# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 419 RrnaAD PF00398.15 262 9.8e-06 16.7 0.1 1 3 3.4e-05 0.0018 9.3 0.0 33 81 2 56 1 70 0.83 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 419 RrnaAD PF00398.15 262 9.8e-06 16.7 0.1 2 3 0.0014 0.074 4.0 0.0 195 251 84 140 77 150 0.78 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 419 RrnaAD PF00398.15 262 9.8e-06 16.7 0.1 3 3 0.081 4.4 -1.8 0.0 70 93 282 307 262 344 0.62 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_4 - 598 IstB_IS21 PF01695.12 178 1.3e-06 19.9 0.0 1 2 1.5e-06 7.8e-05 14.2 0.0 46 85 32 71 25 84 0.89 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_4 - 598 IstB_IS21 PF01695.12 178 1.3e-06 19.9 0.0 2 2 0.005 0.27 2.6 0.1 96 139 108 159 98 182 0.71 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_29 - 640 AIG1 PF04548.11 212 0.00015 12.9 0.0 1 1 6.6e-06 0.00036 11.7 0.0 32 62 51 81 43 108 0.84 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_47 - 142 SSB PF00436.20 104 3e-28 89.9 0.2 1 1 7.1e-30 3.8e-28 89.5 0.2 1 102 1 102 1 104 0.98 # 44227 # 44652 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.329 1_39 - 331 DUF87 PF01935.12 229 5.9e-05 15.0 0.1 1 1 4.5e-06 0.00012 14.0 0.1 28 48 165 185 157 193 0.84 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_50 - 923 DUF87 PF01935.12 229 0.00021 13.1 4.5 1 2 0.00015 0.0039 9.0 0.0 26 49 548 571 539 584 0.84 # 45915 # 48683 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_50 - 923 DUF87 PF01935.12 229 0.00021 13.1 4.5 2 2 0.011 0.31 2.8 0.2 101 165 639 700 631 732 0.75 # 45915 # 48683 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_39 - 331 Septin PF00735.13 281 4e-05 14.7 0.0 1 1 2.3e-06 6.3e-05 14.1 0.0 6 29 162 185 158 209 0.80 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_29 - 640 Septin PF00735.13 281 0.00015 12.9 0.1 1 1 9.7e-06 0.00026 12.0 0.1 7 77 6 82 3 91 0.68 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_39 - 331 AAA_22 PF13401.1 131 1e-05 17.7 0.0 1 1 7.7e-07 2.1e-05 16.7 0.0 4 41 160 208 156 256 0.70 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 503 AAA_22 PF13401.1 131 0.0001 14.5 5.3 1 2 4.4e-05 0.0012 11.1 1.2 5 114 25 204 19 218 0.55 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_8 - 503 AAA_22 PF13401.1 131 0.0001 14.5 5.3 2 2 0.068 1.8 0.7 0.2 57 115 387 456 373 463 0.64 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_39 - 331 ATP_bind_1 PF03029.12 238 0.00012 13.6 0.0 1 1 3.7e-06 0.0002 13.0 0.0 1 23 165 187 165 193 0.87 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 PRK PF00485.13 194 0.00033 12.3 0.0 1 1 1.2e-05 0.00062 11.4 0.0 2 24 163 185 162 221 0.83 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_3 - 419 DNA_methylase PF00145.12 335 1e-65 214.0 9.5 1 2 4.5e-10 2.4e-08 25.4 0.1 3 44 3 46 1 66 0.86 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 419 DNA_methylase PF00145.12 335 1e-65 214.0 9.5 2 2 3.9e-60 2.1e-58 190.0 6.3 39 334 88 414 71 415 0.77 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_8 - 503 AAA_15 PF13175.1 415 2.3e-14 45.2 16.1 1 2 0.0016 0.086 3.8 2.5 16 38 18 40 2 53 0.79 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_8 - 503 AAA_15 PF13175.1 415 2.3e-14 45.2 16.1 2 2 4.3e-16 2.3e-14 45.2 16.1 256 411 74 215 46 219 0.80 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_39 - 331 AAA_17 PF13207.1 121 4.8e-06 19.5 0.1 1 1 4.5e-07 1.2e-05 18.2 0.1 2 49 163 207 162 303 0.82 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 503 AAA_17 PF13207.1 121 0.00099 12.0 4.8 1 1 3.2e-05 0.00087 12.2 0.2 2 57 27 93 26 232 0.70 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_8 - 503 AAA_21 PF13304.1 303 1.5e-16 53.1 13.5 1 1 5.7e-18 1.5e-16 53.1 13.5 2 301 27 218 26 220 0.74 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_15 - 94 AAA_21 PF13304.1 303 0.0014 10.6 11.7 1 1 6e-05 0.0016 10.4 11.7 80 162 6 88 2 92 0.93 # 12416 # 12697 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.195 1_29 - 640 Miro PF08477.8 119 1.1e-05 18.0 0.0 1 1 4.4e-07 2.4e-05 16.9 0.0 9 119 13 131 5 131 0.75 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_39 - 331 MobB PF03205.9 140 3.2e-05 15.7 0.6 1 2 2.2e-06 0.00012 13.8 0.0 3 27 163 187 161 199 0.81 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 MobB PF03205.9 140 3.2e-05 15.7 0.6 2 2 0.074 4 -0.8 0.1 20 44 296 320 294 321 0.80 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_20 - 1932 Helicase_C PF00271.26 78 2.1e-07 22.9 0.3 1 1 4.2e-08 2.3e-06 19.5 0.0 12 78 1515 1583 1508 1583 0.86 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_39 - 331 T2SE PF00437.15 272 1.8e-63 206.0 0.0 1 1 3.8e-65 2e-63 205.8 0.0 5 269 13 312 9 315 0.94 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 Zeta_toxin PF06414.7 201 6.7e-05 14.1 0.0 1 1 2e-06 0.00011 13.4 0.0 17 49 161 194 146 218 0.85 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 503 SMC_N PF02463.14 220 4.1e-07 21.4 6.4 1 1 7.5e-09 4.1e-07 21.4 6.4 14 202 14 219 4 230 0.65 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_39 - 331 Arch_ATPase PF01637.13 234 0.00014 13.6 0.0 1 1 4.1e-06 0.00022 13.0 0.0 23 81 163 225 151 273 0.83 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 AAA_16 PF13191.1 185 2.6e-05 16.3 0.0 1 1 6.4e-07 3.5e-05 15.9 0.0 24 81 160 234 144 305 0.76 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 AAA_23 PF13476.1 202 0.0021 10.4 6.5 1 2 0.09 4.8 -0.6 0.3 106 106 110 110 7 158 0.50 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 AAA_23 PF13476.1 202 0.0021 10.4 6.5 2 2 8.7e-06 0.00047 12.5 1.5 22 37 163 178 160 184 0.89 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 AAA_18 PF13238.1 129 0.00016 14.1 1.3 1 1 4.9e-06 0.00027 13.3 0.0 1 18 163 180 163 227 0.76 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_22 - 187 CbiA PF01656.18 195 3e-08 25.3 0.1 1 2 6.7e-07 3.6e-05 15.2 0.0 1 24 3 26 3 30 0.92 # 22543 # 23103 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.244 1_22 - 187 CbiA PF01656.18 195 3e-08 25.3 0.1 2 2 8.8e-05 0.0047 8.3 0.0 95 179 54 132 29 149 0.69 # 22543 # 23103 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.244 1_4 - 598 KaiC PF06745.8 227 2e-05 15.8 0.1 1 2 1.8e-06 0.0001 13.5 0.0 16 71 30 84 23 214 0.73 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_4 - 598 KaiC PF06745.8 227 2e-05 15.8 0.1 2 2 0.081 4.4 -1.7 0.0 133 156 329 352 321 358 0.83 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_39 - 331 AAA_14 PF13173.1 128 2.6e-05 16.2 0.1 1 1 2.2e-06 0.00012 14.0 0.0 2 54 160 211 159 254 0.75 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 GvpD PF07088.6 484 0.00025 11.4 0.0 1 1 6.1e-06 0.00033 11.0 0.0 8 42 158 192 150 258 0.83 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_29 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.6 0.3 1 3 0.044 2.4 -1.3 0.0 176 211 4 42 2 50 0.74 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_29 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.6 0.3 2 3 2e-08 1.1e-06 19.6 0.1 31 123 51 135 47 154 0.87 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_29 - 640 TIGR03594 TIGR03594 432 3.2e-08 24.6 0.3 3 3 0.006 0.33 1.5 0.0 304 347 196 239 187 265 0.79 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_39 - 331 AAA_29 PF13555.1 62 2.5e-05 15.8 0.0 1 1 2.2e-06 5.9e-05 14.6 0.0 22 40 159 177 142 184 0.85 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 503 AAA_29 PF13555.1 62 0.00013 13.5 0.3 1 1 1.3e-05 0.00035 12.2 0.3 18 37 19 38 12 41 0.76 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_39 - 331 Sigma54_activat PF00158.21 168 5.4e-05 14.8 0.0 1 1 2.1e-06 0.00012 13.7 0.0 11 43 149 181 142 198 0.84 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_29 - 640 MMR_HSR1 PF01926.18 116 2.5e-08 26.0 0.1 1 1 8.6e-10 4.7e-08 25.1 0.1 4 116 8 129 5 129 0.68 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_38 - 604 TraG-D_C PF12696.2 128 1.6e-28 91.2 0.0 1 2 1.9e-29 1e-27 88.6 0.0 2 127 406 528 405 529 0.89 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_38 - 604 TraG-D_C PF12696.2 128 1.6e-28 91.2 0.0 2 2 0.069 3.7 -0.5 0.0 52 70 580 601 560 603 0.74 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_39 - 331 NTPase_1 PF03266.10 168 0.00037 12.2 0.1 1 1 1.3e-05 0.00072 11.3 0.1 1 23 162 184 162 192 0.88 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_4 - 598 DnaB_C PF03796.10 259 1.3e-05 16.2 0.0 1 2 8.4e-07 4.5e-05 14.4 0.0 13 112 27 131 21 156 0.81 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_4 - 598 DnaB_C PF03796.10 259 1.3e-05 16.2 0.0 2 2 0.015 0.8 0.5 0.0 122 185 113 177 98 179 0.69 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_20 - 1932 Methyltransf_26 PF13659.1 117 3.1e-13 41.9 0.0 1 1 3.4e-14 9.3e-13 40.3 0.0 3 116 311 421 309 422 0.84 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_3 - 419 Methyltransf_26 PF13659.1 117 0.00067 11.8 0.0 1 1 4.4e-05 0.0012 11.0 0.0 3 88 2 132 1 155 0.72 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_39 - 331 FtsK_SpoIIIE PF01580.13 205 8.7e-08 23.9 0.0 1 1 5.4e-09 1.4e-07 23.1 0.0 39 59 157 181 132 187 0.81 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_50 - 923 FtsK_SpoIIIE PF01580.13 205 5.6e-05 14.7 0.0 1 1 4.3e-06 0.00012 13.7 0.0 39 63 539 570 514 576 0.74 # 45915 # 48683 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_20 - 1932 MTS PF05175.9 170 2.7e-05 15.6 0.0 1 1 1.4e-06 7.8e-05 14.1 0.0 32 142 309 422 301 441 0.76 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_27 - 175 VirE PF05272.6 198 0.00017 13.1 0.1 1 1 4.5e-06 0.00024 12.6 0.1 45 117 31 105 6 107 0.82 # 24871 # 25395 # -1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_39 - 331 ABC_tran PF00005.22 137 1.8e-07 23.6 0.0 1 1 1.4e-08 3.7e-07 22.6 0.0 4 50 153 200 151 226 0.84 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_8 - 503 ABC_tran PF00005.22 137 0.00029 13.2 9.1 1 1 2.7e-06 7.3e-05 15.1 3.4 13 135 26 184 19 185 0.56 # 7636 # 9144 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.226 1_3 - 419 Cons_hypoth95 PF03602.10 183 2.3e-05 15.9 0.1 1 2 1.3e-05 0.00069 11.1 0.0 46 92 3 49 1 69 0.78 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_3 - 419 Cons_hypoth95 PF03602.10 183 2.3e-05 15.9 0.1 2 2 0.012 0.66 1.3 0.0 27 40 270 283 267 306 0.65 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_20 - 1932 Eco57I PF07669.6 106 1.6e-08 27.0 2.6 1 1 7.2e-10 3.9e-08 25.7 0.4 3 104 371 472 369 474 0.84 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_50 - 923 AAA_10 PF12846.2 304 8.8e-40 129.0 1.1 1 1 1.6e-40 3e-39 127.2 0.2 2 301 546 843 545 845 0.84 # 45915 # 48683 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.296 1_39 - 331 AAA_10 PF12846.2 304 3.1e-06 18.8 0.0 1 1 2e-07 3.7e-06 18.6 0.0 2 37 161 196 160 323 0.79 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_38 - 604 AAA_10 PF12846.2 304 3.5e-05 15.3 0.0 1 1 3e-06 5.4e-05 14.7 0.0 25 302 147 490 126 491 0.70 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_20 - 1932 ResIII PF04851.10 184 2.1e-10 32.7 9.8 1 1 7.8e-12 2.1e-10 32.7 9.8 2 161 999 1195 998 1242 0.62 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_39 - 331 ResIII PF04851.10 184 4e-05 15.5 0.0 1 1 2.9e-06 7.9e-05 14.6 0.0 3 64 145 201 140 237 0.70 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_29 - 640 GTP_EFTU_D2 PF03144.20 74 6.1e-09 28.0 0.0 1 1 2.3e-10 1.3e-08 27.0 0.0 3 60 265 316 263 323 0.90 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_20 - 1932 DEAD PF00270.24 169 1.1e-08 26.7 0.7 1 3 8.8e-08 2.4e-06 19.2 0.0 2 106 1003 1108 1002 1120 0.81 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_20 - 1932 DEAD PF00270.24 169 1.1e-08 26.7 0.7 2 3 0.01 0.28 2.7 0.1 114 133 1172 1194 1158 1244 0.75 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_20 - 1932 DEAD PF00270.24 169 1.1e-08 26.7 0.7 3 3 0.073 2 -0.1 0.0 120 150 1885 1917 1843 1926 0.70 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_39 - 331 DEAD PF00270.24 169 5e-06 18.1 0.0 1 1 3.4e-07 9.3e-06 17.2 0.0 3 69 149 212 147 243 0.69 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_38 - 604 TrwB_AAD_bind PF10412.4 386 9.3e-20 62.5 0.0 1 2 3.8e-05 0.001 9.7 0.0 42 125 150 245 121 290 0.72 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_38 - 604 TrwB_AAD_bind PF10412.4 386 9.3e-20 62.5 0.0 2 2 1.2e-17 3.3e-16 50.8 0.0 185 380 345 542 307 544 0.84 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_39 - 331 TrwB_AAD_bind PF10412.4 386 0.00011 12.9 0.0 1 1 5.8e-06 0.00016 12.4 0.0 16 42 161 187 153 217 0.85 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_38 - 604 T4SS-DNA_transf PF02534.9 469 3.1e-107 351.0 0.1 1 1 8.5e-109 4.6e-107 350.4 0.1 2 461 93 565 82 571 0.84 # 36289 # 38100 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.300 1_29 - 640 GTP_EFTU PF00009.22 188 1.2e-59 192.9 0.4 1 1 3.2e-61 1.7e-59 192.4 0.4 2 185 2 237 1 240 0.92 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_39 - 331 RNA_helicase PF00910.17 107 0.00011 14.4 0.0 1 1 5.8e-06 0.00032 13.0 0.0 1 23 163 185 163 224 0.79 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 UPF0079 PF02367.12 123 1.5e-05 16.7 0.0 1 1 5.3e-07 2.8e-05 15.8 0.0 8 42 153 187 147 205 0.85 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_29 - 640 EFG_IV PF03764.13 120 6.8e-26 82.3 0.0 1 1 3.5e-27 1.9e-25 80.8 0.0 1 120 416 532 416 532 0.98 # 27280 # 29199 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.406 1_39 - 331 AAA_24 PF13479.1 213 0.00014 13.5 0.0 1 1 4.9e-06 0.00026 12.6 0.0 5 33 162 188 159 217 0.84 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_39 - 331 NACHT PF05729.7 166 1.8e-05 16.4 0.0 1 1 5.9e-07 3.2e-05 15.7 0.0 3 22 163 182 161 188 0.89 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_4 - 598 AAA_25 PF13481.1 194 5.2e-22 70.2 0.0 1 1 3.5e-23 9.5e-22 69.3 0.0 30 193 30 175 27 176 0.89 # 4599 # 6392 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.263 1_39 - 331 AAA_25 PF13481.1 194 0.00014 13.3 0.0 1 1 7.7e-06 0.00021 12.8 0.0 26 56 154 183 128 200 0.76 # 38101 # 39093 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.321 1_3 - 419 Methyltransf_15 PF09445.5 164 0.00011 13.8 2.1 1 1 4e-06 0.00022 12.9 0.3 3 49 2 49 1 160 0.68 # 3191 # 4447 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.259 1_20 - 1932 SNF2_N PF00176.18 299 6.8e-21 66.3 5.1 1 3 2.2e-22 1.2e-20 65.5 0.3 24 204 1014 1274 954 1335 0.73 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_20 - 1932 SNF2_N PF00176.18 299 6.8e-21 66.3 5.1 2 3 0.0096 0.52 1.0 0.1 194 286 1461 1557 1444 1566 0.73 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 1_20 - 1932 SNF2_N PF00176.18 299 6.8e-21 66.3 5.1 3 3 0.043 2.3 -1.1 0.1 123 151 1872 1901 1835 1924 0.70 # 16432 # 22227 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.295 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/05c0ac29-e80b-4089-b461-fdd5e7d46b96 # Target file: checkm_output/bins/pGCA_001717625.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001717625.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/05c0ac29-e80b-4089-b461-fdd5e7d46b96 checkm_output/bins/pGCA_001717625.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:23 2020 # [ok]