 1.9e-05 17.2 1.0 1 2 0.041 2.4 0.6 0.0 104 136 102 134 91 150 0.85 # 52131 # 53336 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_62 - 402 CbiA PF01656.18 195 1.9e-05 17.2 1.0 2 2 1.7e-05 0.00097 11.7 0.6 1 109 199 287 199 309 0.76 # 52131 # 53336 # 1 # ID=1_62;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.396 1_14 - 316 KaiC PF06745.8 227 2.8e-05 16.4 0.0 1 1 4.1e-07 4.8e-05 15.6 0.0 14 42 134 162 109 195 0.76 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 AAA_29 PF13555.1 62 1.8e-06 20.6 0.0 1 1 1.2e-07 4.7e-06 19.3 0.0 20 44 452 474 445 491 0.75 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 AAA_29 PF13555.1 62 2.5e-05 16.9 0.0 1 1 1.4e-06 5.5e-05 15.8 0.0 21 43 241 262 233 264 0.81 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_29 PF13555.1 62 0.00011 14.9 0.0 1 1 5.3e-06 0.00021 14.0 0.0 20 43 138 159 129 170 0.83 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 Sigma54_activat PF00158.21 168 0.00022 13.8 0.0 1 1 3.8e-06 0.00044 12.9 0.0 9 48 126 166 119 192 0.78 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 MMR_HSR1 PF01926.18 116 0.00089 12.4 0.0 1 1 1.8e-05 0.0021 11.2 0.0 2 36 245 278 244 376 0.69 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 805 DUF258 PF03193.11 161 0.00019 13.8 0.0 1 1 3.4e-06 0.0004 12.7 0.0 28 59 446 478 429 511 0.81 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_41 - 654 TraG-D_C PF12696.2 128 1.3e-12 40.9 0.0 1 2 6.8e-14 8e-12 38.3 0.0 2 115 405 518 404 531 0.81 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_41 - 654 TraG-D_C PF12696.2 128 1.3e-12 40.9 0.0 2 2 0.063 7.4 -0.4 0.1 100 126 570 596 553 598 0.75 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_2 - 400 AAA_31 PF13614.1 157 1.8e-08 27.6 0.6 1 3 1.3e-06 0.00015 14.9 0.0 2 102 108 215 107 223 0.79 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 AAA_31 PF13614.1 157 1.8e-08 27.6 0.6 2 3 0.00011 0.012 8.6 0.0 108 135 233 260 225 277 0.79 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_2 - 400 AAA_31 PF13614.1 157 1.8e-08 27.6 0.6 3 3 0.032 3.7 0.6 0.1 32 79 309 353 295 389 0.63 # 766 # 1965 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_14 - 316 AAA_33 PF13671.1 143 0.00032 13.7 0.0 1 1 5.6e-06 0.00066 12.7 0.0 2 67 142 205 142 235 0.64 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 FtsK_SpoIIIE PF01580.13 205 3.9e-09 29.4 0.2 1 2 4e-10 2.3e-08 26.8 0.0 35 92 135 192 117 210 0.78 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 FtsK_SpoIIIE PF01580.13 205 3.9e-09 29.4 0.2 2 2 0.069 4 -0.1 0.1 178 203 260 285 245 287 0.76 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 FtsK_SpoIIIE PF01580.13 205 2.4e-05 17.0 0.0 1 1 7.7e-07 4.5e-05 16.1 0.0 34 77 450 490 435 505 0.74 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_12 - 805 ABC_tran PF00005.22 137 1.6e-06 21.6 0.0 1 1 1.3e-07 7.5e-06 19.4 0.0 4 36 447 479 445 497 0.86 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_25 - 541 ABC_tran PF00005.22 137 0.00017 15.1 0.0 1 1 9.1e-06 0.00053 13.4 0.0 14 50 245 281 235 334 0.81 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 TIGR03263 TIGR03263 180 0.00076 12.0 0.0 1 1 1.3e-05 0.0016 10.9 0.0 4 30 245 271 243 276 0.88 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 AAA_19 PF13245.1 76 0.00046 13.1 0.0 1 1 1.5e-05 0.0018 11.2 0.0 4 32 133 160 130 181 0.69 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 AAA_10 PF12846.2 304 7.8e-31 100.7 0.0 1 1 6.2e-32 1.8e-30 99.5 0.0 2 292 455 717 455 730 0.82 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_41 - 654 AAA_10 PF12846.2 304 1.2e-13 44.2 0.0 1 1 3.7e-13 1.1e-11 37.8 0.0 4 297 196 483 193 487 0.76 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 316 AAA_10 PF12846.2 304 9.9e-05 15.0 0.0 1 1 7.8e-06 0.00023 13.8 0.0 2 36 140 177 139 186 0.77 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 AAA_10 PF12846.2 304 0.001 11.6 0.0 1 1 8.4e-05 0.0025 10.4 0.0 3 22 244 263 242 284 0.85 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_14 - 316 ResIII PF04851.10 184 0.00069 12.6 0.0 1 1 1.1e-05 0.0013 11.7 0.0 15 62 131 181 105 203 0.80 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 DUF2075 PF09848.4 352 5.9e-05 15.2 0.0 1 1 6.8e-07 7.9e-05 14.8 0.0 1 44 139 182 139 212 0.70 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 TIP49 PF06068.8 398 0.0001 14.2 0.0 1 1 1.3e-06 0.00015 13.6 0.0 32 76 125 165 116 179 0.87 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 DEAD PF00270.24 169 6.5e-07 22.1 0.0 1 1 1.2e-08 1.4e-06 21.0 0.0 10 70 135 195 127 218 0.78 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 DUF815 PF05673.8 250 0.00047 12.2 0.4 1 2 2.4e-05 0.0029 9.7 0.0 55 78 244 267 232 275 0.87 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 DUF815 PF05673.8 250 0.00047 12.2 0.4 2 2 0.026 3.1 -0.3 0.1 101 121 470 490 462 494 0.82 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_41 - 654 TrwB_AAD_bind PF10412.4 386 2.9e-11 35.6 0.0 1 2 1.5e-05 0.00058 11.6 0.0 12 54 190 232 184 347 0.83 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_41 - 654 TrwB_AAD_bind PF10412.4 386 2.9e-11 35.6 0.0 2 2 1e-08 4.1e-07 22.0 0.0 245 379 405 543 376 550 0.76 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 316 TrwB_AAD_bind PF10412.4 386 1e-05 17.4 0.0 1 1 4.1e-07 1.6e-05 16.8 0.0 14 50 138 176 128 184 0.83 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_12 - 805 TrwB_AAD_bind PF10412.4 386 7.8e-05 14.5 0.0 1 1 4.6e-06 0.00018 13.3 0.0 15 52 454 492 447 498 0.82 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_14 - 316 Sigma54_activ_2 PF14532.1 138 0.00038 13.7 0.0 1 1 5.6e-06 0.00065 12.9 0.0 5 55 123 172 120 200 0.77 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_41 - 654 T4SS-DNA_transf PF02534.9 469 4e-12 38.5 0.0 1 2 1e-06 0.00012 13.8 0.0 35 84 176 235 128 245 0.79 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_41 - 654 T4SS-DNA_transf PF02534.9 469 4e-12 38.5 0.0 2 2 2.6e-09 3.1e-07 22.4 0.0 253 438 355 543 334 554 0.84 # 33983 # 35944 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 316 Pox_A32 PF04665.7 241 0.0012 11.3 0.0 1 1 1.6e-05 0.0018 10.7 0.0 9 38 135 164 129 198 0.88 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_14 - 316 GTP_EFTU PF00009.22 188 0.00062 12.3 0.1 1 1 8.6e-06 0.001 11.7 0.1 3 34 139 170 137 207 0.83 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_25 - 541 AAA_25 PF13481.1 194 3.1e-06 19.8 0.0 1 2 0.067 2.6 0.5 0.0 80 149 91 158 78 171 0.63 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 AAA_25 PF13481.1 194 3.1e-06 19.8 0.0 2 2 9.5e-07 3.7e-05 16.3 0.0 9 54 218 263 213 279 0.91 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_12 - 805 AAA_25 PF13481.1 194 5.8e-05 15.7 0.2 1 1 1.3e-05 0.00049 12.6 0.0 34 57 455 478 435 494 0.83 # 7891 # 10305 # 1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.522 1_14 - 316 AAA_25 PF13481.1 194 0.00058 12.4 0.1 1 1 3.6e-05 0.0014 11.1 0.1 24 58 130 164 111 303 0.88 # 11071 # 12018 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_81 - 77 eIF-1a PF01176.14 65 0.00024 13.7 0.1 1 1 4.6e-06 0.00054 12.5 0.1 25 52 9 36 4 48 0.91 # 70412 # 70642 # 1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.424 1_25 - 541 AAA_28 PF13521.1 163 0.00033 13.8 0.0 1 2 0.011 1.3 2.0 0.0 26 70 62 105 48 120 0.77 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 AAA_28 PF13521.1 163 0.00033 13.8 0.0 2 2 7.5e-05 0.0088 9.1 0.0 2 22 245 265 244 295 0.80 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 1_25 - 541 RNA12 PF10443.4 431 0.00066 11.3 0.0 1 1 1.1e-05 0.0013 10.4 0.0 19 39 244 262 234 276 0.80 # 20943 # 22565 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.532 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3f9b077a-a2d1-4e33-825c-3676fab5ef7a # Target file: checkm_output/bins/pGCA_001879585.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001879585.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3f9b077a-a2d1-4e33-825c-3676fab5ef7a checkm_output/bins/pGCA_001879585.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:53 2020 # [ok]