# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 303 DUF2431 PF10354.4 166 0.0014 10.4 5.5 1 1 0.0017 0.081 4.7 5.5 117 156 169 261 20 267 0.48 # 9914 # 10822 # 1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.240 1_14 - 57 cobW PF02492.14 178 0.00014 13.1 0.1 1 1 3.6e-06 0.00017 12.9 0.1 3 21 29 47 27 54 0.83 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 MipZ PF09140.6 261 1.2e-11 36.0 0.1 1 2 2.9e-10 1.4e-08 25.9 0.1 2 59 4 61 3 89 0.83 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 MipZ PF09140.6 261 1.2e-11 36.0 0.1 2 2 5.4e-05 0.0026 8.7 0.0 82 125 111 154 60 165 0.75 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 YhjQ PF06564.7 244 3.8e-12 37.9 0.0 1 1 1e-13 4.9e-12 37.5 0.0 4 151 5 161 1 181 0.86 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_4 - 131 SSB PF00436.20 104 6.5e-25 78.9 0.0 1 1 1.7e-26 8.1e-25 78.6 0.0 1 103 1 98 1 99 0.96 # 1083 # 1475 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.364 1_14 - 57 NB-ARC PF00931.17 287 0.0002 12.1 0.0 1 1 4.2e-06 0.0002 12.1 0.0 18 37 25 44 12 51 0.85 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_22 PF13401.1 131 9.3e-05 14.4 0.0 1 1 2.4e-06 0.00011 14.2 0.0 5 25 27 47 22 52 0.85 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 ATP_bind_1 PF03029.12 238 5.1e-05 14.7 1.6 1 1 1.1e-05 0.00052 11.4 1.6 6 99 13 136 11 183 0.64 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 SRP54 PF00448.17 196 2.4e-05 15.7 0.4 1 2 2.2e-06 0.0001 13.6 0.2 11 56 13 58 2 90 0.77 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 SRP54 PF00448.17 196 2.4e-05 15.7 0.4 2 2 0.053 2.5 -0.7 0.0 69 90 114 134 98 136 0.71 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 AAA_15 PF13175.1 415 3.1e-05 14.9 0.0 1 1 6.6e-07 3.1e-05 14.9 0.0 17 41 18 45 4 53 0.76 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_17 PF13207.1 121 0.00021 14.0 0.1 1 1 5.8e-06 0.00027 13.6 0.1 2 16 29 43 28 44 0.91 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_15 - 77 AAA_21 PF13304.1 303 4.8e-10 31.6 0.1 1 1 2e-11 4.8e-10 31.6 0.1 227 278 25 73 4 76 0.85 # 8607 # 8837 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.286 1_14 - 57 AAA_21 PF13304.1 303 8.8e-08 24.2 0.1 1 1 4.7e-09 1.1e-07 23.9 0.1 2 23 29 50 28 55 0.88 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 Miro PF08477.8 119 5.8e-06 18.7 0.1 1 1 1.9e-07 8.7e-06 18.1 0.1 2 25 29 52 29 55 0.92 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 MobB PF03205.9 140 4.5e-05 15.0 0.1 1 1 1.2e-06 5.5e-05 14.8 0.1 3 19 29 45 27 51 0.88 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 ArsA_ATPase PF02374.10 305 7.1e-16 49.9 0.2 1 1 1.9e-17 8.9e-16 49.5 0.2 2 137 3 138 2 180 0.88 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 T2SE PF00437.15 272 0.00027 11.7 0.0 1 1 5.8e-06 0.00027 11.7 0.0 127 148 25 46 2 53 0.82 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 SMC_N PF02463.14 220 3.8e-06 18.1 0.1 1 1 8.1e-08 3.8e-06 18.1 0.1 23 43 25 45 4 53 0.79 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 VirC1 PF07015.6 231 6.1e-06 17.3 0.4 1 2 8.3e-07 3.9e-05 14.6 0.1 2 40 3 41 2 71 0.88 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 VirC1 PF07015.6 231 6.1e-06 17.3 0.4 2 2 0.014 0.67 0.8 0.0 82 152 126 176 93 207 0.62 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_7 - 236 Fer4_NifH PF00142.13 273 4.2e-08 24.5 0.6 1 1 1.4e-09 6.6e-08 23.8 0.1 6 54 7 57 2 85 0.85 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 AAA_16 PF13191.1 185 9.5e-05 14.3 0.0 1 1 2e-06 9.6e-05 14.2 0.0 25 44 27 46 12 52 0.83 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_23 PF13476.1 202 4.3e-08 25.5 0.2 1 1 1e-09 4.8e-08 25.4 0.2 11 40 17 47 6 49 0.72 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_13 PF13166.1 712 0.00022 11.6 0.0 1 1 4.6e-06 0.00022 11.6 0.0 23 39 33 49 13 55 0.86 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 CbiA PF01656.18 195 1.5e-33 107.6 0.1 1 1 3.8e-35 1.8e-33 107.4 0.1 1 193 5 231 5 233 0.79 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 KaiC PF06745.8 227 0.00024 12.1 0.1 1 1 5.6e-06 0.00026 11.9 0.1 15 39 22 46 11 50 0.85 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_29 PF13555.1 62 1.4e-06 19.7 0.0 1 1 3e-08 1.4e-06 19.6 0.0 17 43 21 46 8 54 0.78 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 DUF258 PF03193.11 161 4.3e-05 14.6 0.0 1 1 9.2e-07 4.3e-05 14.6 0.0 12 56 2 47 1 54 0.85 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 DLIC PF05783.6 472 0.00023 11.7 0.0 1 1 4.9e-06 0.00023 11.7 0.0 21 55 22 56 6 56 0.87 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_7 - 236 AAA_31 PF13614.1 157 3.5e-15 48.1 0.3 1 1 1.3e-16 6.1e-15 47.3 0.3 1 149 3 158 3 165 0.79 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 FtsK_SpoIIIE PF01580.13 205 0.00017 12.9 0.0 1 1 3.7e-06 0.00018 12.9 0.0 24 58 12 46 2 48 0.81 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 Dynamin_N PF00350.18 168 0.00015 13.4 0.0 1 1 3.6e-06 0.00017 13.3 0.0 1 22 29 50 29 56 0.87 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_15 - 77 ABC_tran PF00005.22 137 3.9e-15 48.2 0.0 1 1 1.9e-16 4.5e-15 48.0 0.0 84 136 14 62 6 63 0.94 # 8607 # 8837 # 1 # ID=1_15;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.286 1_14 - 57 ABC_tran PF00005.22 137 9.3e-13 40.5 0.0 1 1 4.5e-14 1.1e-12 40.3 0.0 1 40 16 55 16 56 0.97 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_10 PF12846.2 304 0.00052 11.3 0.3 1 1 1.2e-05 0.00056 11.2 0.3 5 21 30 46 26 55 0.83 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 2_5 - 266 Ribosomal_L2 PF00181.18 77 0.0055 8.6 8.3 1 2 0.0044 0.21 3.5 1.2 18 58 3 51 1 59 0.75 # 2808 # 3605 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.271 2_5 - 266 Ribosomal_L2 PF00181.18 77 0.0055 8.6 8.3 2 2 0.00014 0.0066 8.3 0.1 11 35 227 251 222 257 0.82 # 2808 # 3605 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.271 1_7 - 236 ParA PF10609.4 81 0.00027 12.7 0.5 1 1 1.1e-05 0.00053 11.7 0.1 2 51 129 176 128 182 0.79 # 2715 # 3422 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.359 1_14 - 57 ArgK PF03308.11 267 0.00052 10.6 0.0 1 1 1.1e-05 0.00052 10.6 0.0 27 50 24 47 9 53 0.80 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 GTP_EFTU PF00009.22 188 0.00031 12.0 0.0 1 1 6.9e-06 0.00032 12.0 0.0 3 26 26 49 24 56 0.83 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 NACHT PF05729.7 166 3e-05 15.6 0.2 1 1 7.8e-07 3.7e-05 15.3 0.2 3 21 29 47 27 51 0.85 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 1_14 - 57 AAA_25 PF13481.1 194 0.00028 12.2 0.0 1 1 6.7e-06 0.00031 12.0 0.0 30 50 23 43 17 48 0.92 # 8341 # 8511 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.322 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/776bfbce-ce6d-4eb4-ae7d-818cc09adb51 # Target file: checkm_output/bins/pGCA_001714745.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001714745.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/776bfbce-ce6d-4eb4-ae7d-818cc09adb51 checkm_output/bins/pGCA_001714745.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:20 2020 # [ok]