# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 261 Eno-Rase_NADH_b PF12242.3 78 0.00011 15.0 0.1 1 1 2.4e-06 0.00027 13.8 0.1 40 64 8 30 3 41 0.85 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_65 - 215 UPF0020 PF01170.13 180 6e-06 19.0 0.0 1 2 0.00021 0.025 7.3 0.0 103 120 17 34 7 79 0.79 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_65 - 215 UPF0020 PF01170.13 180 6e-06 19.0 0.0 2 2 3.4e-05 0.0039 9.8 0.0 27 44 162 179 156 206 0.79 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_110 - 229 MipZ PF09140.6 261 1.9e-11 36.6 2.6 1 3 8.3e-07 9.5e-05 14.6 0.1 2 39 3 39 2 45 0.89 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_110 - 229 MipZ PF09140.6 261 1.9e-11 36.6 2.6 2 3 3.4e-08 3.9e-06 19.2 0.2 79 134 60 113 42 127 0.86 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_110 - 229 MipZ PF09140.6 261 1.9e-11 36.6 2.6 3 3 0.0075 0.86 1.7 0.0 209 246 169 206 120 220 0.72 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_56 - 261 3HCDH_N PF02737.13 180 5.2e-05 16.0 0.5 1 1 1.1e-06 0.00012 14.8 0.5 3 73 11 82 9 92 0.77 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_55 - 655 GIDA PF01134.17 392 6.9e-06 18.2 1.8 1 1 2.2e-07 1.3e-05 17.3 1.5 1 40 377 416 377 446 0.83 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 GIDA PF01134.17 392 7.2e-05 14.8 0.2 1 1 1.8e-06 0.00011 14.3 0.2 2 28 6 32 5 59 0.81 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_71 - 896 UvrD_C_2 PF13538.1 104 9.4e-15 47.8 0.2 1 1 4.6e-16 5.3e-14 45.4 0.0 3 103 579 683 577 684 0.83 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_55 - 655 Pyr_redox_2 PF07992.9 201 2.1e-07 24.1 1.2 1 1 9.7e-08 5.6e-06 19.4 0.7 1 38 377 415 377 515 0.68 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 Pyr_redox_2 PF07992.9 201 3e-06 20.3 0.4 1 1 1.1e-07 6.2e-06 19.3 0.4 1 31 5 35 5 55 0.86 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_80 - 337 AAA_2 PF07724.9 171 0.00014 14.9 0.0 1 1 1.9e-06 0.00022 14.3 0.0 3 45 170 211 168 228 0.86 # 79817 # 80827 # -1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_88 - 839 DUF87 PF01935.12 229 1.1e-06 21.7 0.0 1 1 3e-08 3.5e-06 20.1 0.0 21 60 472 510 469 512 0.85 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_88 - 839 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 1 2 1.4e-05 0.00055 13.2 0.0 5 48 475 523 472 567 0.69 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_88 - 839 AAA_22 PF13401.1 131 1.1e-05 18.6 0.0 2 2 0.035 1.3 2.2 0.0 75 118 663 709 637 719 0.77 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_98 - 621 AAA_22 PF13401.1 131 0.00023 14.4 0.0 1 1 3.3e-05 0.0013 12.0 0.0 5 36 357 387 354 465 0.68 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_71 - 896 AAA_22 PF13401.1 131 0.00046 13.4 0.1 1 1 6.5e-05 0.0025 11.1 0.1 3 114 320 418 318 435 0.60 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_55 - 655 NAD_binding_7 PF13241.1 103 2.9e-05 17.4 0.0 1 1 1e-06 0.00012 15.5 0.0 8 41 376 414 372 482 0.64 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_65 - 215 N6_N4_Mtase PF01555.13 231 1.3e-34 112.7 0.0 1 1 6e-34 6.9e-32 103.8 0.0 1 229 21 201 21 203 0.88 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_17 - 173 AAA_17 PF13207.1 121 5.4e-09 30.1 0.0 1 1 1.9e-10 7.4e-09 29.6 0.0 1 77 25 92 25 170 0.72 # 12729 # 13247 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_110 - 229 AAA_17 PF13207.1 121 0.00049 14.0 0.0 1 1 1.7e-05 0.00064 13.7 0.0 8 77 11 85 3 155 0.71 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_71 - 896 AAA_17 PF13207.1 121 0.00098 13.1 0.2 1 1 0.00033 0.013 9.5 0.0 4 27 326 352 324 469 0.83 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_98 - 621 MobB PF03205.9 140 6.1e-05 15.9 0.0 1 1 4.6e-06 0.00013 14.8 0.0 2 25 358 381 357 384 0.89 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_80 - 337 MobB PF03205.9 140 7.2e-05 15.6 0.0 1 1 4.3e-06 0.00013 14.9 0.0 3 32 173 202 171 209 0.84 # 79817 # 80827 # -1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_88 - 839 MobB PF03205.9 140 0.00065 12.5 0.0 1 1 5.3e-05 0.0015 11.3 0.0 4 34 478 508 476 585 0.83 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_75 - 530 MobB PF03205.9 140 0.0011 11.8 0.0 1 1 6.1e-05 0.0018 11.1 0.0 3 34 141 172 139 177 0.93 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_110 - 229 ArsA_ATPase PF02374.10 305 3.5e-07 22.6 0.1 1 1 6.6e-09 7.6e-07 21.5 0.1 3 41 4 41 2 46 0.87 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_71 - 896 PhoH PF02562.11 205 3e-06 19.7 0.0 1 2 1.6e-05 0.0019 10.6 0.0 6 40 307 341 303 353 0.79 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 PhoH PF02562.11 205 3e-06 19.7 0.0 2 2 0.00031 0.036 6.4 0.0 120 172 393 445 371 482 0.80 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_80 - 337 T2SE PF00437.15 272 2.5e-61 200.0 0.0 1 1 7.4e-63 2.9e-61 199.8 0.0 4 270 15 320 12 322 0.96 # 79817 # 80827 # -1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_98 - 621 T2SE PF00437.15 272 5.9e-27 87.3 0.0 1 1 2.8e-28 1.1e-26 86.4 0.0 103 247 334 471 313 493 0.87 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_71 - 896 T2SE PF00437.15 272 0.00015 13.8 0.0 1 1 1.6e-05 0.0006 11.8 0.0 102 155 295 348 283 354 0.89 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_56 - 261 Shikimate_DH PF01488.15 135 1.6e-05 18.1 0.3 1 1 3.2e-07 3.7e-05 17.0 0.3 10 68 5 66 2 90 0.83 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_57 - 544 NAD_binding_8 PF13450.1 68 1e-07 25.1 1.0 1 1 5.1e-09 3e-07 23.6 1.0 1 29 8 36 8 37 0.96 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_55 - 655 NAD_binding_8 PF13450.1 68 3.4e-07 23.4 0.1 1 1 1.7e-08 9.9e-07 21.9 0.1 1 40 380 419 380 440 0.87 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 GMC_oxred_N PF00732.14 296 5.8e-75 245.2 0.0 1 1 1.2e-76 7.1e-75 244.9 0.0 1 295 4 301 4 302 0.95 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_30 - 330 GMC_oxred_N PF00732.14 296 2e-18 59.6 0.1 1 1 3.4e-20 2e-18 59.6 0.1 230 295 2 63 1 64 0.90 # 29368 # 30357 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.690 1_56 - 261 F420_oxidored PF03807.12 96 0.00018 15.1 0.1 1 1 2.9e-06 0.00034 14.2 0.1 10 47 19 52 13 79 0.80 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_57 - 544 FAD_binding_3 PF01494.14 356 1.2e-05 17.5 0.1 1 1 3.3e-07 1.9e-05 16.9 0.1 4 32 6 34 3 40 0.91 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_55 - 655 FAD_binding_3 PF01494.14 356 0.0014 10.8 2.2 1 1 5.3e-05 0.0031 9.6 2.2 3 35 377 409 376 412 0.94 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_110 - 229 VirC1 PF07015.6 231 4.5e-17 54.9 0.1 1 1 5.4e-19 6.2e-17 54.5 0.1 1 186 1 182 1 192 0.88 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_98 - 621 Arch_ATPase PF01637.13 234 8.1e-05 15.5 0.0 1 1 1.1e-06 0.00013 14.8 0.0 7 45 344 381 342 394 0.88 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_98 - 621 AAA_16 PF13191.1 185 8.4e-05 15.7 0.4 1 1 3.2e-05 0.0012 11.9 0.0 25 51 357 383 343 482 0.80 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_71 - 896 AAA_16 PF13191.1 185 0.00022 14.4 5.6 1 1 2.9e-05 0.0011 12.1 3.9 25 84 322 389 310 578 0.81 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_75 - 530 AAA_16 PF13191.1 185 0.00032 13.8 0.0 1 1 2.3e-05 0.00089 12.4 0.0 19 53 133 167 128 176 0.83 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_98 - 621 AAA_23 PF13476.1 202 0.0018 11.7 0.0 1 1 2.6e-05 0.003 11.0 0.0 20 36 357 373 340 376 0.89 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_75 - 530 AAA_18 PF13238.1 129 0.0012 12.2 0.3 1 1 2.3e-05 0.0026 11.2 0.0 1 39 141 182 141 198 0.80 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_56 - 261 adh_short PF00106.20 167 7.3e-27 87.4 1.6 1 1 9.6e-29 1.1e-26 86.8 1.6 3 161 10 166 8 171 0.94 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_110 - 229 CbiA PF01656.18 195 4e-22 71.6 0.4 1 1 1e-23 5.9e-22 71.1 0.4 1 161 4 147 4 179 0.80 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_88 - 839 CbiA PF01656.18 195 0.00081 11.9 0.0 1 1 2.5e-05 0.0015 11.1 0.0 7 46 482 518 478 609 0.56 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_98 - 621 AAA_14 PF13173.1 128 0.00058 12.9 0.0 1 1 1.1e-05 0.0012 11.9 0.0 4 32 358 390 356 455 0.67 # 94677 # 96539 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.591 1_55 - 655 HI0933_like PF03486.9 409 6.9e-06 17.8 0.7 1 1 2.2e-07 1.3e-05 16.9 0.7 2 36 377 411 376 417 0.93 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 HI0933_like PF03486.9 409 3.2e-05 15.6 0.2 1 1 1e-06 5.8e-05 14.7 0.2 2 33 5 36 4 42 0.93 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 544 FAD_binding_2 PF00890.19 417 1.3e-11 37.0 0.8 1 2 6.5e-11 3.7e-09 28.9 0.1 1 52 5 57 5 60 0.91 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 544 FAD_binding_2 PF00890.19 417 1.3e-11 37.0 0.8 2 2 0.00039 0.022 6.6 0.1 143 204 200 264 158 300 0.84 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_55 - 655 FAD_binding_2 PF00890.19 417 2.5e-06 19.6 2.5 1 1 7.2e-08 4.2e-06 18.9 2.0 2 38 378 414 377 419 0.90 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_71 - 896 AAA PF00004.24 132 2.1e-05 17.8 0.1 1 1 1.1e-06 0.00013 15.3 0.0 3 111 326 431 324 446 0.79 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_56 - 261 KR PF08659.5 181 2.4e-13 43.2 0.5 1 1 4e-15 4.6e-13 42.3 0.5 3 123 10 123 9 131 0.90 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_57 - 544 Thi4 PF01946.12 230 2.9e-05 16.3 0.1 1 1 4.5e-07 5.2e-05 15.5 0.1 18 48 4 34 1 37 0.93 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_62 - 610 PAPS_reduct PF01507.14 174 5.4e-12 39.0 0.0 1 1 1.5e-13 1.7e-11 37.3 0.0 3 149 48 231 46 237 0.81 # 58019 # 59848 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGxAG;rbs_spacer=5-10bp;gc_cont=0.637 1_55 - 655 Pyr_redox_3 PF13738.1 203 8.1e-05 15.8 0.9 1 2 1.2e-05 0.0007 12.8 0.2 1 48 379 425 379 462 0.88 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_55 - 655 Pyr_redox_3 PF13738.1 203 8.1e-05 15.8 0.9 2 2 0.098 5.6 0.0 0.0 179 198 524 543 436 546 0.71 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 Pyr_redox_3 PF13738.1 203 0.00091 12.4 0.5 1 2 0.00079 0.046 6.8 0.5 1 30 7 35 7 53 0.91 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 544 Pyr_redox_3 PF13738.1 203 0.00091 12.4 0.5 2 2 0.011 0.66 3.1 0.0 88 159 205 282 173 300 0.72 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_80 - 337 MMR_HSR1 PF01926.18 116 0.00063 12.8 0.0 1 1 9.2e-06 0.0011 12.1 0.0 7 29 178 197 172 232 0.72 # 79817 # 80827 # -1 # ID=1_80;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.568 1_46 - 248 NAD_binding_11 PF14833.1 122 1.6e-21 69.8 5.5 1 1 3.5e-23 2e-21 69.4 4.1 1 89 159 246 159 247 0.95 # 42205 # 42948 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_45 - 45 NAD_binding_11 PF14833.1 122 0.00011 15.4 0.0 1 1 2.1e-06 0.00012 15.3 0.0 92 121 1 30 1 31 0.94 # 42071 # 42205 # -1 # ID=1_45;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.600 1_75 - 530 TraG-D_C PF12696.2 128 5.5e-15 48.5 0.0 1 1 6.7e-17 7.7e-15 48.0 0.0 2 127 364 483 363 484 0.84 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_46 - 248 NAD_binding_2 PF03446.10 163 7.4e-23 74.3 0.1 1 2 5.4e-11 6.3e-09 29.0 0.0 2 44 5 47 4 66 0.89 # 42205 # 42948 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_46 - 248 NAD_binding_2 PF03446.10 163 7.4e-23 74.3 0.1 2 2 4e-15 4.6e-13 42.4 0.5 91 159 85 153 76 156 0.95 # 42205 # 42948 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_110 - 229 AAA_31 PF13614.1 157 1.1e-12 41.3 0.0 1 2 2.2e-11 2.5e-09 30.3 0.0 2 42 3 42 2 45 0.95 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_110 - 229 AAA_31 PF13614.1 157 1.1e-12 41.3 0.0 2 2 9.7e-05 0.011 8.7 0.0 95 152 52 111 47 116 0.88 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_75 - 530 AAA_33 PF13671.1 143 0.0004 13.4 0.0 1 1 1.7e-05 0.00099 12.1 0.0 2 22 141 161 141 279 0.89 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_17 - 173 AAA_33 PF13671.1 143 0.00087 12.3 0.0 1 1 2.1e-05 0.0012 11.8 0.0 2 76 26 91 25 120 0.73 # 12729 # 13247 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.572 1_65 - 215 Methyltransf_26 PF13659.1 117 2.7e-14 46.3 0.1 1 2 2.7e-08 3.1e-06 20.3 0.0 56 112 6 69 3 74 0.74 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_65 - 215 Methyltransf_26 PF13659.1 117 2.7e-14 46.3 0.1 2 2 2.1e-09 2.4e-07 23.9 0.0 1 44 164 206 164 213 0.88 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_46 - 248 2-Hacid_dh_C PF02826.14 178 1.9e-05 17.0 0.0 1 1 2.9e-07 3.3e-05 16.2 0.0 37 70 5 38 2 52 0.90 # 42205 # 42948 # -1 # ID=1_46;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.616 1_71 - 896 AAA_30 PF13604.1 196 6.1e-61 198.5 5.2 1 1 5.3e-63 6.1e-61 198.5 5.2 2 194 306 496 305 498 0.95 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_57 - 544 ApbA PF02558.11 151 6.2e-05 15.6 0.3 1 1 1e-06 0.00011 14.7 0.3 2 27 7 32 6 41 0.88 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_75 - 530 FtsK_SpoIIIE PF01580.13 205 1.3e-08 27.7 0.0 1 1 3.8e-10 4.4e-08 25.9 0.0 13 78 108 174 100 181 0.76 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_65 - 215 Met_10 PF02475.11 200 9.6e-05 15.1 0.0 1 1 1.5e-06 0.00017 14.3 0.0 94 143 155 203 152 212 0.82 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_57 - 544 Lycopene_cycl PF05834.7 374 1.3e-06 20.6 0.4 1 1 1.6e-08 1.9e-06 20.1 0.4 1 35 5 37 5 41 0.94 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_65 - 215 Cons_hypoth95 PF03602.10 183 1.9e-05 17.2 0.0 1 2 0.0001 0.011 8.1 0.0 112 161 18 69 5 79 0.64 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_65 - 215 Cons_hypoth95 PF03602.10 183 1.9e-05 17.2 0.0 2 2 0.00019 0.022 7.2 0.0 40 59 161 180 153 206 0.77 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_71 - 896 AAA_19 PF13245.1 76 3.7e-09 29.4 6.8 1 2 1.6e-10 9.2e-09 28.1 0.1 9 76 320 380 312 380 0.83 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 AAA_19 PF13245.1 76 3.7e-09 29.4 6.8 2 2 0.012 0.67 2.9 0.1 31 63 507 543 498 562 0.81 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_75 - 530 AAA_19 PF13245.1 76 3.7e-06 19.8 0.0 1 1 2.3e-07 1.3e-05 18.0 0.0 10 53 139 177 134 184 0.85 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_56 - 261 NAD_binding_10 PF13460.1 183 2e-06 21.0 0.3 1 1 5e-08 2.9e-06 20.5 0.3 1 73 10 94 10 127 0.84 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_55 - 655 NAD_binding_10 PF13460.1 183 0.0047 10.0 5.1 1 2 0.0016 0.093 5.8 1.2 1 28 378 404 378 411 0.92 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_55 - 655 NAD_binding_10 PF13460.1 183 0.0047 10.0 5.1 2 2 0.0042 0.24 4.4 0.1 55 110 453 510 443 563 0.67 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_88 - 839 AAA_10 PF12846.2 304 2.5e-19 62.9 0.0 1 1 8.9e-21 5.1e-19 61.8 0.0 2 294 475 746 474 755 0.83 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_75 - 530 AAA_10 PF12846.2 304 1.1e-07 24.6 0.2 1 2 1.8e-08 1e-06 21.4 0.0 2 40 139 177 138 180 0.96 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_75 - 530 AAA_10 PF12846.2 304 1.1e-07 24.6 0.2 2 2 0.028 1.6 1.1 0.0 218 267 360 405 227 431 0.77 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_56 - 261 adh_short_C2 PF13561.1 241 2.2e-22 73.0 0.0 1 1 2.4e-24 2.8e-22 72.7 0.0 5 240 16 253 14 254 0.86 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_55 - 655 FAD_oxidored PF12831.2 428 2.1e-06 20.1 1.5 1 1 3.2e-08 3.7e-06 19.3 1.5 2 38 378 414 377 421 0.96 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 DAO PF01266.19 358 1.1e-12 40.5 1.4 1 2 7.7e-11 4.4e-09 28.7 0.1 1 32 5 36 5 64 0.95 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_57 - 544 DAO PF01266.19 358 1.1e-12 40.5 1.4 2 2 2.2e-05 0.0012 10.8 0.1 150 211 201 272 186 296 0.81 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_55 - 655 DAO PF01266.19 358 4.9e-05 15.4 2.0 1 1 8.5e-07 4.9e-05 15.4 2.0 1 33 377 410 377 413 0.91 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_88 - 839 Zot PF05707.7 193 0.0012 11.4 0.2 1 1 2.7e-05 0.0031 10.1 0.1 62 142 654 733 631 751 0.75 # 85739 # 88255 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.573 1_71 - 896 Viral_helicase1 PF01443.13 234 1.9e-10 33.7 0.1 1 2 1.1e-05 0.0013 11.3 0.0 2 100 325 432 324 448 0.62 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 Viral_helicase1 PF01443.13 234 1.9e-10 33.7 0.1 2 2 5.7e-08 6.6e-06 18.9 0.0 185 232 643 683 594 685 0.88 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_55 - 655 FMO-like PF00743.14 532 0.0016 9.7 0.0 1 1 2e-05 0.0023 9.2 0.0 2 43 376 417 375 422 0.92 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_56 - 261 Epimerase PF01370.16 236 4.2e-08 26.0 0.1 1 1 5.4e-10 6.2e-08 25.4 0.1 1 91 10 107 10 125 0.82 # 50894 # 51676 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.608 1_75 - 530 DUF815 PF05673.8 250 3.2e-05 16.0 0.0 1 1 4.8e-07 5.5e-05 15.3 0.0 51 88 136 173 130 178 0.91 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_55 - 655 Pyr_redox PF00070.22 80 3.8e-08 26.8 1.0 1 2 3.2e-08 1.9e-06 21.4 0.6 1 35 377 411 377 420 0.92 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_55 - 655 Pyr_redox PF00070.22 80 3.8e-08 26.8 1.0 2 2 0.019 1.1 2.9 0.0 12 69 525 584 520 590 0.73 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_57 - 544 Pyr_redox PF00070.22 80 0.00023 14.7 0.4 1 1 1.6e-05 0.00094 12.7 0.2 3 32 7 36 5 42 0.92 # 53296 # 54927 # 1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.584 1_75 - 530 TrwB_AAD_bind PF10412.4 386 3.2e-107 351.5 0.0 1 1 3.3e-109 3.8e-107 351.3 0.0 2 385 125 502 124 503 0.98 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_71 - 896 AAA_11 PF13086.1 236 4e-06 19.6 0.0 1 2 0.0009 0.1 5.2 0.0 1 41 305 345 305 376 0.80 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 AAA_11 PF13086.1 236 4e-06 19.6 0.0 2 2 1.6e-05 0.0019 10.9 0.0 192 232 392 435 369 436 0.75 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_75 - 530 T4SS-DNA_transf PF02534.9 469 9.2e-11 34.0 0.0 1 2 0.0051 0.59 1.6 0.0 15 82 108 178 95 181 0.72 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_75 - 530 T4SS-DNA_transf PF02534.9 469 9.2e-11 34.0 0.0 2 2 1.2e-11 1.4e-09 30.1 0.0 215 426 281 484 249 492 0.87 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_65 - 215 MethyltransfD12 PF02086.10 260 2.7e-05 16.8 0.0 1 2 0.0026 0.3 3.5 0.0 178 219 21 62 12 95 0.65 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_65 - 215 MethyltransfD12 PF02086.10 260 2.7e-05 16.8 0.0 2 2 1.1e-05 0.0013 11.3 0.0 9 45 150 187 147 199 0.83 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_75 - 530 ArgK PF03308.11 267 3.3e-05 15.8 0.0 1 1 4.8e-07 5.5e-05 15.1 0.0 29 69 138 176 131 187 0.88 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_71 - 896 PIF1 PF05970.9 364 8.2e-06 18.0 0.0 1 2 5.9e-07 6.8e-05 15.0 0.0 21 75 320 374 306 416 0.74 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 PIF1 PF05970.9 364 8.2e-06 18.0 0.0 2 2 0.02 2.3 0.1 0.0 329 362 571 603 559 605 0.82 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_110 - 229 TrkA_N PF02254.13 116 0.00025 14.1 0.4 1 1 5.1e-06 0.00059 13.0 0.4 11 81 20 96 11 123 0.74 # 106991 # 107677 # -1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.557 1_55 - 655 AlaDh_PNT_C PF01262.16 168 1.6e-06 20.9 0.1 1 1 2.7e-08 3.1e-06 19.9 0.1 16 50 371 405 360 410 0.89 # 48927 # 50891 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.628 1_22 - 1050 tRNA_anti-codon PF01336.20 75 2.6e-07 23.6 0.0 1 1 4.9e-09 5.6e-07 22.5 0.0 4 59 962 1019 952 1033 0.77 # 18226 # 21375 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.679 1_75 - 530 AAA_25 PF13481.1 194 0.00034 13.1 0.0 1 1 7.1e-06 0.00081 11.9 0.0 34 62 139 168 108 179 0.80 # 74383 # 75972 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.613 1_65 - 215 Methyltransf_15 PF09445.5 164 0.00041 13.0 0.0 1 2 0.026 3 0.4 0.0 55 87 6 36 3 67 0.79 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_65 - 215 Methyltransf_15 PF09445.5 164 0.00041 13.0 0.0 2 2 2.6e-05 0.003 10.2 0.0 3 36 166 199 164 207 0.85 # 62542 # 63186 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.619 1_71 - 896 Herpes_Helicase PF02689.9 819 7.7e-06 16.9 0.2 1 3 0.038 4.4 -2.1 0.0 63 84 324 345 277 347 0.82 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 Herpes_Helicase PF02689.9 819 7.7e-06 16.9 0.2 2 3 0.055 6.3 -2.6 0.0 187 209 384 406 362 410 0.72 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 1_71 - 896 Herpes_Helicase PF02689.9 819 7.7e-06 16.9 0.2 3 3 3e-07 3.4e-05 14.8 0.1 740 783 640 681 621 687 0.81 # 67992 # 70679 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG(G)/GGAGG;rbs_spacer=13-15bp;gc_cont=0.601 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/43d4d7ff-7deb-4457-a538-667710ca7f5d # Target file: checkm_output/bins/pGCA_001718415.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001718415.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/43d4d7ff-7deb-4457-a538-667710ca7f5d checkm_output/bins/pGCA_001718415.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:27 2020 # [ok]