# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 339 MipZ PF09140.6 261 4.8e-11 34.4 0.3 1 2 1.1e-05 0.00068 11.0 0.1 7 39 73 105 67 112 0.88 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 MipZ PF09140.6 261 4.8e-11 34.4 0.3 2 2 6.8e-09 4.2e-07 21.5 0.0 84 130 167 214 134 252 0.78 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 YhjQ PF06564.7 244 1.7e-12 39.4 0.0 1 1 4e-14 2.5e-12 38.9 0.0 3 153 68 217 66 240 0.87 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_41 - 341 3HCDH_N PF02737.13 180 0.00018 13.4 0.1 1 1 6.6e-06 0.00041 12.3 0.0 2 75 24 95 23 116 0.81 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_18 - 983 UvrD_C_2 PF13538.1 104 6.6e-08 24.9 0.0 1 1 3.1e-09 1.9e-07 23.4 0.0 2 104 790 894 789 894 0.78 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_30 - 876 DUF87 PF01935.12 229 7.3e-05 14.9 0.0 1 1 3.1e-06 0.00019 13.5 0.0 29 95 500 556 498 694 0.55 # 36808 # 39435 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.430 1_18 - 983 AAA_22 PF13401.1 131 6e-05 15.5 0.7 1 1 5.1e-05 0.0011 11.4 0.0 56 125 502 572 460 578 0.79 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_50 - 339 AAA_22 PF13401.1 131 6.6e-05 15.3 0.1 1 2 0.00014 0.0029 10.0 0.0 13 53 76 111 64 140 0.87 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 AAA_22 PF13401.1 131 6.6e-05 15.3 0.1 2 2 0.039 0.8 2.1 0.0 37 60 181 208 164 322 0.66 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_19 - 612 AAA_22 PF13401.1 131 0.00023 13.5 0.1 1 1 3.6e-05 0.00074 11.9 0.0 5 31 183 209 179 317 0.89 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_50 - 339 ATP_bind_1 PF03029.12 238 0.0012 10.6 3.7 1 2 0.033 2 0.0 0.0 60 89 9 38 2 43 0.83 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 ATP_bind_1 PF03029.12 238 0.0012 10.6 3.7 2 2 3e-05 0.0018 10.0 0.4 6 99 77 190 75 200 0.69 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 SRP54 PF00448.17 196 3.3e-05 15.6 0.1 1 2 1e-05 0.00065 11.4 0.1 11 38 77 104 69 107 0.93 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 SRP54 PF00448.17 196 3.3e-05 15.6 0.1 2 2 0.0089 0.55 1.8 0.0 68 94 166 195 144 246 0.78 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_19 - 612 MobB PF03205.9 140 0.00012 14.0 0.1 1 1 7.8e-06 0.00024 13.0 0.1 3 34 185 216 183 220 0.91 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_50 - 339 MobB PF03205.9 140 0.0002 13.4 0.0 1 1 1.4e-05 0.00042 12.3 0.0 8 52 75 118 68 186 0.75 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 ArsA_ATPase PF02374.10 305 1.8e-08 25.9 0.4 1 2 3.3e-08 2e-06 19.2 0.0 9 59 75 125 68 135 0.90 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 ArsA_ATPase PF02374.10 305 1.8e-08 25.9 0.4 2 2 0.0021 0.13 3.4 0.0 123 137 178 192 166 206 0.80 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 T2SE PF00437.15 272 0.00038 11.6 0.0 1 1 1.2e-05 0.00074 10.6 0.0 98 166 36 105 24 135 0.73 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_55 - 126 G-alpha PF00503.15 389 1.3e-06 19.5 0.7 1 1 2.3e-08 1.4e-06 19.4 0.7 132 205 28 98 11 116 0.87 # 59557 # 59934 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=11bp;gc_cont=0.235 1_41 - 341 Shikimate_DH PF01488.15 135 1.1e-05 17.8 0.0 1 1 3.8e-07 2.4e-05 16.7 0.0 9 59 18 70 12 131 0.78 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_50 - 339 VirC1 PF07015.6 231 3.1e-05 15.4 0.4 1 2 2.2e-06 0.00014 13.2 0.1 5 45 70 110 67 119 0.88 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 VirC1 PF07015.6 231 3.1e-05 15.4 0.4 2 2 0.033 2 -0.4 0.0 92 133 128 169 115 182 0.76 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_50 - 339 Fer4_NifH PF00142.13 273 8.8e-07 20.5 0.1 1 1 2.6e-08 1.6e-06 19.6 0.1 3 64 69 132 67 144 0.79 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_19 - 612 Arch_ATPase PF01637.13 234 0.0002 13.3 0.0 1 1 8.1e-06 0.0005 12.0 0.0 22 61 184 222 177 310 0.74 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_19 - 612 AAA_16 PF13191.1 185 8.4e-06 18.1 0.0 1 1 6.3e-07 3.9e-05 15.9 0.0 21 56 179 214 173 243 0.82 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 adh_short PF00106.20 167 3.1e-05 16.2 0.0 1 1 1.5e-06 9.5e-05 14.6 0.0 8 66 28 77 23 93 0.74 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_50 - 339 CbiA PF01656.18 195 8.8e-32 102.3 0.4 1 1 4.1e-33 1.3e-31 101.8 0.4 1 191 69 281 69 285 0.77 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_19 - 612 CbiA PF01656.18 195 0.00049 11.7 0.0 1 1 3.1e-05 0.00096 10.8 0.0 9 37 192 220 186 312 0.78 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 KR PF08659.5 181 0.00047 12.1 0.1 1 1 1.6e-05 0.001 11.0 0.0 8 35 28 55 22 109 0.75 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_42 - 84 ThiS PF02597.15 77 3.6e-08 26.1 0.0 1 1 6.5e-10 4e-08 25.9 0.0 9 77 8 83 4 83 0.88 # 47558 # 47809 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.298 1_36 - 249 tRNA-synt_1b PF00579.20 292 0.00017 13.0 0.0 1 1 4.4e-06 0.00027 12.3 0.0 203 244 41 82 34 112 0.86 # 43053 # 43799 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=10bp;gc_cont=0.431 1_19 - 612 TraG-D_C PF12696.2 128 1.2e-20 66.0 0.0 1 1 3.7e-22 2.3e-20 65.0 0.0 1 126 414 536 414 538 0.85 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_50 - 339 AAA_31 PF13614.1 157 2.3e-09 29.6 0.0 1 1 2.6e-10 1.6e-08 26.9 0.0 8 155 74 218 67 219 0.72 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_41 - 341 2-Hacid_dh_C PF02826.14 178 2.4e-05 15.8 0.1 1 1 6.6e-07 4.1e-05 15.0 0.1 30 70 15 56 3 74 0.83 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_18 - 983 AAA_30 PF13604.1 196 8.7e-47 151.4 4.7 1 1 6.7e-48 2.1e-46 150.2 4.7 3 186 449 628 447 637 0.95 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_19 - 612 AAA_30 PF13604.1 196 0.00018 13.4 0.0 1 1 9.9e-06 0.00031 12.6 0.0 16 51 180 215 176 218 0.89 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 ApbA PF02558.11 151 2.4e-05 16.1 0.0 1 1 6.5e-07 4e-05 15.3 0.0 1 61 24 86 24 133 0.71 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_19 - 612 FtsK_SpoIIIE PF01580.13 205 0.00016 13.4 0.0 1 1 5.4e-06 0.00033 12.4 0.0 39 62 180 206 148 216 0.78 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 UDPG_MGDP_dh_N PF03721.9 185 8.3e-06 17.5 0.1 1 1 2.1e-07 1.3e-05 16.9 0.1 2 59 23 80 22 97 0.83 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_50 - 339 AAA_19 PF13245.1 76 6.9e-05 14.9 0.0 1 1 6.2e-06 0.00038 12.5 0.1 20 48 77 101 73 108 0.77 # 54930 # 55946 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AAAA;rbs_spacer=11bp;gc_cont=0.316 1_18 - 983 Helicase_RecD PF05127.9 177 4.4e-05 15.4 0.3 1 2 0.00059 0.037 5.9 0.1 58 117 503 562 448 566 0.72 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_18 - 983 Helicase_RecD PF05127.9 177 4.4e-05 15.4 0.3 2 2 0.00038 0.024 6.5 0.0 23 80 651 708 638 790 0.67 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_30 - 876 AAA_10 PF12846.2 304 1.7e-48 157.7 0.2 1 1 9.5e-50 2.9e-48 157.0 0.2 2 291 495 782 494 787 0.83 # 36808 # 39435 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.430 1_19 - 612 AAA_10 PF12846.2 304 4.1e-17 54.7 0.0 1 1 4.8e-18 1.5e-16 52.9 0.0 3 300 184 494 183 497 0.75 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 DAO PF01266.19 358 0.0007 10.7 0.1 1 1 1.8e-05 0.0011 10.1 0.1 2 32 24 55 23 70 0.93 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_41 - 341 ThiF PF00899.16 136 2.3e-44 142.7 1.0 1 1 3.8e-46 2.3e-44 142.7 1.0 2 126 21 145 20 153 0.97 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_19 - 612 DUF815 PF05673.8 250 0.00018 12.7 0.0 1 1 5.5e-06 0.00034 11.8 0.0 50 86 179 215 147 225 0.87 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_19 - 612 TrwB_AAD_bind PF10412.4 386 2.9e-156 512.1 0.0 1 1 6.2e-158 3.9e-156 511.7 0.0 2 386 169 557 168 557 0.99 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_42 - 84 Urm1 PF09138.6 96 0.00029 13.2 0.1 1 1 5.7e-06 0.00035 12.9 0.1 18 96 12 83 3 83 0.72 # 47558 # 47809 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.298 1_18 - 983 AAA_11 PF13086.1 236 2.9e-06 19.2 1.5 1 2 0.058 1.8 0.2 0.0 3 37 449 484 447 516 0.84 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_18 - 983 AAA_11 PF13086.1 236 2.9e-06 19.2 1.5 2 2 8e-07 2.5e-05 16.2 0.1 193 232 536 578 522 580 0.75 # 21856 # 24804 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=9bp;gc_cont=0.388 1_19 - 612 AAA_11 PF13086.1 236 0.00016 13.5 0.0 1 1 8.9e-06 0.00027 12.7 0.0 19 112 184 299 151 389 0.73 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_19 - 612 T4SS-DNA_transf PF02534.9 469 2.3e-17 54.9 0.0 1 1 1.5e-17 9.5e-16 49.5 0.0 15 438 152 550 139 555 0.64 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_19 - 612 ArgK PF03308.11 267 0.00035 11.6 0.0 1 1 9.6e-06 0.00059 10.8 0.0 31 62 184 215 169 219 0.89 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 1_41 - 341 TrkA_N PF02254.13 116 9.2e-05 14.7 0.1 1 1 3.5e-06 0.00022 13.5 0.1 1 41 24 65 24 93 0.81 # 46531 # 47553 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.351 1_19 - 612 NACHT PF05729.7 166 0.00024 13.0 0.0 1 1 1.6e-05 0.00097 11.0 0.0 3 28 185 210 183 216 0.91 # 24819 # 26654 # -1 # ID=1_19;partial=00;start_type=GTG;rbs_motif=TAA;rbs_spacer=12bp;gc_cont=0.405 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e9ec2714-e67d-45c1-9aad-c86a10e17e07 # Target file: checkm_output/bins/pGCA_001766355.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001766355.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e9ec2714-e67d-45c1-9aad-c86a10e17e07 checkm_output/bins/pGCA_001766355.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:43 2020 # [ok]