# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_13 - 210 MipZ PF09140.6 261 3.1e-13 40.0 1.1 1 3 8e-12 1.6e-10 31.1 0.1 1 40 2 41 2 54 0.91 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 MipZ PF09140.6 261 3.1e-13 40.0 1.1 2 3 0.00018 0.0035 7.0 0.1 97 135 74 112 59 154 0.78 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 MipZ PF09140.6 261 3.1e-13 40.0 1.1 3 3 0.091 1.8 -1.9 0.0 212 241 168 197 162 206 0.71 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 YhjQ PF06564.7 244 2e-06 17.9 0.2 1 1 2.2e-07 4.5e-06 16.8 0.1 1 41 1 41 1 45 0.93 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 SRP54 PF00448.17 196 5.2e-05 13.4 0.1 1 1 4.4e-06 8.8e-05 12.6 0.1 10 38 11 39 2 84 0.91 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_17 PF13207.1 121 5.7e-07 21.1 0.0 1 1 4.4e-08 8.7e-07 20.5 0.0 9 78 12 89 11 144 0.63 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 MobB PF03205.9 140 7.8e-06 16.3 0.0 1 1 9.6e-07 1.9e-05 15.0 0.0 10 113 12 96 3 108 0.77 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 LpxK PF02606.9 326 2.2e-05 14.1 0.1 1 1 1.5e-06 3e-05 13.6 0.1 37 96 3 60 1 103 0.79 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 ArsA_ATPase PF02374.10 305 2.8e-07 20.4 0.1 1 1 1.4e-08 2.8e-07 20.4 0.1 6 46 7 47 1 62 0.85 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 Methyltransf_24 PF13578.1 106 1.5e-05 16.4 0.1 1 1 1.8e-06 3.5e-05 15.3 0.1 7 83 13 89 11 105 0.74 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 VirC1 PF07015.6 231 4.2e-08 23.1 0.0 1 1 2.7e-09 5.4e-08 22.8 0.0 1 180 1 172 1 200 0.78 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 Fer4_NifH PF00142.13 273 3.7e-05 13.6 0.0 1 1 3.4e-06 6.7e-05 12.7 0.0 6 40 8 42 2 65 0.89 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_16 PF13191.1 185 5.7e-05 13.8 0.0 1 2 3.1e-05 0.00062 10.4 0.0 34 70 12 49 10 77 0.87 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_16 PF13191.1 185 5.7e-05 13.8 0.0 2 2 0.015 0.29 1.7 0.0 52 85 96 128 78 206 0.74 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 CbiA PF01656.18 195 1.9e-31 99.6 0.3 1 1 1.9e-32 3.8e-31 98.6 0.3 1 158 4 142 4 174 0.76 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_31 PF13614.1 157 2e-09 28.2 0.0 1 2 1.1e-09 2.3e-08 24.8 0.0 2 41 3 42 2 46 0.93 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_31 PF13614.1 157 2e-09 28.2 0.0 2 2 0.019 0.38 1.3 0.0 119 154 77 111 60 114 0.78 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 KTI12 PF08433.5 270 0.00012 11.9 0.0 1 1 8.7e-06 0.00017 11.4 0.0 11 45 12 46 6 84 0.76 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_19 PF13245.1 76 2.2e-06 18.1 1.8 1 2 1.2e-06 2.4e-05 14.7 0.3 20 52 12 42 4 70 0.76 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_19 PF13245.1 76 2.2e-06 18.1 1.8 2 2 0.015 0.29 1.7 0.0 42 61 181 200 163 207 0.78 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_10 PF12846.2 304 6e-06 16.4 0.0 1 1 3.9e-07 7.9e-06 16.0 0.0 11 53 12 56 10 87 0.90 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 adh_short_C2 PF13561.1 241 3e-06 17.7 0.1 1 1 2.1e-07 4.1e-06 17.3 0.1 5 56 15 66 11 153 0.80 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 AAA_24 PF13479.1 213 4.3e-06 17.0 0.0 1 1 3.6e-07 7.2e-06 16.3 0.0 11 90 10 97 2 101 0.79 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_13 - 210 APS_kinase PF01583.15 157 5.8e-05 13.4 0.0 1 1 5.4e-06 0.00011 12.5 0.0 10 39 10 39 2 54 0.89 # 9203 # 9832 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/03036783-3a5d-44c3-92c8-2fcbc0cb1d4d # Target file: checkm_output/bins/pGCA_001718975.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001718975.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/03036783-3a5d-44c3-92c8-2fcbc0cb1d4d checkm_output/bins/pGCA_001718975.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:28 2020 # [ok]