# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 354 Mg_chelatase PF01078.16 207 0.0005 11.7 0.0 1 1 1.2e-05 0.00088 10.9 0.0 22 51 172 201 155 228 0.82 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 96 IstB_IS21 PF01695.12 178 0.00012 14.0 0.1 1 1 2.5e-05 0.0006 11.7 0.1 56 80 12 36 4 91 0.90 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_25 - 211 IstB_IS21 PF01695.12 178 0.00046 12.1 0.1 1 1 0.00012 0.0029 9.5 0.1 56 80 12 36 5 104 0.90 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_17 - 354 IstB_IS21 PF01695.12 178 0.00068 11.5 0.0 1 1 5.3e-05 0.0013 10.6 0.0 46 68 171 193 136 201 0.79 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 267 MipZ PF09140.6 261 4.3e-15 47.9 0.0 1 1 4.1e-16 9.8e-15 46.7 0.0 2 129 3 143 2 165 0.72 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 MipZ PF09140.6 261 1.4e-09 29.8 0.7 1 2 1.6e-07 3.7e-06 18.6 0.1 2 46 4 48 3 62 0.89 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_25 - 211 MipZ PF09140.6 261 1.4e-09 29.8 0.7 2 2 9.3e-05 0.0022 9.5 0.0 91 130 72 111 55 121 0.80 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_11 - 96 MipZ PF09140.6 261 4.6e-07 21.5 0.0 1 1 2e-08 4.7e-07 21.5 0.0 2 48 4 50 3 76 0.88 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_17 - 354 AIG1 PF04548.11 212 0.00052 11.6 0.0 1 1 1.2e-05 0.00088 10.8 0.0 2 20 174 192 173 219 0.90 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_33 - 550 UvrD_C_2 PF13538.1 104 8.8e-12 37.6 0.0 1 1 3.6e-13 2.6e-11 36.1 0.0 2 103 194 291 193 292 0.76 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_24 - 814 DUF87 PF01935.12 229 0.00012 14.4 0.6 1 1 3.5e-06 0.00025 13.3 0.1 25 54 449 477 446 487 0.84 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_17 - 354 AAA_22 PF13401.1 131 0.00012 14.7 0.0 1 1 1.3e-05 0.00032 13.3 0.0 5 38 173 216 167 245 0.74 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_24 - 814 AAA_22 PF13401.1 131 0.00021 13.9 0.0 1 1 2.3e-05 0.00056 12.5 0.0 5 57 448 493 444 558 0.67 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_33 - 550 AAA_22 PF13401.1 131 0.0004 13.0 0.0 1 1 4.8e-05 0.0011 11.5 0.0 88 125 28 64 7 70 0.84 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_18 - 405 tRNA_anti-like PF12869.2 144 0.00023 13.1 0.3 1 1 6.3e-06 0.00045 12.2 0.3 2 51 39 89 38 105 0.86 # 12806 # 14020 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_34 - 267 SRP54 PF00448.17 196 4.1e-05 15.5 0.3 1 2 2e-05 0.0015 10.4 0.0 10 45 11 45 2 61 0.80 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 267 SRP54 PF00448.17 196 4.1e-05 15.5 0.3 2 2 0.0039 0.28 3.0 0.0 67 96 97 125 74 132 0.64 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 AAA_17 PF13207.1 121 9e-06 19.0 0.0 1 1 8.2e-07 2e-05 17.9 0.0 9 87 13 101 11 169 0.61 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_11 - 96 AAA_17 PF13207.1 121 2.3e-05 17.7 0.1 1 1 1.7e-06 4e-05 16.9 0.1 9 32 13 41 11 92 0.67 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_17 - 354 AAA_17 PF13207.1 121 6.7e-05 16.2 0.0 1 1 7.4e-06 0.00018 14.8 0.0 2 20 175 193 174 264 0.84 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 96 MobB PF03205.9 140 4.5e-07 22.1 0.0 1 1 2.4e-08 5.9e-07 21.7 0.0 2 45 4 46 3 91 0.89 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_25 - 211 MobB PF03205.9 140 1.3e-06 20.6 0.0 1 1 1e-07 2.4e-06 19.7 0.0 2 46 4 47 3 112 0.84 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_34 - 267 MobB PF03205.9 140 0.00019 13.6 0.0 1 1 1.5e-05 0.00036 12.7 0.0 8 39 10 40 3 113 0.88 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 267 ArsA_ATPase PF02374.10 305 5.8e-09 27.8 0.0 1 1 7.1e-10 1.7e-08 26.2 0.0 2 46 3 47 2 55 0.90 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_11 - 96 ArsA_ATPase PF02374.10 305 3.9e-06 18.5 1.0 1 1 1.9e-07 4.5e-06 18.3 0.4 4 34 6 36 3 46 0.87 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_25 - 211 ArsA_ATPase PF02374.10 305 6.5e-06 17.8 0.2 1 1 7.3e-07 1.8e-05 16.3 0.3 4 34 6 36 3 47 0.87 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_17 - 354 T2SE PF00437.15 272 5e-70 227.9 0.0 1 1 2.4e-71 5.8e-70 227.6 0.0 3 268 13 323 11 327 0.98 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_24 - 814 T2SE PF00437.15 272 0.00042 11.7 0.2 1 1 4.6e-05 0.0011 10.3 0.1 130 155 449 474 444 492 0.84 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_34 - 267 T2SE PF00437.15 272 0.0005 11.4 0.0 1 1 3.5e-05 0.00085 10.7 0.0 129 163 3 37 1 53 0.87 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 Methyltransf_24 PF13578.1 106 0.00014 15.2 0.1 1 1 6.3e-06 0.00045 13.5 0.0 23 95 28 105 12 112 0.54 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_17 - 354 Zeta_toxin PF06414.7 201 0.00016 13.3 0.0 1 1 3.7e-06 0.00027 12.5 0.0 16 65 172 223 159 241 0.79 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 267 VirC1 PF07015.6 231 1.4e-12 39.5 0.0 1 2 2.3e-06 5.6e-05 14.7 0.0 1 42 1 42 1 52 0.92 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_34 - 267 VirC1 PF07015.6 231 1.4e-12 39.5 0.0 2 2 6.2e-09 1.5e-07 23.1 0.0 78 134 107 163 93 263 0.82 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 VirC1 PF07015.6 231 3.2e-05 15.5 0.1 1 1 3.7e-06 8.9e-05 14.0 0.1 3 127 4 123 2 140 0.80 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_11 - 96 VirC1 PF07015.6 231 0.00036 12.1 0.1 1 1 1.5e-05 0.00037 12.0 0.1 3 43 4 44 2 87 0.89 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_34 - 267 Fer4_NifH PF00142.13 273 2.8e-07 22.4 0.0 1 1 5.8e-09 4.2e-07 21.8 0.0 4 44 6 46 2 61 0.87 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_24 - 814 Arch_ATPase PF01637.13 234 0.00078 11.6 0.0 1 1 2e-05 0.0015 10.7 0.0 23 56 450 484 444 493 0.79 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_11 - 96 AAA_16 PF13191.1 185 0.00023 13.6 0.1 1 1 1.3e-05 0.00031 13.2 0.1 34 89 13 81 6 93 0.64 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_24 - 814 AAA_16 PF13191.1 185 0.00032 13.1 0.4 1 1 4.8e-05 0.0011 11.3 0.1 25 44 448 467 437 499 0.79 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_25 - 211 AAA_16 PF13191.1 185 0.00069 12.1 1.8 1 1 5.1e-05 0.0012 11.2 1.7 34 120 13 140 6 200 0.54 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_24 - 814 AAA_23 PF13476.1 202 3.3e-05 16.7 0.1 1 1 2.3e-06 8.2e-05 15.4 0.1 20 48 448 478 430 499 0.84 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_17 - 354 AAA_23 PF13476.1 202 0.0011 11.8 1.7 1 1 5.1e-05 0.0018 11.0 1.0 21 41 174 194 153 196 0.84 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 354 AAA_18 PF13238.1 129 1.1e-05 18.2 0.0 1 1 1.3e-06 3.1e-05 16.8 0.0 1 34 175 212 175 249 0.74 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 96 AAA_18 PF13238.1 129 5.8e-05 15.9 0.0 1 1 2.7e-06 6.4e-05 15.7 0.0 8 39 13 49 11 94 0.78 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_25 - 211 AAA_18 PF13238.1 129 7.9e-05 15.4 0.0 1 1 5.5e-06 0.00013 14.7 0.0 8 80 13 87 11 98 0.76 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_34 - 267 CbiA PF01656.18 195 4.1e-30 97.0 0.0 1 1 2.2e-31 5.2e-30 96.7 0.0 1 178 4 201 4 215 0.79 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 CbiA PF01656.18 195 4.9e-18 57.6 0.6 1 1 1.4e-18 3.3e-17 54.9 0.6 1 175 5 161 5 174 0.77 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_11 - 96 CbiA PF01656.18 195 1.1e-12 40.1 0.4 1 1 1.3e-13 3.2e-12 38.7 0.4 1 38 5 42 5 91 0.89 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_34 - 267 AAA_14 PF13173.1 128 0.00069 12.0 0.0 1 1 1.7e-05 0.0012 11.2 0.0 12 47 12 48 2 79 0.77 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_17 - 354 AAA_29 PF13555.1 62 8.2e-06 17.8 0.0 1 1 5e-07 1.8e-05 16.7 0.0 8 39 160 188 155 201 0.87 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_24 - 814 AAA_29 PF13555.1 62 0.0002 13.4 0.1 1 1 1.4e-05 0.0005 12.1 0.1 25 42 449 465 436 474 0.80 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_11 - 96 AAA PF00004.24 132 0.00052 12.7 0.0 1 1 1e-05 0.00075 12.2 0.0 8 35 13 40 7 85 0.81 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 1_17 - 354 DUF258 PF03193.11 161 0.00046 11.8 0.0 1 1 1.1e-05 0.00081 11.0 0.0 31 59 168 196 144 239 0.75 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_17 - 439 TraG-D_C PF12696.2 128 6.6e-36 115.5 0.0 1 1 3.3e-37 1.2e-35 114.6 0.0 1 126 271 399 271 401 0.89 # 10724 # 12040 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.664 1_16 - 640 TraG-D_C PF12696.2 128 4.9e-31 99.7 0.0 1 1 3.2e-32 1.1e-30 98.5 0.0 2 126 393 511 392 513 0.89 # 9812 # 11731 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 1_34 - 267 AAA_31 PF13614.1 157 8.3e-11 34.5 0.1 1 1 1.1e-11 2.7e-10 32.8 0.1 3 155 4 149 2 151 0.78 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 AAA_31 PF13614.1 157 3.8e-08 25.9 0.0 1 2 8.4e-07 2e-05 17.0 0.0 2 42 4 44 3 65 0.85 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_25 - 211 AAA_31 PF13614.1 157 3.8e-08 25.9 0.0 2 2 0.00099 0.024 7.0 0.0 102 150 62 111 58 116 0.85 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_11 - 96 AAA_31 PF13614.1 157 1.6e-06 20.5 0.0 1 1 1e-07 2.5e-06 20.0 0.0 2 44 4 46 3 84 0.80 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_33 - 550 AAA_30 PF13604.1 196 1.7e-43 140.9 1.9 1 1 2.3e-45 1.7e-43 140.9 1.9 65 195 3 128 1 129 0.96 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_24 - 814 FtsK_SpoIIIE PF01580.13 205 0.00038 12.4 0.0 1 1 1.1e-05 0.0008 11.3 0.0 39 60 443 469 419 473 0.81 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 1_17 - 354 ABC_tran PF00005.22 137 2e-05 17.4 0.0 1 1 5.1e-07 3.6e-05 16.5 0.0 12 47 173 209 165 298 0.82 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 267 AAA_19 PF13245.1 76 0.00021 13.5 0.0 1 1 7.2e-06 0.00052 12.2 0.0 20 52 12 40 2 64 0.73 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_24 - 814 AAA_10 PF12846.2 304 5.7e-35 113.6 0.0 1 1 6.4e-36 1.2e-34 112.6 0.0 2 292 448 724 448 735 0.90 # 17977 # 20418 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.570 2_17 - 439 AAA_10 PF12846.2 304 4.2e-10 31.9 0.0 1 1 3.5e-11 6.3e-10 31.3 0.0 3 300 17 347 16 350 0.69 # 10724 # 12040 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.664 1_17 - 354 AAA_10 PF12846.2 304 0.00052 11.9 0.0 1 1 5.1e-05 0.00092 11.1 0.0 3 31 174 202 172 211 0.82 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 2_11 - 96 AAA_10 PF12846.2 304 0.00061 11.7 0.0 1 1 3.6e-05 0.00065 11.6 0.0 10 53 12 58 5 79 0.76 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_30 - 95 ThiF PF00899.16 136 0.00024 13.4 0.0 1 1 3.8e-06 0.00027 13.2 0.0 58 111 26 80 12 91 0.83 # 18113 # 18397 # 1 # ID=2_30;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.621 2_33 - 550 Viral_helicase1 PF01443.13 234 1.4e-09 30.2 0.0 1 2 4.1e-06 0.0003 12.8 0.0 61 104 26 71 17 93 0.79 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 2_33 - 550 Viral_helicase1 PF01443.13 234 1.4e-09 30.2 0.0 2 2 7.8e-07 5.6e-05 15.2 0.1 182 233 248 292 207 293 0.82 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_34 - 267 DUF2075 PF09848.4 352 0.00065 11.1 0.0 1 1 1.3e-05 0.00091 10.6 0.0 1 42 2 41 2 65 0.81 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 1_17 - 354 PduV-EutP PF10662.4 143 0.00051 12.0 0.0 1 1 1.3e-05 0.00096 11.1 0.0 2 21 173 192 172 225 0.93 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_17 - 354 DEAD PF00270.24 169 0.00021 13.3 0.0 1 1 4.6e-06 0.00033 12.6 0.0 12 53 170 208 158 329 0.68 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_16 - 640 TrwB_AAD_bind PF10412.4 386 1.5e-27 88.6 0.0 1 1 2.8e-28 1e-26 85.8 0.0 63 380 181 526 170 532 0.81 # 9812 # 11731 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 2_17 - 439 TrwB_AAD_bind PF10412.4 386 4.7e-24 77.1 0.0 1 1 3.8e-25 1.4e-23 75.6 0.0 92 380 103 414 96 418 0.78 # 10724 # 12040 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.664 2_33 - 550 AAA_11 PF13086.1 236 7e-07 21.4 0.0 1 1 2.6e-08 1.9e-06 20.0 0.0 179 232 4 70 1 71 0.81 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_16 - 640 T4SS-DNA_transf PF02534.9 469 3.6e-100 328.1 0.0 1 1 1.4e-101 4.9e-100 327.7 0.0 46 461 134 548 94 555 0.89 # 9812 # 11731 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.561 2_17 - 439 T4SS-DNA_transf PF02534.9 469 6.8e-81 264.5 0.0 1 1 2.7e-82 9.7e-81 264.0 0.0 41 452 9 427 6 435 0.89 # 10724 # 12040 # 1 # ID=2_17;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.664 2_11 - 96 ArgK PF03308.11 267 2.5e-05 15.5 0.2 1 1 1.2e-06 4.4e-05 14.8 0.2 37 85 11 56 2 88 0.83 # 7095 # 7382 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.635 2_25 - 211 ArgK PF03308.11 267 6.5e-05 14.2 0.3 1 1 7.7e-06 0.00028 12.1 0.3 37 85 11 56 2 123 0.83 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 1_17 - 354 UPF0079 PF02367.12 123 0.00041 12.4 0.0 1 1 1.2e-05 0.00086 11.4 0.0 14 45 171 202 159 205 0.81 # 11745 # 12806 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.540 1_34 - 267 AAA_25 PF13481.1 194 1.7e-05 16.7 0.0 1 1 1.1e-06 3.9e-05 15.5 0.0 42 151 11 121 4 129 0.61 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 2_25 - 211 AAA_25 PF13481.1 194 5.6e-05 15.0 0.7 1 1 0.00013 0.0048 8.7 0.7 43 157 13 94 4 113 0.55 # 15502 # 16134 # -1 # ID=2_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.671 2_33 - 550 Herpes_Helicase PF02689.9 819 2e-06 18.2 0.0 1 2 0.00042 0.031 4.4 0.0 178 213 10 45 2 48 0.79 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 2_33 - 550 Herpes_Helicase PF02689.9 819 2e-06 18.2 0.0 2 2 2.7e-06 0.00019 11.6 0.0 738 786 246 292 232 306 0.85 # 18834 # 20483 # -1 # ID=2_33;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.652 1_34 - 267 APS_kinase PF01583.15 157 4e-05 15.8 0.0 1 1 1e-06 7.5e-05 14.9 0.0 4 40 4 40 1 51 0.90 # 25899 # 26699 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4da30da2-8364-474a-9873-4cdd8b7e6775 # Target file: checkm_output/bins/pGCA_001705545.1.assembled/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pGCA_001705545.1.assembled/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4da30da2-8364-474a-9873-4cdd8b7e6775 checkm_output/bins/pGCA_001705545.1.assembled/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 16:46:20 2020 # [ok]