# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 745 ABC_ATPase PF09818.4 448 1.6e-05 13.2 0.0 1 1 2.7e-06 2.7e-05 12.5 0.0 301 351 602 653 589 698 0.89 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_22 PF13401.1 131 1.1e-07 21.8 0.9 1 1 1.3e-07 1.3e-06 18.2 0.9 7 108 516 670 513 685 0.64 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_17 PF13207.1 121 4.9e-09 26.8 0.0 1 1 1.6e-09 1.6e-08 25.1 0.0 2 43 516 558 516 640 0.72 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_21 PF13304.1 303 2.8e-09 26.9 10.4 1 3 0.091 0.91 -1.0 0.6 131 177 136 191 103 243 0.50 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_21 PF13304.1 303 2.8e-09 26.9 10.4 2 3 2.2e-05 0.00022 10.9 0.5 3 31 517 555 516 599 0.56 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_21 PF13304.1 303 2.8e-09 26.9 10.4 3 3 1.5e-08 1.5e-07 21.2 0.1 230 297 618 682 609 687 0.91 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 MobB PF03205.9 140 2.8e-05 13.5 0.0 1 1 6.9e-06 6.9e-05 12.3 0.0 3 23 516 536 514 543 0.91 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 SMC_N PF02463.14 220 5.6e-09 25.1 0.0 1 2 0.012 0.12 1.2 0.1 26 41 515 530 497 541 0.79 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 SMC_N PF02463.14 220 5.6e-09 25.1 0.0 2 2 1.3e-08 1.3e-07 20.7 0.0 135 212 623 697 535 703 0.79 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_16 PF13191.1 185 6.9e-07 19.0 0.0 1 1 1.4e-07 1.4e-06 18.1 0.0 20 184 509 677 498 678 0.68 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_18 PF13238.1 129 8.8e-07 19.0 0.0 1 1 3.1e-07 3.1e-06 17.2 0.0 1 35 516 545 516 572 0.64 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_29 PF13555.1 62 1.1e-05 14.6 0.1 1 1 2.9e-06 2.9e-05 13.3 0.1 16 39 507 529 501 533 0.85 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA PF00004.24 132 4.7e-07 19.8 0.0 1 1 4e-07 4e-06 16.7 0.0 2 118 517 690 516 697 0.75 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 DUF258 PF03193.11 161 1.1e-05 14.4 0.0 1 1 2e-06 2e-05 13.5 0.0 22 67 499 545 481 557 0.84 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 NTPase_1 PF03266.10 168 4e-06 16.3 0.1 1 3 0.00024 0.0024 7.2 0.0 26 82 47 100 36 118 0.73 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 NTPase_1 PF03266.10 168 4e-06 16.3 0.1 2 3 0.0043 0.043 3.2 0.0 3 21 517 535 515 544 0.81 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 NTPase_1 PF03266.10 168 4e-06 16.3 0.1 3 3 0.013 0.13 1.6 0.1 86 144 633 693 619 708 0.71 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_33 PF13671.1 143 8.4e-05 12.1 0.0 1 1 1.7e-05 0.00017 11.1 0.0 2 30 516 541 516 644 0.72 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 ABC_tran PF00005.22 137 7.3e-38 119.7 0.0 1 1 1.7e-38 1.7e-37 118.5 0.0 1 137 503 653 503 653 0.95 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_10 PF12846.2 304 1.7e-08 23.8 0.0 1 2 1.7e-05 0.00017 10.7 0.0 4 29 516 542 514 566 0.80 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 AAA_10 PF12846.2 304 1.7e-08 23.8 0.0 2 2 1.5e-05 0.00015 10.8 0.0 214 268 634 689 581 704 0.84 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 1_6 - 745 SbcCD_C PF13558.1 90 6.2e-06 15.8 0.3 1 1 5.9e-06 5.9e-05 12.7 0.3 26 89 618 668 612 669 0.72 # 5944 # 8178 # -1 # ID=1_6;partial=00;start_type=GTG;rbs_motif=TATAA;rbs_spacer=4bp;gc_cont=0.290 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b7734703-fbe1-4df4-b4ea-a0af2bcde19a # Target file: checkm_output/bins/pGCA_001831375.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001831375.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b7734703-fbe1-4df4-b4ea-a0af2bcde19a checkm_output/bins/pGCA_001831375.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:42 2020 # [ok]