# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_31 - 423 Terminase_6 PF03237.10 384 1.3e-33 108.5 0.7 1 1 2.6e-35 1.6e-33 108.2 0.7 3 383 25 415 23 416 0.87 # 22185 # 23453 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 1_2 - 259 MipZ PF09140.6 261 1.4e-08 26.3 0.0 1 1 9.7e-09 5.9e-07 21.0 0.0 2 114 5 139 4 158 0.61 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_3 - 60 RRM_5 PF13893.1 56 0.00049 12.2 0.0 1 1 1.1e-05 0.00068 11.7 0.0 27 55 29 57 28 58 0.87 # 1382 # 1561 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.450 1_49 - 150 SSB PF00436.20 104 7.7e-41 130.5 0.3 1 1 1.5e-42 9.3e-41 130.2 0.3 1 104 2 103 2 103 0.98 # 30294 # 30743 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.464 1_2 - 259 ArsA_ATPase PF02374.10 305 2.6e-07 22.1 0.1 1 1 1.4e-08 8.5e-07 20.4 0.1 2 136 4 130 3 145 0.80 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_2 - 259 Fer4_NifH PF00142.13 273 7.2e-07 20.8 0.1 1 2 1.5e-06 9e-05 13.9 0.1 7 71 11 71 3 83 0.70 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_2 - 259 Fer4_NifH PF00142.13 273 7.2e-07 20.8 0.1 2 2 0.00069 0.042 5.2 0.0 143 203 148 208 106 254 0.72 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_2 - 259 CbiA PF01656.18 195 3.6e-23 74.2 0.0 1 1 7.6e-25 4.6e-23 73.8 0.0 5 173 10 206 6 225 0.70 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_16 - 130 Ribosomal_S20p PF01649.13 84 8.2e-05 15.2 0.1 1 1 3.4e-06 0.00021 13.9 0.0 21 68 40 87 35 99 0.91 # 14062 # 14451 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.403 1_2 - 259 AAA_31 PF13614.1 157 1.4e-10 33.5 0.0 1 1 4.4e-12 2.7e-10 32.6 0.0 2 133 5 136 4 144 0.79 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_2 - 259 ParA PF10609.4 81 6.2e-05 15.1 0.0 1 1 1.9e-06 0.00011 14.3 0.0 2 49 122 171 121 178 0.68 # 421 # 1197 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.409 1_31 - 423 Terminase_3 PF04466.8 387 2.9e-09 28.6 0.8 1 1 6.2e-11 3.8e-09 28.2 0.8 80 385 102 413 92 415 0.76 # 22185 # 23453 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.456 1_49 - 150 tRNA_anti-codon PF01336.20 75 3.2e-07 22.4 0.1 1 1 7.1e-09 4.3e-07 22.0 0.1 27 72 47 100 5 103 0.83 # 30294 # 30743 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.464 1_54 - 221 BOF PF04076.8 103 0.00036 12.6 0.0 1 1 1e-05 0.00063 11.8 0.0 19 63 29 74 17 86 0.82 # 32057 # 32719 # -1 # ID=1_54;partial=00;start_type=GTG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.395 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/d4f485ca-b408-43a1-977e-f9de983b03f3 # Target file: checkm_output/bins/pGCA_001857985.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001857985.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/d4f485ca-b408-43a1-977e-f9de983b03f3 checkm_output/bins/pGCA_001857985.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:44 2020 # [ok]