# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_49 - 76 IstB_IS21 PF01695.12 178 3.9e-14 45.1 0.2 1 1 6.7e-16 5.6e-14 44.6 0.2 143 178 1 36 1 36 0.97 # 49883 # 50110 # 1 # ID=1_49;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_70 - 378 MipZ PF09140.6 261 3.7e-05 15.5 0.1 1 2 2.4e-06 0.0002 13.1 0.0 8 42 94 128 85 133 0.86 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 378 MipZ PF09140.6 261 3.7e-05 15.5 0.1 2 2 0.039 3.2 -0.7 0.0 98 128 235 265 231 276 0.88 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_40 - 776 DUF87 PF01935.12 229 7.1e-05 15.3 0.0 1 1 3.3e-06 0.00027 13.4 0.0 12 38 126 151 114 154 0.76 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_60 - 82 Ribosomal_L22 PF00237.14 105 4.5e-05 16.1 0.0 1 1 6.4e-07 5.3e-05 15.8 0.0 61 91 24 54 3 61 0.82 # 60468 # 60713 # -1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.508 1_10 - 567 AAA_22 PF13401.1 131 2.4e-06 20.4 0.0 1 1 1.4e-07 5.7e-06 19.2 0.0 3 64 284 357 280 404 0.74 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_13 - 299 AAA_22 PF13401.1 131 0.00075 12.3 0.7 1 2 0.08 3.3 0.5 0.0 73 100 33 61 16 89 0.70 # 11850 # 12746 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.559 1_13 - 299 AAA_22 PF13401.1 131 0.00075 12.3 0.7 2 2 0.0002 0.0083 8.9 0.2 2 20 102 120 100 129 0.87 # 11850 # 12746 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 567 AAA_17 PF13207.1 121 0.00071 13.1 0.8 1 1 2.2e-05 0.0018 11.7 0.3 2 22 288 308 287 418 0.70 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_70 - 378 ArsA_ATPase PF02374.10 305 3.7e-07 22.0 0.1 1 2 1.4e-06 0.00012 13.8 0.1 6 40 92 126 87 139 0.89 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 378 ArsA_ATPase PF02374.10 305 3.7e-07 22.0 0.1 2 2 0.00036 0.03 5.9 0.0 125 141 234 250 229 270 0.89 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 567 T2SE PF00437.15 272 4.8e-33 106.8 0.0 1 1 2.9e-34 8e-33 106.1 0.0 7 254 151 416 145 433 0.78 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_20 - 401 T2SE PF00437.15 272 4.2e-30 97.1 0.0 1 1 2e-31 5.6e-30 96.7 0.0 9 270 38 318 32 320 0.87 # 18085 # 19287 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.559 1_13 - 299 T2SE PF00437.15 272 1.2e-12 39.9 0.0 1 1 5.5e-14 1.5e-12 39.6 0.0 128 261 104 245 37 254 0.80 # 11850 # 12746 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.559 1_70 - 378 Fer4_NifH PF00142.13 273 0.00014 13.7 0.1 1 1 2.8e-06 0.00023 13.0 0.1 7 43 94 130 87 135 0.91 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_13 - 299 AAA_23 PF13476.1 202 0.00029 13.8 0.4 1 1 1.2e-05 0.00048 13.1 0.4 20 38 105 123 99 129 0.91 # 11850 # 12746 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.559 1_20 - 401 AAA_23 PF13476.1 202 0.00094 12.2 0.1 1 1 3.7e-05 0.0015 11.5 0.1 18 39 167 188 154 215 0.82 # 18085 # 19287 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.559 1_10 - 567 AAA_18 PF13238.1 129 0.00053 13.0 0.0 1 1 1.5e-05 0.0013 11.7 0.0 4 68 291 360 288 419 0.76 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_70 - 378 CbiA PF01656.18 195 8.7e-23 73.3 0.0 1 1 1.8e-24 1.5e-22 72.6 0.0 6 176 94 321 89 339 0.74 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 567 AAA_29 PF13555.1 62 0.00014 14.1 0.1 1 1 3.5e-06 0.00029 13.0 0.1 27 42 289 304 276 307 0.84 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_40 - 776 TraG-D_C PF12696.2 128 1.3e-09 30.6 0.1 1 1 3.6e-11 3e-09 29.5 0.1 1 127 437 559 437 560 0.76 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_70 - 378 AAA_31 PF13614.1 157 6.1e-05 15.6 0.0 1 2 1.5e-05 0.0012 11.4 0.0 8 41 94 127 88 155 0.87 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_70 - 378 AAA_31 PF13614.1 157 6.1e-05 15.6 0.0 2 2 0.015 1.2 1.7 0.0 117 154 235 271 232 274 0.86 # 66297 # 67430 # 1 # ID=1_70;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 567 AAA_30 PF13604.1 196 0.00016 13.9 0.0 1 1 4.1e-06 0.00034 12.8 0.0 2 38 269 305 268 320 0.90 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_40 - 776 FtsK_SpoIIIE PF01580.13 205 7.2e-05 15.0 0.0 1 2 5e-06 0.00041 12.5 0.0 27 55 124 153 115 162 0.87 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_40 - 776 FtsK_SpoIIIE PF01580.13 205 7.2e-05 15.0 0.0 2 2 0.068 5.7 -1.0 0.0 180 202 451 473 418 479 0.85 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_32 - 1018 AAA_10 PF12846.2 304 2.1e-34 111.9 0.0 1 1 1.1e-35 3.1e-34 111.3 0.0 4 302 497 896 494 898 0.91 # 29587 # 32640 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_40 - 776 AAA_10 PF12846.2 304 3.1e-11 35.8 0.1 1 1 2.8e-12 7.7e-11 34.5 0.1 2 298 137 512 136 518 0.70 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_10 - 567 AAA_10 PF12846.2 304 0.00085 11.4 0.9 1 1 8.6e-05 0.0024 9.9 0.1 4 23 288 307 285 325 0.84 # 8441 # 10141 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_74 - 74 FAD_oxidored PF12831.2 428 1.9e-05 16.5 0.0 1 1 2.2e-07 1.9e-05 16.5 0.0 135 167 39 71 11 73 0.86 # 69866 # 70087 # 1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.613 1_40 - 776 TrwB_AAD_bind PF10412.4 386 4.3e-12 37.9 1.8 1 3 8.7e-07 7.2e-05 14.1 0.0 10 35 131 156 126 175 0.78 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_40 - 776 TrwB_AAD_bind PF10412.4 386 4.3e-12 37.9 1.8 2 3 0.096 7.9 -2.5 0.0 105 143 248 286 237 320 0.63 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_40 - 776 TrwB_AAD_bind PF10412.4 386 4.3e-12 37.9 1.8 3 3 2.6e-09 2.2e-07 22.4 0.1 248 375 441 568 424 572 0.78 # 40206 # 42533 # 1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_4 - 181 TIGR00922 TIGR00922 172 3.9e-07 22.4 0.0 1 1 5.8e-09 4.8e-07 22.1 0.0 48 104 44 103 7 144 0.76 # 3231 # 3773 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.477 1_20 - 401 AAA_25 PF13481.1 194 5.5e-05 15.2 0.0 1 1 2.5e-06 0.0001 14.4 0.0 12 53 147 188 138 194 0.83 # 18085 # 19287 # 1 # ID=1_20;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.559 1_13 - 299 AAA_25 PF13481.1 194 0.00012 14.1 0.3 1 1 1.3e-05 0.00054 12.0 0.0 22 58 92 129 69 145 0.78 # 11850 # 12746 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.559 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/afead133-2347-4fff-9bec-0fe46338ef2a # Target file: checkm_output/bins/pGCA_001708485.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001708485.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/afead133-2347-4fff-9bec-0fe46338ef2a checkm_output/bins/pGCA_001708485.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:22 2020 # [ok]