# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_15 - 177 Methyltransf_8 PF05148.10 219 1e-05 16.2 0.1 1 1 4.8e-07 1.2e-05 15.9 0.1 70 151 36 126 21 171 0.71 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_15 - 177 Methyltransf_12 PF08242.7 99 6.9e-07 20.7 0.1 1 1 1.7e-07 4.2e-06 18.2 0.1 2 92 44 122 43 129 0.78 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_15 - 177 Methyltransf_18 PF12847.2 112 4.8e-06 18.2 0.1 1 1 2.8e-06 6.9e-05 14.4 0.1 3 35 40 71 39 134 0.65 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_20 - 618 DUF87 PF01935.12 229 3.1e-13 41.0 2.8 1 2 0.0012 0.016 5.9 0.1 75 202 63 158 21 174 0.55 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 DUF87 PF01935.12 229 3.1e-13 41.0 2.8 2 2 3.1e-12 3.9e-11 34.1 0.3 25 81 250 314 244 450 0.83 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_12 - 661 DUF87 PF01935.12 229 3.8e-08 24.3 1.5 1 1 5.9e-09 7.3e-08 23.4 0.3 23 96 208 275 194 412 0.64 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_3 - 417 AAA_22 PF13401.1 131 6e-07 20.6 0.2 1 1 2.6e-07 3.3e-06 18.2 0.0 5 113 55 224 51 244 0.76 # 2860 # 4110 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_12 - 661 AAA_22 PF13401.1 131 2.6e-05 15.3 0.1 1 1 7.6e-06 9.5e-05 13.5 0.1 3 33 207 237 204 378 0.82 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 Methyltransf_11 PF08241.7 95 5.5e-12 37.1 0.0 1 1 3.6e-13 9.1e-12 36.4 0.0 1 94 43 130 43 131 0.88 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_15 - 177 DUF3321 PF11968.3 220 2.7e-06 18.1 0.2 1 1 1.4e-07 3.5e-06 17.7 0.2 54 123 40 114 12 127 0.77 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_12 - 661 T2SE PF00437.15 272 4.7e-05 13.3 0.1 1 1 3.5e-06 8.8e-05 12.4 0.1 127 150 207 230 167 243 0.77 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 Zeta_toxin PF06414.7 201 1.7e-05 14.9 0.0 1 1 1.3e-06 3.2e-05 14.0 0.0 10 46 202 238 194 244 0.78 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_20 - 618 Arch_ATPase PF01637.13 234 2e-05 15.3 0.1 1 3 0.027 0.66 0.5 0.3 49 60 119 136 58 184 0.50 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 Arch_ATPase PF01637.13 234 2e-05 15.3 0.1 2 3 8.1e-07 2e-05 15.3 0.1 15 60 243 288 236 304 0.84 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 Arch_ATPase PF01637.13 234 2e-05 15.3 0.1 3 3 0.018 0.46 1.0 1.0 65 160 410 525 385 548 0.60 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_3 - 417 AAA_16 PF13191.1 185 3.8e-06 17.9 0.0 1 1 3.4e-07 8.6e-06 16.8 0.0 22 161 52 207 40 226 0.72 # 2860 # 4110 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_12 - 661 CbiA PF01656.18 195 1.6e-05 15.3 0.0 1 1 1.3e-06 3.2e-05 14.3 0.0 2 39 211 248 210 361 0.68 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 Methyltransf_25 PF13649.1 101 8.3e-08 23.6 0.0 1 1 1.5e-08 3.7e-07 21.5 0.0 1 94 42 120 42 127 0.79 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_20 - 618 AAA_14 PF13173.1 128 6.1e-06 17.1 4.9 1 2 3.1e-05 0.00039 11.3 0.1 3 56 249 301 247 318 0.76 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 AAA_14 PF13173.1 128 6.1e-06 17.1 4.9 2 2 0.00093 0.012 6.5 0.2 51 106 477 539 439 556 0.66 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_12 - 661 AAA_14 PF13173.1 128 7.1e-06 16.9 6.5 1 3 0.00011 0.0013 9.6 0.0 2 64 208 268 207 284 0.73 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 AAA_14 PF13173.1 128 7.1e-06 16.9 6.5 2 3 0.0014 0.018 5.9 0.3 20 94 317 384 312 392 0.69 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 AAA_14 PF13173.1 128 7.1e-06 16.9 6.5 3 3 0.025 0.32 1.9 0.0 50 73 439 459 402 525 0.75 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 TraG-D_C PF12696.2 128 1.4e-15 48.2 0.5 1 1 1.6e-16 3.9e-15 46.8 0.5 3 96 450 542 448 572 0.79 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 Methyltransf_26 PF13659.1 117 0.0001 13.3 0.0 1 1 6.1e-06 0.00015 12.7 0.0 3 78 41 104 39 140 0.84 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_15 - 177 TehB PF03848.9 192 5.7e-10 29.6 1.7 1 1 4.7e-11 1.2e-09 28.6 1.7 32 121 40 121 29 169 0.69 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_12 - 661 FtsK_SpoIIIE PF01580.13 205 2.3e-09 27.9 0.1 1 1 9.2e-10 1.1e-08 25.7 0.0 34 79 203 245 181 260 0.81 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_20 - 618 FtsK_SpoIIIE PF01580.13 205 1.3e-06 19.0 0.0 1 1 1.7e-07 2.2e-06 18.2 0.0 22 79 226 285 214 296 0.80 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_15 - 177 MTS PF05175.9 170 5.9e-05 13.4 0.1 1 1 1.1e-05 0.00026 11.3 0.1 20 105 25 103 17 141 0.80 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_15 - 177 UPF0146 PF03686.8 127 2.2e-05 15.2 0.1 1 1 1.6e-06 4.1e-05 14.4 0.1 6 60 31 87 27 101 0.77 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_20 - 618 ABC_tran PF00005.22 137 1.1e-06 19.9 0.3 1 2 0.094 1.2 0.4 0.2 56 80 97 136 71 178 0.51 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 ABC_tran PF00005.22 137 1.1e-06 19.9 0.3 2 2 7.9e-07 9.8e-06 16.9 0.0 10 42 247 279 242 377 0.85 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_3 - 417 ABC_tran PF00005.22 137 0.00029 12.1 0.0 1 1 2.3e-05 0.00029 12.1 0.0 14 42 57 82 52 185 0.82 # 2860 # 4110 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 1_12 - 661 DAP3 PF10236.4 309 5.8e-06 16.3 0.4 1 2 1.1e-06 2.9e-05 14.0 0.0 12 60 197 245 187 272 0.84 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 DAP3 PF10236.4 309 5.8e-06 16.3 0.4 2 2 0.067 1.7 -1.6 0.0 136 168 337 364 334 373 0.82 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 AAA_19 PF13245.1 76 0.00013 12.7 0.1 1 1 1e-05 0.00025 11.8 0.1 12 48 210 242 201 254 0.78 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_20 - 618 AAA_10 PF12846.2 304 6.2e-44 141.5 1.8 1 2 0.017 0.21 1.8 0.0 102 161 99 160 1 185 0.68 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_20 - 618 AAA_10 PF12846.2 304 6.2e-44 141.5 1.8 2 2 2.8e-44 3.5e-43 139.0 0.6 1 303 248 574 248 575 0.90 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_12 - 661 AAA_10 PF12846.2 304 1.2e-22 71.6 0.1 1 1 1.6e-23 2e-22 70.9 0.1 2 298 209 524 208 530 0.75 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 ResIII PF04851.10 184 3.6e-06 17.9 0.3 1 1 1.4e-07 3.6e-06 17.9 0.3 22 70 196 256 168 306 0.71 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 Methyltransf_31 PF13847.1 152 6.6e-13 39.5 4.5 1 1 1.1e-13 2.9e-12 37.4 4.5 4 126 39 143 36 172 0.79 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_12 - 661 DEAD PF00270.24 169 0.0001 12.8 0.0 1 1 1.8e-05 0.00046 10.6 0.0 13 70 207 262 196 377 0.80 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 PrmA PF06325.8 295 8.4e-05 12.7 0.1 1 1 4.1e-06 0.0001 12.4 0.1 160 256 37 130 24 165 0.73 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_12 - 661 DUF853 PF05872.7 504 3e-08 23.3 0.0 1 1 1.9e-09 4.8e-08 22.6 0.0 14 62 201 249 188 276 0.85 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 TrwB_AAD_bind PF10412.4 386 1.7e-17 54.0 0.2 1 2 1.3e-09 1.7e-08 24.4 0.1 10 55 203 248 197 252 0.91 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_12 - 661 TrwB_AAD_bind PF10412.4 386 1.7e-17 54.0 0.2 2 2 1.7e-10 2.2e-09 27.3 0.0 217 338 422 541 399 586 0.74 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_20 - 618 TrwB_AAD_bind PF10412.4 386 8.1e-05 12.2 0.0 1 1 2.4e-05 0.00031 10.3 0.0 13 56 246 289 235 294 0.90 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_12 - 661 T4SS-DNA_transf PF02534.9 469 7.7e-11 32.0 2.6 1 1 1.3e-10 3.1e-09 26.7 2.5 39 128 203 296 155 553 0.78 # 14448 # 16430 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.272 1_15 - 177 Methyltransf_23 PF13489.1 161 5.4e-12 36.7 0.0 1 1 2.6e-13 6.5e-12 36.4 0.0 14 105 30 123 19 158 0.81 # 17924 # 18454 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.209 1_20 - 618 RNA_helicase PF00910.17 107 8.7e-06 16.9 0.6 1 1 1.3e-06 3.1e-05 15.1 0.0 1 45 251 290 251 311 0.79 # 20718 # 22571 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.269 1_3 - 417 NACHT PF05729.7 166 3.6e-08 24.2 0.5 1 1 4.3e-08 1.1e-06 19.4 0.5 3 165 57 277 55 278 0.73 # 2860 # 4110 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.268 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/dd519eaf-a11c-407d-977b-230acd333fcc # Target file: checkm_output/bins/pGCA_001877035.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001877035.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/dd519eaf-a11c-407d-977b-230acd333fcc checkm_output/bins/pGCA_001877035.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:51 2020 # [ok]