# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 217 MipZ PF09140.6 261 2.2e-11 34.6 0.1 1 1 1.5e-11 5.1e-10 30.2 0.1 2 109 3 111 2 123 0.72 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_27 - 217 YhjQ PF06564.7 244 7.1e-08 23.4 1.0 1 2 1.6e-06 5.3e-05 14.0 0.2 1 45 1 46 1 61 0.81 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_27 - 217 YhjQ PF06564.7 244 7.1e-08 23.4 1.0 2 2 8.9e-05 0.003 8.2 0.1 98 234 60 199 43 209 0.75 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_16 - 511 DUF87 PF01935.12 229 1e-05 16.8 0.0 1 1 5.1e-07 1.7e-05 16.1 0.0 23 68 124 168 113 196 0.88 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 AAA_22 PF13401.1 131 0.00013 13.6 0.1 1 1 2.8e-05 0.00095 10.7 0.0 3 27 123 147 120 168 0.86 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_27 - 217 AAA_17 PF13207.1 121 0.00023 13.4 0.0 1 1 9.1e-06 0.00031 13.0 0.0 9 66 12 76 11 192 0.72 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_16 - 511 MobB PF03205.9 140 7e-05 14.0 0.0 1 1 1e-05 0.00018 12.6 0.0 3 33 127 157 125 163 0.90 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_27 - 217 MobB PF03205.9 140 0.00019 12.5 0.0 1 1 1.9e-05 0.00033 11.8 0.0 10 44 12 45 2 85 0.86 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_27 - 217 ArsA_ATPase PF02374.10 305 4.3e-08 23.8 0.1 1 1 4.8e-09 8.1e-08 22.9 0.0 4 56 5 58 1 74 0.82 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_18 - 235 ArsA_ATPase PF02374.10 305 0.00015 12.2 0.0 1 1 1.2e-05 0.00021 11.8 0.0 4 38 14 49 11 105 0.90 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_16 - 511 T2SE PF00437.15 272 2.8e-06 17.7 0.3 1 1 1.5e-07 5.2e-06 16.9 0.1 128 161 124 157 86 161 0.87 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_27 - 217 Methyltransf_24 PF13578.1 106 8e-06 18.1 0.1 1 1 8.4e-07 2.8e-05 16.3 0.0 7 93 13 102 11 106 0.78 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_27 - 217 VirC1 PF07015.6 231 7.7e-11 32.8 0.1 1 1 5.8e-12 9.9e-11 32.5 0.1 1 157 1 147 1 199 0.75 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_18 - 235 VirC1 PF07015.6 231 0.00022 11.7 0.0 1 1 1.9e-05 0.00032 11.2 0.0 9 51 19 60 12 118 0.79 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_18 - 235 AAA_16 PF13191.1 185 1.1e-05 16.9 0.0 1 1 9.9e-07 1.7e-05 16.2 0.0 33 103 21 91 5 226 0.75 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_16 - 511 AAA_16 PF13191.1 185 0.00024 12.5 0.1 1 1 4.5e-05 0.00076 10.9 0.0 20 56 120 157 103 168 0.85 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_27 - 217 CbiA PF01656.18 195 3.7e-23 73.3 0.1 1 1 2.9e-24 4.9e-23 72.9 0.1 2 164 5 143 4 172 0.78 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_18 - 235 CbiA PF01656.18 195 1.4e-07 22.4 0.1 1 2 4.1e-08 7e-07 20.2 0.0 3 44 16 55 14 106 0.77 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_18 - 235 CbiA PF01656.18 195 1.4e-07 22.4 0.1 2 2 0.054 0.92 0.2 0.0 120 172 89 143 65 163 0.62 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_16 - 511 TraG-D_C PF12696.2 128 6e-29 91.9 1.1 1 1 2.5e-30 8.6e-29 91.4 0.2 3 126 352 472 350 474 0.89 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_27 - 217 AAA_31 PF13614.1 157 1e-10 33.2 0.0 1 2 8.9e-08 1.5e-06 19.6 0.0 1 43 2 45 2 53 0.89 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_27 - 217 AAA_31 PF13614.1 157 1e-10 33.2 0.0 2 2 2.4e-05 0.0004 11.7 0.0 111 153 71 113 52 117 0.89 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 1_18 - 235 AAA_31 PF13614.1 157 1.8e-06 19.3 0.0 1 1 7.8e-07 1.3e-05 16.5 0.0 1 48 12 59 12 143 0.90 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_16 - 511 FtsK_SpoIIIE PF01580.13 205 0.00013 12.8 0.0 1 1 8.2e-06 0.00028 11.8 0.0 39 62 123 148 99 165 0.79 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 1 13 0.028 0.48 1.7 0.0 22 44 261 283 258 294 0.75 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 2 13 0.0081 0.14 3.4 0.0 22 52 295 327 292 336 0.78 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 3 13 0.026 0.44 1.8 0.0 22 50 329 359 324 370 0.73 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 4 13 0.0076 0.13 3.5 0.0 22 52 363 395 357 404 0.79 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 5 13 0.029 0.5 1.6 0.0 22 50 397 427 396 438 0.71 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 6 13 0.026 0.44 1.8 0.0 22 50 431 461 426 472 0.73 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 7 13 0.014 0.24 2.7 0.0 22 52 465 497 462 506 0.77 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 8 13 0.018 0.3 2.3 0.0 22 51 499 530 498 540 0.72 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 9 13 0.016 0.27 2.5 0.0 22 58 533 569 529 574 0.73 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 10 13 0.014 0.24 2.7 0.0 22 51 567 598 562 608 0.74 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 11 13 0.018 0.3 2.3 0.0 22 51 601 632 600 642 0.72 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 12 13 0.016 0.27 2.5 0.0 22 58 635 671 631 676 0.73 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 1_5 - 981 RBD PF02196.10 71 3.1e-11 34.3 9.4 13 13 0.067 1.1 0.5 0.0 22 41 669 688 664 701 0.84 # 3673 # 6615 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.663 2_1 - 87 RBD PF02196.10 71 1.6e-05 16.1 0.1 1 2 0.00015 0.0026 9.0 0.0 22 52 18 50 14 59 0.78 # 2 # 262 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.682 2_1 - 87 RBD PF02196.10 71 1.6e-05 16.1 0.1 2 2 0.0008 0.014 6.7 0.0 22 50 52 82 49 86 0.75 # 2 # 262 # 1 # ID=2_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.682 1_22 - 273 TOBE PF03459.12 64 0.00021 12.8 0.2 1 1 1.8e-05 0.00062 11.3 0.1 7 54 210 253 207 257 0.91 # 20061 # 20879 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.624 1_16 - 511 AAA_10 PF12846.2 304 6.5e-17 53.2 0.1 1 1 1.9e-16 6.5e-15 46.6 0.1 2 300 125 429 124 432 0.69 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 ResIII PF04851.10 184 0.00039 11.7 0.1 1 1 2.2e-05 0.00074 10.7 0.1 5 51 104 149 101 160 0.75 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 DUF815 PF05673.8 250 0.00017 11.9 0.0 1 1 8.7e-06 0.00029 11.1 0.0 50 83 121 154 109 159 0.89 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 DUF853 PF05872.7 504 3.3e-05 13.7 0.1 1 1 1.6e-06 5.4e-05 13.0 0.1 13 59 116 162 108 176 0.85 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 TrwB_AAD_bind PF10412.4 386 2.1e-141 462.3 0.0 1 1 7.1e-143 2.4e-141 462.1 0.0 2 385 111 491 110 492 0.98 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 T4SS-DNA_transf PF02534.9 469 1.4e-23 74.5 0.0 1 2 0.00015 0.0051 6.7 0.0 44 167 121 235 84 261 0.70 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 T4SS-DNA_transf PF02534.9 469 1.4e-23 74.5 0.0 2 2 1.8e-22 6.3e-21 65.8 0.0 264 413 313 461 295 475 0.75 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_16 - 511 PIF1 PF05970.9 364 4.5e-05 13.8 0.1 1 1 2.1e-06 7e-05 13.2 0.1 19 54 121 156 106 168 0.86 # 14001 # 15533 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_18 - 235 RNA_helicase PF00910.17 107 4.7e-05 15.0 0.0 1 2 1.3e-05 0.00046 11.8 0.0 2 49 14 61 13 72 0.79 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_18 - 235 RNA_helicase PF00910.17 107 4.7e-05 15.0 0.0 2 2 0.058 2 0.1 0.0 9 26 179 196 176 210 0.78 # 16151 # 16855 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.546 1_27 - 217 AAA_25 PF13481.1 194 8.6e-05 13.4 0.3 1 1 8.3e-06 0.00028 11.7 0.3 42 92 11 47 3 102 0.58 # 22758 # 23408 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.602 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b0f9c065-2d2e-4ffa-8b7a-cc4a5f14eee9 # Target file: checkm_output/bins/pGCA_001854145.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001854145.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b0f9c065-2d2e-4ffa-8b7a-cc4a5f14eee9 checkm_output/bins/pGCA_001854145.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:43 2020 # [ok]