# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_14 - 266 Mg_chelatase PF01078.16 207 4.2e-07 21.5 0.0 1 1 1.7e-08 1e-06 20.2 0.0 19 42 94 117 82 149 0.91 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 IstB_IS21 PF01695.12 178 6.6e-65 210.0 0.1 1 1 1.4e-66 8.7e-65 209.6 0.1 2 178 53 229 52 229 0.99 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_22 PF13401.1 131 3.2e-05 16.3 0.2 1 2 9.3e-05 0.0057 9.0 0.2 5 23 98 116 94 139 0.83 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_22 PF13401.1 131 3.2e-05 16.3 0.2 2 2 0.0016 0.1 5.0 0.0 80 117 152 194 120 202 0.65 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 PhoH PF02562.11 205 2.6e-08 25.5 0.0 1 1 8.9e-10 5.4e-08 24.5 0.0 17 89 95 170 85 204 0.81 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 MCM PF00493.18 331 0.0003 11.8 0.0 1 2 1.3e-05 0.00076 10.5 0.0 54 107 94 147 83 168 0.83 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 MCM PF00493.18 331 0.0003 11.8 0.0 2 2 0.073 4.5 -1.9 0.0 164 209 191 233 185 254 0.78 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_16 PF13191.1 185 0.00023 13.3 0.0 1 1 6.6e-06 0.0004 12.6 0.0 25 62 98 136 76 177 0.78 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 KaiC PF06745.8 227 0.00017 12.9 0.0 1 1 4.5e-06 0.00027 12.3 0.0 20 65 98 143 87 166 0.86 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA PF00004.24 132 2.8e-07 23.1 0.0 1 1 1e-08 6.2e-07 21.9 0.0 1 74 100 175 100 204 0.74 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 Bac_DnaA PF00308.13 219 1.2e-12 40.1 0.0 1 1 3.2e-14 2e-12 39.4 0.0 34 135 98 197 79 205 0.88 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 KTI12 PF08433.5 270 0.00045 11.6 0.0 1 1 1.4e-05 0.00085 10.7 0.0 4 81 100 170 99 201 0.84 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_30 PF13604.1 196 5.3e-05 15.0 0.2 1 1 2.4e-06 0.00014 13.6 0.2 19 54 99 134 91 176 0.77 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_19 PF13245.1 76 3.3e-07 22.3 0.1 1 1 2.8e-08 1.7e-06 20.0 0.1 10 47 98 131 92 137 0.77 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 DUF2075 PF09848.4 352 0.0004 11.6 0.1 1 1 1e-05 0.00063 10.9 0.1 3 37 100 133 98 164 0.66 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_16 - 42 UBX PF00789.15 82 0.00037 12.8 0.0 1 1 6.1e-06 0.00037 12.8 0.0 3 25 3 25 1 33 0.81 # 10214 # 10339 # 1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_19 - 126 UvrC_HhH_N PF08459.6 155 0.0004 12.1 0.1 1 1 1e-05 0.00062 11.5 0.1 59 87 8 35 2 39 0.86 # 11909 # 12286 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.614 1_14 - 266 ArgK PF03308.11 267 0.00042 11.3 0.1 1 1 1.7e-05 0.0011 10.0 0.0 24 60 93 129 77 135 0.76 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_44 - 320 tRNA_anti-codon PF01336.20 75 2.4e-08 26.0 0.0 1 2 0.04 2.4 0.4 0.0 39 61 217 239 214 243 0.86 # 30051 # 31010 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 1_44 - 320 tRNA_anti-codon PF01336.20 75 2.4e-08 26.0 0.0 2 2 9.5e-10 5.8e-08 24.8 0.0 4 59 232 289 229 303 0.75 # 30051 # 31010 # -1 # ID=1_44;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.695 1_14 - 266 NACHT PF05729.7 166 0.00047 12.1 0.3 1 2 3.6e-05 0.0022 9.9 0.1 3 33 100 130 98 160 0.80 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 NACHT PF05729.7 166 0.00047 12.1 0.3 2 2 0.054 3.3 -0.5 0.0 87 127 165 198 152 202 0.73 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_25 PF13481.1 194 5.1e-05 14.9 0.2 1 1 2.1e-06 0.00013 13.6 0.1 34 59 98 123 82 138 0.79 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_28 PF13521.1 163 2.9e-06 19.5 0.4 1 2 3.5e-07 2.1e-05 16.7 0.4 1 22 99 120 99 155 0.74 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 1_14 - 266 AAA_28 PF13521.1 163 2.9e-06 19.5 0.4 2 2 0.025 1.5 1.0 0.0 52 95 134 177 119 237 0.65 # 7659 # 8456 # -1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.608 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b3d196c2-0863-4c3b-822c-1118a6a8ee20 # Target file: checkm_output/bins/pGCA_001718795.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001718795.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b3d196c2-0863-4c3b-822c-1118a6a8ee20 checkm_output/bins/pGCA_001718795.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:29 2020 # [ok]