# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_47 - 270 YhjQ PF06564.7 244 1.7e-07 23.2 0.1 1 1 4.3e-09 3.1e-07 22.4 0.1 10 160 11 165 3 178 0.72 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_70 - 135 SSB PF00436.20 104 1.8e-41 132.7 0.7 1 1 2.9e-43 2.1e-41 132.5 0.7 1 100 5 108 5 112 0.96 # 46748 # 47152 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.588 1_51 - 346 AAA_2 PF07724.9 171 0.00011 14.6 0.0 1 1 2.5e-06 0.00018 13.9 0.0 3 60 154 210 152 218 0.87 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 AAA_22 PF13401.1 131 5.7e-06 19.0 0.0 1 1 1.6e-07 1.2e-05 18.0 0.0 7 49 157 211 151 254 0.63 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 ATP_bind_1 PF03029.12 238 0.00018 13.5 0.3 1 1 5.3e-05 0.0038 9.2 0.2 6 99 13 131 10 147 0.55 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_47 - 270 SRP54 PF00448.17 196 4.1e-06 18.8 0.2 1 2 5e-07 3.6e-05 15.7 0.2 10 39 12 42 3 46 0.88 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_47 - 270 SRP54 PF00448.17 196 4.1e-06 18.8 0.2 2 2 0.026 1.8 0.3 0.0 82 91 121 130 94 139 0.77 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 AAA_17 PF13207.1 121 0.00018 14.8 0.0 1 1 4.5e-06 0.00032 14.0 0.0 5 24 160 179 157 258 0.77 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 AAA_21 PF13304.1 303 0.00018 13.9 0.0 1 2 0.0086 0.62 2.3 0.0 169 220 25 82 12 133 0.81 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 AAA_21 PF13304.1 303 0.00018 13.9 0.0 2 2 5.5e-05 0.004 9.5 0.0 8 25 163 181 161 219 0.75 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 ArsA_ATPase PF02374.10 305 4.6e-10 31.4 0.0 1 1 9e-12 6.5e-10 30.9 0.0 5 135 7 131 3 177 0.76 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 T2SE PF00437.15 272 1.7e-54 176.9 0.0 1 1 2.8e-56 2e-54 176.7 0.0 6 267 32 302 27 307 0.90 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 Zeta_toxin PF06414.7 201 1.2e-05 16.9 0.0 1 1 2.7e-07 2e-05 16.2 0.0 13 66 150 208 141 243 0.71 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 VirC1 PF07015.6 231 8.7e-07 20.6 0.0 1 2 1.5e-06 0.00011 13.8 0.0 8 46 9 48 3 71 0.78 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_47 - 270 VirC1 PF07015.6 231 8.7e-07 20.6 0.0 2 2 0.00081 0.058 4.8 0.0 80 120 119 154 91 193 0.66 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 AAA_16 PF13191.1 185 5.6e-06 18.9 0.1 1 1 1.9e-07 1.4e-05 17.6 0.1 26 51 156 181 143 207 0.84 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 AAA_23 PF13476.1 202 0.00011 15.0 0.0 1 1 2.5e-06 0.00018 14.3 0.0 22 39 157 174 128 178 0.76 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_7 - 357 AAA_13 PF13166.1 712 0.0043 7.9 21.1 1 1 0.00012 0.0083 6.9 21.1 280 473 97 295 81 325 0.66 # 5484 # 6554 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.647 1_47 - 270 CbiA PF01656.18 195 4.7e-26 83.8 0.0 1 1 8.2e-28 5.9e-26 83.5 0.0 3 161 7 192 5 234 0.73 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 AAA_29 PF13555.1 62 2.5e-06 19.4 0.0 1 1 6.8e-08 4.9e-06 18.5 0.0 24 52 155 183 144 189 0.83 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_48 - 703 TraG-D_C PF12696.2 128 2.4e-08 26.4 0.3 1 1 6.2e-10 4.5e-08 25.5 0.3 4 124 408 530 405 534 0.62 # 28060 # 30168 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.532 1_47 - 270 AAA_31 PF13614.1 157 1.6e-11 36.8 0.1 1 1 3.8e-13 2.7e-11 36.1 0.1 2 151 4 155 3 161 0.84 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 AAA_33 PF13671.1 143 0.00025 13.4 0.0 1 1 5.4e-06 0.00039 12.8 0.0 3 89 158 248 157 256 0.69 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 AAA_30 PF13604.1 196 0.00085 11.4 0.0 1 1 1.9e-05 0.0014 10.7 0.0 17 45 153 181 140 192 0.81 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_51 - 346 FtsK_SpoIIIE PF01580.13 205 0.00056 11.8 0.0 1 1 1.4e-05 0.00099 11.0 0.0 34 57 150 173 132 176 0.79 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_9 - 64 UPF0146 PF03686.8 127 0.00053 12.3 0.0 1 1 8.6e-06 0.00062 12.1 0.0 54 80 23 49 12 55 0.83 # 6934 # 7125 # 1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.599 1_51 - 346 ABC_tran PF00005.22 137 8.9e-06 18.5 0.0 1 1 2.5e-07 1.8e-05 17.5 0.0 17 47 160 190 150 268 0.73 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 AAA_19 PF13245.1 76 0.00049 12.3 0.1 1 2 0.0015 0.1 4.9 0.1 20 49 13 39 9 47 0.68 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_47 - 270 AAA_19 PF13245.1 76 0.00049 12.3 0.1 2 2 0.0016 0.11 4.8 0.0 13 33 126 145 119 166 0.82 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 851 AAA_10 PF12846.2 304 2.4e-29 95.1 0.1 1 1 1.7e-30 6e-29 93.8 0.0 4 294 481 763 478 776 0.81 # 36521 # 39073 # 1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.582 1_51 - 346 AAA_10 PF12846.2 304 0.00075 11.4 0.0 1 1 3.8e-05 0.0014 10.5 0.0 3 21 156 174 154 191 0.82 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_7 - 357 DUF3584 PF12128.3 1201 0.00094 8.9 41.7 1 1 3.2e-05 0.0012 8.6 41.7 247 530 49 328 35 339 0.73 # 5484 # 6554 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.647 1_64 - 468 DUF3584 PF12128.3 1201 0.001 8.8 10.6 1 1 3.7e-05 0.0013 8.4 10.6 348 538 61 254 51 264 0.87 # 43323 # 44726 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_51 - 346 UPF0079 PF02367.12 123 0.00016 13.8 0.0 1 1 3.9e-06 0.00028 13.0 0.0 4 45 143 184 140 189 0.84 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 AAA_24 PF13479.1 213 0.00018 13.5 0.0 1 1 9.7e-06 0.00035 12.6 0.0 11 76 11 130 3 150 0.80 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_51 - 346 AAA_24 PF13479.1 213 0.00024 13.1 0.0 1 1 1.2e-05 0.00043 12.3 0.0 2 35 153 191 152 214 0.88 # 32725 # 33762 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGAG/GGAGG;rbs_spacer=11-12bp;gc_cont=0.561 1_47 - 270 AAA_25 PF13481.1 194 0.00012 14.0 0.0 1 1 6.7e-06 0.00048 12.0 0.0 41 117 11 88 6 132 0.62 # 27248 # 28057 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_43 - 606 Methyltransf_4 PF02390.12 197 0.00026 12.5 0.0 1 2 0.0076 0.55 1.6 0.0 119 150 67 98 61 140 0.76 # 23353 # 25170 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_43 - 606 Methyltransf_4 PF02390.12 197 0.00026 12.5 0.0 2 2 7.3e-05 0.0053 8.2 0.0 118 196 265 353 260 354 0.65 # 23353 # 25170 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7c97ebc7-da1b-4bd4-8505-80daed3fba7c # Target file: checkm_output/bins/pGCA_001870265.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001870265.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7c97ebc7-da1b-4bd4-8505-80daed3fba7c checkm_output/bins/pGCA_001870265.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:52 2020 # [ok]